bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-28_CDS_annotation_glimmer3.pl_2_1
Length=162
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094491|emb|CDL65858.1| unnamed protein product 150 2e-42
gi|575094543|emb|CDL65903.1| unnamed protein product 143 4e-40
gi|575096063|emb|CDL66946.1| unnamed protein product 123 3e-32
gi|575094571|emb|CDL65927.1| unnamed protein product 117 2e-30
gi|575094497|emb|CDL65863.1| unnamed protein product 115 8e-29
gi|575094414|emb|CDL65789.1| unnamed protein product 91.3 8e-20
gi|655438321|ref|WP_028823072.1| hypothetical protein 54.7 8e-07
gi|530695387|gb|AGT39940.1| portal protein 52.8 4e-06
gi|530695353|gb|AGT39909.1| portal protein 50.4 2e-05
gi|575094432|emb|CDL65805.1| unnamed protein product 48.9 9e-05
>gi|575094491|emb|CDL65858.1| unnamed protein product [uncultured bacterium]
Length=176
Score = 150 bits (378), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 104/151 (69%), Gaps = 4/151 (3%)
Query 1 MRKFRTQFDEHPRYQCCTGSRIKKLYAPRFDENGVMDLVEKGEENLYEYIQSYKDSVDIN 60
M KF+TQF H R G IK +Y+PR+DENGV+DL GEENLY++IQS+ S DI+
Sbjct 1 MVKFKTQFHSHARVFQRPGDPIKVVYSPRYDENGVLDLQPTGEENLYDFIQSHAQSTDIH 60
Query 61 TLLRRYAQGDPDALSRVQAAYGDFTGLPSTYADLLNAVNDGKQYFESLPVDVRAQFNHSF 120
+L R+A G+ D LS++Q Y D + +P TYA++LNAV G+Q F+ LPV+++ +F +SF
Sbjct 61 VILDRFASGETDVLSQIQGFYADASDMPKTYAEVLNAVIAGEQTFDRLPVEIKQKFGNSF 120
Query 121 SEFMASMDGPDFWRKLGVVQSAQETPSPGCS 151
S +++SMD PDF ++G + A+ PG +
Sbjct 121 STWLSSMDNPDFAERMGFPKPAE----PGMT 147
>gi|575094543|emb|CDL65903.1| unnamed protein product [uncultured bacterium]
Length=145
Score = 143 bits (361), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 64/126 (51%), Positives = 95/126 (75%), Gaps = 0/126 (0%)
Query 4 FRTQFDEHPRYQCCTGSRIKKLYAPRFDENGVMDLVEKGEENLYEYIQSYKDSVDINTLL 63
FR+QFD+H R C +GS I +Y R+D++GV DL G++N+Y+ IQS++DSVDI+ LL
Sbjct 2 FRSQFDDHDRVYCSSGSPIHIVYQGRYDDDGVFDLFPSGQDNIYDQIQSHRDSVDIHVLL 61
Query 64 RRYAQGDPDALSRVQAAYGDFTGLPSTYADLLNAVNDGKQYFESLPVDVRAQFNHSFSEF 123
RY +GD D LS Q YGDFTG+P++Y+++LNAV G++ F LPVD RA++ HSF+++
Sbjct 62 DRYQRGDVDVLSARQGVYGDFTGMPASYSEILNAVLAGERAFMDLPVDERAKYGHSFAQW 121
Query 124 MASMDG 129
++S+D
Sbjct 122 LSSLDA 127
>gi|575096063|emb|CDL66946.1| unnamed protein product [uncultured bacterium]
Length=163
Score = 123 bits (309), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/147 (43%), Positives = 91/147 (62%), Gaps = 0/147 (0%)
Query 1 MRKFRTQFDEHPRYQCCTGSRIKKLYAPRFDENGVMDLVEKGEENLYEYIQSYKDSVDIN 60
M +F+TQ+D H R GSR Y +D+ G + L E G NLY+ IQS+ +SVD++
Sbjct 1 MMEFKTQYDPHDRIFTEAGSREHITYGGHYDDEGRVVLEETGRINLYDEIQSHAESVDLH 60
Query 61 TLLRRYAQGDPDALSRVQAAYGDFTGLPSTYADLLNAVNDGKQYFESLPVDVRAQFNHSF 120
L++RY+ GD D LS+ Q +GD P TYA+ LN + + ++ F SLP+DVRA+F HSF
Sbjct 61 VLMQRYSCGDVDCLSQRQGFFGDVLDFPQTYAEALNHMQEMERQFMSLPLDVRAKFGHSF 120
Query 121 SEFMASMDGPDFWRKLGVVQSAQETPS 147
SEF+A+ DF +LG + P+
Sbjct 121 SEFLAASGDDDFLERLGFKPEPESAPA 147
>gi|575094571|emb|CDL65927.1| unnamed protein product [uncultured bacterium]
Length=133
Score = 117 bits (294), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 81/116 (70%), Gaps = 3/116 (3%)
Query 28 PRFDENGVMDLVEKGEENLYEYIQSYKDSVDINTLLRRYAQGDPDALSRVQAAYGDFTGL 87
+ ++G +DLVE G++NLY+ IQS+KDSVD+N LL+R+ G+ D LSR+Q Y D + +
Sbjct 2 AKVGDDGAIDLVENGKKNLYDEIQSHKDSVDLNLLLQRFNNGEVDVLSRMQGTYADLSNM 61
Query 88 PSTYADLLNAVNDGKQYFESLPVDVRAQFNHSFSEFMASMDGPDF---WRKLGVVQ 140
P TYAD+LN + G+ F SLPVDVRA+F+HSF +++ + D+ +K VVQ
Sbjct 62 PKTYADMLNLIKKGEADFLSLPVDVRAKFDHSFEKWLVTFGSQDWIVNMKKDSVVQ 117
>gi|575094497|emb|CDL65863.1| unnamed protein product [uncultured bacterium]
Length=170
Score = 115 bits (287), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Query 4 FRTQFDEHPR-YQCCTGSRIKKLYAPRFDENGVMDLVEKGEENLYEYIQSYKDSVDINTL 62
FRT+++ + ++ +G + Y R E+G +L + G +LY IQSYKDS DIN +
Sbjct 3 FRTKYNRNKEVFKSTSGDGYQPTYKMRVHEDGKRELEKVGRIDLYAQIQSYKDSCDINYI 62
Query 63 LRRYAQGDPDALSRVQAAYGDFTGLPSTYADLLNAVNDGKQYFESLPVDVRAQFNHSFSE 122
L R+A+GD ALS++Q YGDFT +P+ A+L V D + F +LPVD+RA+FNHS SE
Sbjct 63 LERFARGDESALSKIQGVYGDFTAMPTNLAELQQRVVDAEALFYNLPVDIRAEFNHSPSE 122
Query 123 FMASMDGPDFWRKLGVVQSAQETPSP 148
F +++ F + +G+ + Q P P
Sbjct 123 FYSAIGTDKFNKAVGI--TPQVDPQP 146
>gi|575094414|emb|CDL65789.1| unnamed protein product [uncultured bacterium]
Length=167
Score = 91.3 bits (225), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 80/131 (61%), Gaps = 1/131 (1%)
Query 19 GSRIKKLYAPRFDENGVMDLVEKGEENLYEYIQSYKDSVDINTLLRRYAQGDPDALSRVQ 78
G+ ++ Y + ENG L + GE N Y IQSYKD D++++L RY GD LSR Q
Sbjct 21 GNELEPHYIEKIGENGRTYLEKDGETNTYAEIQSYKDECDVHSILCRYFAGDTSVLSR-Q 79
Query 79 AAYGDFTGLPSTYADLLNAVNDGKQYFESLPVDVRAQFNHSFSEFMASMDGPDFWRKLGV 138
Y D T LP+TY ++ N + + + F+ LP++++ +F++SF+ + ++ ++++ +G+
Sbjct 80 GVYIDATQLPTTYHEMYNLMAEQRDKFDQLPLEIKRKFDNSFNVWASTAGSEEWYKLMGI 139
Query 139 VQSAQETPSPG 149
VQ+A+ G
Sbjct 140 VQNAENNKPEG 150
>gi|655438321|ref|WP_028823072.1| hypothetical protein [Proteobacteria bacterium JGI 0000113-P07]
Length=149
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (56%), Gaps = 5/102 (5%)
Query 51 QSYKDSVDINTLLRRYAQ-GDPDALSRVQAAYGDFTGLPSTYADLLNAVNDGKQYFESLP 109
Q +++ DI +++R+ + G + + R QA YGDF+ + Y + L+ V + + F +P
Sbjct 31 QHFQEECDIINIIKRHDRNGIIEHVHRGQARYGDFSEV-HDYREALDLVQEANEEFMKIP 89
Query 110 VDVRAQFNHSFSEFMASMDGPDF---WRKLGVVQSAQETPSP 148
D+R QFN++ EF+ + PD +K+G V+ + SP
Sbjct 90 SDIRKQFNNNPGEFLNFVSNPDNEEEIQKMGFVKKSASVSSP 131
>gi|530695387|gb|AGT39940.1| portal protein [Marine gokushovirus]
Length=164
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 61/103 (59%), Gaps = 9/103 (9%)
Query 51 QSYKDSVDINTLLRRYAQ-GDPDALSRVQAAYGDFTGLPSTYADLLNAVNDGKQYFESLP 109
Q +KD ++ +++++ + G + + R QA YGDF+ + + Y + L+ V D +Q F S+P
Sbjct 36 QHFKDECEVINIIKKHDRNGIIEHVQRGQARYGDFSQV-ADYREALDLVRDAQQEFMSVP 94
Query 110 VDVRAQFNH---SFSEFMASMDGPDFWRKLGVVQSAQETPSPG 149
D+R +F++ F EF+++ D + +++G + ETP G
Sbjct 95 SDIRKKFDNDPGKFYEFVSNPDNKEELKQMGFI----ETPEVG 133
>gi|530695353|gb|AGT39909.1| portal protein [Marine gokushovirus]
Length=139
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (9%)
Query 51 QSYKDSVDINTLLRRYAQGDPDALSRVQAAYGDF--TGLPSTYADLLNAVNDGKQYFESL 108
Q +KD +IN ++R+Y L + +GD+ T +P Y L N + + Q F SL
Sbjct 29 QQFKDENNINLMIRKYG-----VLPMEKVDWGDYDATVIPQDYHQLQNMMKEADQAFMSL 83
Query 109 PVDVRAQFNHSFSEFMASMD 128
P DVRAQ ++ +F+A +D
Sbjct 84 PADVRAQVDNDPVKFLAMLD 103
>gi|575094432|emb|CDL65805.1| unnamed protein product [uncultured bacterium]
Length=158
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/133 (25%), Positives = 64/133 (48%), Gaps = 6/133 (5%)
Query 10 EHPRYQCCTGSRIKKLYAPRFDEN-GVMDLVEKGEENLYEYIQSYKDSVDINTLLRRYAQ 68
E R + TG + +Y +++ G +L G E++Y+ +Q + I ++RR A
Sbjct 11 ERKRIKSATGDGTEPVYEYEVNKDTGRKELRLVGRESVYDKVQESLEETKIQNIVRR-AT 69
Query 69 GDPDALSRVQ----AAYGDFTGLPSTYADLLNAVNDGKQYFESLPVDVRAQFNHSFSEFM 124
DP+ L + D TGLP+ + + + ++ F+ LP ++R F++S F+
Sbjct 70 FDPEILGSTEWMEKQGMVDITGLPTNIHEYHDFMLTAQKDFDKLPSEIRELFDNSLETFV 129
Query 125 ASMDGPDFWRKLG 137
A P++ K+
Sbjct 130 AEFGTPEWESKIN 142
Lambda K H a alpha
0.317 0.134 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 436464609906