bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters



Query= Contig-25_CDS_annotation_glimmer3.pl_2_1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|522150955|ref|WP_020662163.1|  cytochrome C biosynthesis protein   41.2    0.28
gi|647281334|ref|WP_025726565.1|  DNA methylase                       39.3    1.1
gi|664046654|ref|WP_030586034.1|  histidine kinase                    37.0    3.5
gi|611291268|dbj|GAJ40418.1|  hypothetical protein GCA01S_044_00040   37.0    8.4
gi|516006113|ref|WP_017436696.1|  hypothetical protein                37.0    8.6
gi|612118795|gb|EZP76810.1|  PAS/PAC sensor protein                   37.0    9.3


>gi|522150955|ref|WP_020662163.1| cytochrome C biosynthesis protein [Amycolatopsis benzoatilytica]
Length=267

 Score = 41.2 bits (95),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 35/127 (28%), Positives = 57/127 (45%), Gaps = 14/127 (11%)

Query  84   PNDKQAKEVTVFRERFNKIVVDVTSTGFCAKITKVILRSLCVICNLRHGDRNSIS-----  138
            P+   A+ VT  RER   I + +        IT ++ RS  +IC  R G+ N++S     
Sbjct  69   PDGLAAEAVTALRERRGVIDLVMADAEGATAITALVYRSWALICRQRRGE-NTLSLRRVP  127

Query  139  -TEVFRALQPSIRRTNAKQAKQQLSIPRTIASHRLEKTLIRERQAQFVHSERCINVITRT  197
             T +  A+   I  TNA +     ++P T+ +H ++ TL          + R I +  R 
Sbjct  128  ETGLVDAVLAEIPETNAAR-----TMPVTLPAHAVDATLALTEDDDEDDTSRAIRL--RN  180

Query  198  SSRNSSG  204
              R+S G
Sbjct  181  LVRDSGG  187


>gi|647281334|ref|WP_025726565.1| DNA methylase [Bacteroides sp. 14(A)]
Length=246

 Score = 39.3 bits (90),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (45%), Gaps = 13/134 (10%)

Query  57   GKFRIVEVGELLTSPESLNSLRIAVIIPNDKQAKEVTVFRERFN-----------KIVVD  105
            G  R+  + EL   P++   +R+ VI  N+KQ KE+ +     N           +IV D
Sbjct  63   GHQRLSVMDELQKFPDNDYRIRVDVIDVNEKQEKELNILMNNPNAQGMWDFDALARIVPD  122

Query  106  VTSTGFCAKITKVILRSLCVICNLRHGDRNSISTEVFRALQPSIRRTNAKQAKQQLSIPR  165
            +      A +T   L  + V   L+  + NSI+  +   ++P I +  A +A +QL    
Sbjct  123  IDWKD--AGLTDADLNMIGVDYLLQTEEENSIADALSNMMEPVIEQKEANKAAKQLERAE  180

Query  166  TIASHRLEKTLIRE  179
             +A  +  K  ++E
Sbjct  181  KVAHMKEVKQQVKE  194


>gi|664046654|ref|WP_030586034.1| histidine kinase [Streptomyces anulatus]
Length=152

 Score = 37.0 bits (84),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (10%)

Query  54   AKMGKFRIV----EVGELLTSPESLNSLRIAVIIPNDKQAKEVTVFRERFNKIVVDVTST  109
            AK+G++R V    +VGELL S    N+LR+AV  P D+      V RER   + ++V+  
Sbjct  30   AKLGEWRAVQAPTDVGELLLSELVTNALRVAV--PGDRMIGVRIVCRERGASLRLEVSDA  87

Query  110  G  110
            G
Sbjct  88   G  88


>gi|611291268|dbj|GAJ40418.1| hypothetical protein GCA01S_044_00040 [Geobacillus caldoxylosilyticus 
NBRC 107762]
Length=483

 Score = 37.0 bits (84),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (6%)

Query  67   LLTSPESLNSLRI-AVIIPNDKQAKEVT----VFRERFNKIVVDVTSTGFCAKITKVILR  121
            LLT P   N + + AV IP+D  + ++     + R+R+  I++DV   G  + +  ++LR
Sbjct  258  LLTPPIQNNVVTMDAVYIPSDDLSGDIYACYQIDRDRYGVIIIDVMGHGISSSLVSMLLR  317

Query  122  SLCVICNLRHGDRNSISTEVFRALQ  146
            SL     +R  D   ++TE+ + +Q
Sbjct  318  SLLRGLIVRVIDPVYVATELEKHVQ  342


>gi|516006113|ref|WP_017436696.1| hypothetical protein [Geobacillus caldoxylosilyticus]
Length=483

 Score = 37.0 bits (84),  Expect = 8.6, Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (6%)

Query  67   LLTSPESLNSLRI-AVIIPNDKQAKEVT----VFRERFNKIVVDVTSTGFCAKITKVILR  121
            LLT P   N + + AV IP+D  + ++     + R+R+  I++DV   G  + +  ++LR
Sbjct  258  LLTPPIQNNVVTMDAVYIPSDDLSGDIYACYQIDRDRYGVIIIDVMGHGISSSLVSMLLR  317

Query  122  SLCVICNLRHGDRNSISTEVFRALQ  146
            SL     +R  D   ++TE+ + +Q
Sbjct  318  SLLRGLIVRVIDPVYVATELEKHVQ  342


>gi|612118795|gb|EZP76810.1| PAS/PAC sensor protein [Geobacillus stearothermophilus NUB3621]
Length=482

 Score = 37.0 bits (84),  Expect = 9.3, Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (6%)

Query  67   LLTSPESLNSLRI-AVIIPNDKQAKEVT----VFRERFNKIVVDVTSTGFCAKITKVILR  121
            LLT P   N + + AV IP+D  + ++     + R+R+  I++DV   G  + +  ++LR
Sbjct  257  LLTPPIQNNVVTMDAVYIPSDDLSGDIYACYQIDRDRYGVIIIDVMGHGISSSLVSMLLR  316

Query  122  SLCVICNLRHGDRNSISTEVFRALQ  146
            SL     +R  D   ++TE+ + +Q
Sbjct  317  SLLRGLIVRVIDPVYVATELEKHVQ  341



Lambda      K        H        a         alpha
   0.322    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 671121370458