bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-2_CDS_annotation_glimmer3.pl_2_7
Length=171
Score E
Sequences producing significant alignments: (Bits) Value
gi|496050830|ref|WP_008775337.1| hypothetical protein 53.1 3e-06
gi|547226429|ref|WP_021963492.1| putative uncharacterized protein 51.6 9e-06
gi|490418710|ref|WP_004291033.1| hypothetical protein 49.7 6e-05
gi|494822883|ref|WP_007558291.1| hypothetical protein 44.7 0.004
gi|565841289|ref|WP_023924570.1| hypothetical protein 38.5 0.82
gi|504973508|ref|WP_015160610.1| hypothetical protein 36.2 2.0
>gi|496050830|ref|WP_008775337.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448894|gb|EEO54685.1| hypothetical protein BSCG_01610 [Bacteroides sp. 2_2_4]
Length=154
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (36%), Positives = 50/90 (56%), Gaps = 7/90 (8%)
Query 41 PVEQFRFETETFGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRF--LDSKSPRSSSLQE 98
PV+QF F+ + S RL SD+ ML + L K + S ++ F + PR + L+
Sbjct 34 PVDQFLFQEVSVDGDTSIRLSSDIYMLFNQQRLDKLSQTSLLEYFNNISVTEPRFNELRS 93
Query 99 QLDKLNPSDDELLSMVKSRHLQHPSEILAW 128
+L D++L+S VKSR +Q SE++AW
Sbjct 94 KL-----GDEQLISFVKSRFIQSKSELMAW 118
>gi|547226429|ref|WP_021963492.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103381|emb|CCY83992.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=152
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/97 (32%), Positives = 54/97 (56%), Gaps = 7/97 (7%)
Query 41 PVEQFRFETETF----GESVSYRLRSDVSMLLHAADLAKRAGVSTVQRFLDSKSPRSSSL 96
P+ +F E T+ + + D+ ML + L G T+Q++LD +PRS SL
Sbjct 29 PIREFMTEKVTYFNGSDKKTAIAYVDDIYMLFNQNRL-DSVGRDTIQKWLDGLTPRSDSL 87
Query 97 QEQLDKLNPSDDELLSMVKSRHLQHPSEILAWIDSIN 133
+ + N +D++L+ + KSR++Q SE+LAW + +N
Sbjct 88 AKLRE--NVTDEQLMEICKSRYIQSSSELLAWSEYLN 122
>gi|490418710|ref|WP_004291033.1| hypothetical protein [Bacteroides eggerthii]
gi|217986637|gb|EEC52971.1| hypothetical protein BACEGG_02722 [Bacteroides eggerthii DSM
20697]
Length=155
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/95 (36%), Positives = 53/95 (56%), Gaps = 9/95 (9%)
Query 37 LEVDPVEQFRF-ETETFGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRF--LDSKSPRS 93
+E P+ +F F E E G+ S R+ SD+ ML + L K V+ F L P+
Sbjct 31 VEPSPLHEFMFQEIECDGKK-SIRITSDIYMLFNQQRLDKLTRSQLVEYFDNLSVSEPKM 89
Query 94 SSLQEQLDKLNPSDDELLSMVKSRHLQHPSEILAW 128
S L++++ +D++L S VKSR +Q PSE++AW
Sbjct 90 SDLRKKM-----TDEQLCSFVKSRFIQTPSELMAW 119
>gi|494822883|ref|WP_007558291.1| hypothetical protein [Bacteroides plebeius]
gi|198272098|gb|EDY96367.1| hypothetical protein BACPLE_00803 [Bacteroides plebeius DSM 17135]
Length=140
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (59%), Gaps = 10/92 (11%)
Query 41 PVEQF-RFETET-FGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRFLDS-KSPRSSS-L 96
PVE F R E +T G + + R+D+ M+L+ +R T+ +F D RS+S L
Sbjct 12 PVEDFYREEVQTPLGSTPAVTYRNDIYMILNQ----RRLDSMTLAQFSDYLDHDRSASQL 67
Query 97 QEQLDKLNPSDDELLSMVKSRHLQHPSEILAW 128
+ +K+ SD++L VKSR++QHPSE+ AW
Sbjct 68 SQMREKM--SDEQLHQFVKSRYIQHPSELRAW 97
>gi|565841289|ref|WP_023924570.1| hypothetical protein [Prevotella nigrescens]
gi|564729908|gb|ETD29852.1| hypothetical protein HMPREF1173_00034 [Prevotella nigrescens
CC14M]
Length=148
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 9/62 (15%)
Query 84 RFLDSKSPRS------SSLQEQLDKLNPS---DDELLSMVKSRHLQHPSEILAWIDSINE 134
R D +PR SSLQ+ + PS DD++LS++ R+ Q P EI ++D++ +
Sbjct 60 RLADPATPRKERDFILSSLQQLKGRSVPSELSDDDVLSLIPPRYCQDPVEIARFVDAVKD 119
Query 135 LA 136
LA
Sbjct 120 LA 121
>gi|504973508|ref|WP_015160610.1| hypothetical protein [Chamaesiphon minutus]
gi|434387398|ref|YP_007098009.1| hypothetical protein Cha6605_3492 [Chamaesiphon minutus PCC 6605]
gi|428018388|gb|AFY94482.1| hypothetical protein Cha6605_3492 [Chamaesiphon minutus PCC 6605]
Length=95
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (33%), Positives = 36/67 (54%), Gaps = 1/67 (1%)
Query 69 HAADLAKRAGVSTVQRFLDSKSPRSSSLQEQLDKLNPSDDELLSMVKSRHLQHPSEI-LA 127
H DLA + TV++ ++ S ++Q+ D LNPS E+ + +S L PSE+ L
Sbjct 12 HILDLAIKHNDKTVKQLVNYPSSLLIAMQQYKDNLNPSYTEIYKIFESGLLLSPSEVDLN 71
Query 128 WIDSINE 134
W+ + N
Sbjct 72 WLKNQNN 78
Lambda K H a alpha
0.312 0.127 0.347 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 432659022237