bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-34_CDS_annotation_glimmer3.pl_2_1
Length=184
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094327|emb|CDL65713.1| unnamed protein product 98.6 9e-21
gi|575096096|emb|CDL66976.1| unnamed protein product 73.2 2e-12
gi|504330771|ref|WP_014517873.1| hypothetical protein 64.3 3e-10
gi|575094560|emb|CDL65924.1| unnamed protein product 63.9 3e-09
gi|19424731|ref|NP_598335.1| hypothetical protein Sp-4p1 63.5 4e-09
gi|499185333|ref|WP_010882873.1| hypothetical protein 60.1 8e-09
gi|557745630|ref|YP_008798246.1| replication initiator 62.4 1e-08
gi|492501778|ref|WP_005867316.1| hypothetical protein 60.5 4e-08
gi|575094557|emb|CDL65915.1| unnamed protein product 60.1 7e-08
gi|77020121|ref|YP_338244.1| putative replication protein 60.1 7e-08
>gi|575094327|emb|CDL65713.1| unnamed protein product [uncultured bacterium]
Length=515
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (64%), Gaps = 5/108 (5%)
Query 56 IVNPVTGETFPMFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLP 115
++N TG+ P+++ VPC C +C ++KA + RA+ E+ + FITLTYN EHLP
Sbjct 64 LLNSETGDMIPLYIAVPCGSCIICRKRKANALATRAIMETEITGSSPLFITLTYNPEHLP 123
Query 116 KNG-----VFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKR 158
KN + ++QLFFKRLR+ LD + I H+LRY+A EYG +KR
Sbjct 124 KNQYGYLTLRKLDLQLFFKRLRSLLDNQSIPHSLRYLACGEYGSNTKR 171
>gi|575096096|emb|CDL66976.1| unnamed protein product [uncultured bacterium]
Length=296
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (59%), Gaps = 2/92 (2%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEE-IQL 126
+++VPC +C C +A +W+ R C S+ + F+TLTYN+++LP NG ++ +Q
Sbjct 33 YVLVPCGQCLECRLHRASEWALRC-CHELKSHDKGIFLTLTYNDDNLPPNGTLVKKHVQD 91
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKR 158
F KRLR +D G +RY+ EYG S R
Sbjct 92 FIKRLRRHIDYYGDCTKIRYLCAGEYGDLSLR 123
>gi|504330771|ref|WP_014517873.1| hypothetical protein [Chlamydia pneumoniae]
gi|384449518|ref|YP_005662120.1| hypothetical protein CPK_ORF00729 [Chlamydophila pneumoniae LPCoLN]
gi|269303098|gb|ACZ33198.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]
gi|572023919|gb|ETR80121.1| nonstructural protein [Chlamydia pneumoniae B21]
Length=121
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/87 (38%), Positives = 52/87 (60%), Gaps = 6/87 (7%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 126
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYG 153
F KRLR ++ H +RY EYG
Sbjct 78 FLKRLRDRIS----PHKIRYFGCGEYG 100
>gi|575094560|emb|CDL65924.1| unnamed protein product [uncultured bacterium]
Length=320
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (57%), Gaps = 13/102 (13%)
Query 53 KYTIVNPVTGETFPMFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNE 112
KY +P GE +PC +C C ++ + RA ES ++ YF+TLTY+ E
Sbjct 32 KYADADPELGE-----FQIPCGQCIGCRLDRSLDSAVRAHHESLLYDRN-YFLTLTYSPE 85
Query 113 HLPKNG-VFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYG 153
HLP G + P ++ LF+KRLR +RG+S LRY+A EYG
Sbjct 86 HLPPFGSLIPRDLTLFWKRLR----KRGVS--LRYMACGEYG 121
>gi|19424731|ref|NP_598335.1| hypothetical protein Sp-4p1 [Spiroplasma phage 4]
gi|137995|sp|P11334.1|REP_SPV4 RecName: Full=Replication-associated protein ORF2; AltName: Full=Rep
[Spiroplasma phage 4]
Length=320
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/88 (40%), Positives = 49/88 (56%), Gaps = 6/88 (7%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGV-----FPEEIQ 125
VPC KC C + +W RA E ++ K +F+TLTY++EHL N + PE I
Sbjct 43 VPCRKCVGCRLDNSAEWGVRASLEIKSNPKHNWFVTLTYSDEHLVYNALGRPNCVPEHIT 102
Query 126 LFFKRLRTKLDRRGISHNLRYIAVSEYG 153
F K LR +RRG ++Y+A +EYG
Sbjct 103 KFIKSLRKYFERRG-HIGIKYLASNEYG 129
>gi|499185333|ref|WP_010882873.1| hypothetical protein [Chlamydia pneumoniae]
gi|15618146|ref|NP_224431.1| hypothetical protein CPn0222 [Chlamydophila pneumoniae CWL029]
gi|15835757|ref|NP_300281.1| hypothetical protein CPj0222 [Chlamydophila pneumoniae J138]
gi|16752818|ref|NP_445087.1| hypothetical protein CP0543 [Chlamydophila pneumoniae AR39]
gi|33241562|ref|NP_876503.1| hypothetical protein CpB0227 [Chlamydophila pneumoniae TW-183]
gi|4376495|gb|AAD18375.1| hypothetical protein CPn_0222 [Chlamydophila pneumoniae CWL029]
gi|7189456|gb|AAF38365.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8978595|dbj|BAA98432.1| CPj0222 [Chlamydophila pneumoniae J138]
gi|33236070|gb|AAP98160.1| hypothetical protein CpB0227 [Chlamydophila pneumoniae TW-183]
Length=113
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/87 (37%), Positives = 50/87 (57%), Gaps = 6/87 (7%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-EIQL 126
++++PC KC C + A+ WS+R + E+ K F+TLTY+++HLP+ G + +QL
Sbjct 19 WVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC-FLTLTYDDKHLPQYGSLVKLHLQL 77
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYG 153
F KRLR + H +RY YG
Sbjct 78 FLKRLRKMIS----PHKIRYFECGAYG 100
>gi|557745630|ref|YP_008798246.1| replication initiator [Marine gokushovirus]
gi|530695343|gb|AGT39900.1| replication initiator [Marine gokushovirus]
Length=312
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (47%), Gaps = 21/135 (16%)
Query 58 NPVTGETFPMF--LIVPCHKCPLCNEKKAQQWSFRALCESY---TSNKQAYFITLTYNNE 112
+P G+ M+ + PC C C KK Q+W+ R L E T + + FITLTY+N+
Sbjct 18 SPKDGDWPEMYPPMTRPCGYCKGCRFKKQQEWTVRCLNEQQILETKGRSSSFITLTYDNK 77
Query 113 HLPKNGVFP-EEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRRVHSFGR----FF 167
HLP N Q F + L+ +R ++RY V EYG +FGR
Sbjct 78 HLPPNNSLDYTHWQKFIRSLK----KRNNGKSIRYFGVGEYG-------ENFGRPHFHAI 126
Query 168 TFSHIFHDIIDTTVN 182
F H F+D+I N
Sbjct 127 LFGHTFNDLIPMHSN 141
>gi|492501778|ref|WP_005867316.1| hypothetical protein [Parabacteroides distasonis]
gi|409230407|gb|EKN23271.1| hypothetical protein HMPREF1059_03256 [Parabacteroides distasonis
CL09T03C24]
Length=284
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-------- 122
VPC +C C + K Q W +R E+ + F+TLTY++EH+P + +
Sbjct 15 VPCGRCVNCRKNKRQSWVYRLQAEA-DEYPFSLFVTLTYDDEHMPTAMIGEDLFKSTVGV 73
Query 123 ----EIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKR 158
+IQLF KRLR K D+ + LRY SEYG R
Sbjct 74 VSKRDIQLFMKRLRKKYDQ----YRLRYFLTSEYGSQGGR 109
>gi|575094557|emb|CDL65915.1| unnamed protein product [uncultured bacterium]
Length=354
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (53%), Gaps = 7/114 (6%)
Query 73 CHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLP--KNG---VFPEEIQLF 127
C KC C K ++W+ R + E + A F+TLTY+ +++P ++G + ++QLF
Sbjct 32 CGKCLACRVKTRREWTSRLILEMLGHDSGA-FVTLTYSEDYVPVTESGHRTLSLRDLQLF 90
Query 128 FKRLRTKLDRRGIS-HNLRYIAVSEYGHWSKRRVHSFGRFFTFSHIFHDIIDTT 180
KRLR L+ R S H +RY A EYG +R H FF S + D I +
Sbjct 91 LKRLRRNLEERKRSKHPIRYYACGEYGTRGTQRPHYHIIFFGVSDLDLDFIKSV 144
>gi|77020121|ref|YP_338244.1| putative replication protein [Chlamydia phage 4]
gi|59940020|gb|AAX12549.1| putative replication protein [Chlamydia phage 4]
Length=315
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (7%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
++++PC +C C + A+ WS+R + E+ + Q F+TLTY ++HLP+NG + L
Sbjct 50 WILMPCRRCKFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDQHLPENGSLVRNHPTL 108
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYG 153
F +RLR + H +RY EYG
Sbjct 109 FLRRLREHIS----PHKIRYFGCGEYG 131
Lambda K H a alpha
0.325 0.138 0.451 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 496788675030