bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-34_CDS_annotation_glimmer3.pl_2_3
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094325|emb|CDL65711.1| unnamed protein product 42.7 0.003
gi|545466729|ref|WP_021703231.1| hypothetical protein 36.2 1.4
gi|491043802|ref|WP_004905465.1| nucleotide-binding protein 36.2 1.5
gi|494725497|ref|WP_007461363.1| UPF0234 protein YajQ 36.2 1.6
gi|586611560|gb|AHJ75006.1| nucleotide-binding protein 35.4 2.7
gi|499013745|ref|XP_004537612.1| PREDICTED: NF-kappa-B essential... 35.8 3.4
gi|659907744|gb|KEK21553.1| Swarming motility protein SwrC 35.4 4.5
gi|543217847|ref|WP_021023238.1| nucleotide-binding protein 34.3 7.5
gi|491052900|ref|WP_004914551.1| putative nucleotide-binding pro... 34.3 8.5
gi|496196903|ref|WP_008916740.1| putative nucleotide-binding pro... 34.3 8.6
>gi|575094325|emb|CDL65711.1| unnamed protein product [uncultured bacterium]
Length=107
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/94 (27%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query 4 NTKPDYKSVECNFDVRKDFERTKPNLGLTPQQVADMAKRGIPVSPMNVN-FIDVNGDASW 62
N + Y V C + E L +TP + +A++G+PVS N N F + D+
Sbjct 14 NPREVYHRVTCRRTISD--EPVVSGLAITPSDIEKLARQGVPVSVPNANSFYSI--DSGL 69
Query 63 NIEPQFRRDMDMATAWEMEKASQRKALQVLRQKK 96
+ P+ + D D T WE+ + S+ + ++ +++K
Sbjct 70 EVPPELKVDADRNTLWELSQQSKARIMKARKREK 103
>gi|545466729|ref|WP_021703231.1| hypothetical protein [Vibrio proteolyticus]
gi|543443778|dbj|GAD65239.1| hypothetical protein VPR01S_01_00120 [Vibrio proteolyticus NBRC
13287]
Length=161
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 49/85 (58%), Gaps = 7/85 (8%)
Query 4 NTKPDYKSVECNFDVRKDFERTKPNLG-LTPQQV-----ADMAKRGIPVSPMNVNFIDVN 57
+T+ D+++VE +FD++KD + G +Q+ A++ KRG+ V+ M + +
Sbjct 27 STRFDFRNVEASFDIQKDDSVKLSSEGDFQLKQMRDILRANLTKRGVDVNAMEAKDAEAS 86
Query 58 GDASWNIEPQFRRDMDMATAWEMEK 82
G +W+ + F++ +D ATA ++ K
Sbjct 87 G-KNWHQQVVFKQGIDAATAKKIVK 110
>gi|491043802|ref|WP_004905465.1| nucleotide-binding protein [Providencia rettgeri]
gi|291312441|gb|EFE52894.1| hypothetical protein PROVRETT_08369 [Providencia rettgeri DSM
1131]
Length=163
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query 8 DYKSVECNFDVRKDFERTKPN-------LGLTPQQVADMAKRGIPVSPMNVNFIDVNGDA 60
D+K+VE +F++ E K L L MAKRGI + +NV V+
Sbjct 31 DFKNVEASFELNDKNESVKITSESDFQVLQLVDILREKMAKRGIDGAVLNVPEDIVHSGK 90
Query 61 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
++++E F++ +D ATA ++ K + L+V Q
Sbjct 91 TYSVEVTFKQGIDAATAKKIVKLIKDSKLKVQAQ 124
>gi|494725497|ref|WP_007461363.1| UPF0234 protein YajQ [Photobacterium sp. AK15]
gi|441430406|gb|ELR67856.1| UPF0234 protein YajQ [Photobacterium sp. AK15]
Length=160
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (7%)
Query 5 TKPDYKSVECNFDVRKDFERTKPNLGLTPQQVAD-----MAKRGIPVSPMNVNFIDVNGD 59
T+ D++ VE +F++ K+ + QQ+ D +AKRG+ M + I V+
Sbjct 28 TRFDFRGVEASFELNKEVVKVVAEADFQIQQMMDIFRGNLAKRGVDARAMELKDI-VHSG 86
Query 60 ASWNIEPQFRRDMDMATAWEMEKASQRKALQV 91
++ E F++ +D TA ++ KA + ++V
Sbjct 87 KTFYQEVLFKQGIDSLTAKKVVKAIKESKIKV 118
>gi|586611560|gb|AHJ75006.1| nucleotide-binding protein [Kosakonia sacchari SP1]
Length=163
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (53%), Gaps = 9/99 (9%)
Query 4 NTKPDYKSVECNFDVRKDFERTKPNLGLTPQQV--------ADMAKRGIPVSPMNVNFID 55
T+ D+++VE FD+ ++ ++T L + QV A + KRGI + ++V
Sbjct 27 GTRFDFRNVEATFDLNEE-KQTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPEEF 85
Query 56 VNGDASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
V+ +W +E + ++ +D ATA ++ K + L+V Q
Sbjct 86 VHSGKTWFVEAKLKQGIDAATAKKIIKLIKDSKLKVQAQ 124
>gi|499013745|ref|XP_004537612.1| PREDICTED: NF-kappa-B essential modulator-like [Ceratitis capitata]
Length=518
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/101 (30%), Positives = 46/101 (46%), Gaps = 15/101 (15%)
Query 6 KPDYKSVECNFDVRKDFERTKPNLGLTPQQVADMAKRGIPVSPMNVNFIDVNGDASWNIE 65
K +Y + + V KDFER L +++DM K+ I +N + VN AS +
Sbjct 313 KSEYVTRHEHERVIKDFERNMSQLLAEKLEISDMQKQYID----EINCLKVNLTASEEMV 368
Query 66 PQFRRDMDMATAWEMEKASQ-----------RKALQVLRQK 95
Q R D+ + A + EK Q R+ L +LRQ+
Sbjct 369 NQLRSDIALLKANDKEKTDQFELYALQRDEMREELGILRQQ 409
>gi|659907744|gb|KEK21553.1| Swarming motility protein SwrC [Bacillus manliponensis]
Length=1031
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (10%)
Query 30 GLTPQQVADMAKRGIPVSPMNVNFIDVNGDASW------NIEPQFRRDMDMATAWEMEKA 83
G TP+ VA+ I N+N ++V AS+ IE F +DMD ATA E+E+A
Sbjct 54 GATPEDVAENVSEPIEQQIQNLNGVNVVSSASYQNASSIQIEYDFEKDMDKATA-EVEEA 112
Query 84 SQRKALQVLRQK 95
+ L QK
Sbjct 113 LSKVTLPEGTQK 124
>gi|543217847|ref|WP_021023238.1| nucleotide-binding protein [Salinivibrio costicola]
Length=160
Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (51%), Gaps = 6/95 (6%)
Query 5 TKPDYKSVECNFDVRKDFERTKPNLGLTPQQVADM-----AKRGIPVSPMNVNFIDVNGD 59
T+ D++ VE NFD+ K+ + Q+ DM AKRG+ M++ + V+
Sbjct 28 TRFDFRGVEANFDLDKEAVKVIAEADFQVNQMMDMLRSNLAKRGVDARAMDIQEM-VHSG 86
Query 60 ASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
S++ + +F+ ++ A ++ KA + ++V Q
Sbjct 87 KSFSQQVKFKNGIETPVAKKITKAIKDAKMKVQTQ 121
>gi|491052900|ref|WP_004914551.1| putative nucleotide-binding protein [Providencia rettgeri]
gi|414092218|gb|EKT53897.1| putative nucleotide-binding protein [Providencia rettgeri Dmel1]
Length=163
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/94 (29%), Positives = 46/94 (49%), Gaps = 7/94 (7%)
Query 8 DYKSVECNFDVRKDFERTKPN-------LGLTPQQVADMAKRGIPVSPMNVNFIDVNGDA 60
D+K+VE +F++ E K L L MAKRGI + +NV V+
Sbjct 31 DFKNVEASFELNDKNESVKITSESDFQVLQLVDILREKMAKRGIDGAVLNVPEDIVHSGK 90
Query 61 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
++++E F++ +D A A ++ K + L+V Q
Sbjct 91 TYSVEVTFKQGIDAAIAKKIVKLIKDSKLKVQAQ 124
>gi|496196903|ref|WP_008916740.1| putative nucleotide-binding protein [Providencia sneebia]
gi|414091854|gb|EKT53535.1| putative nucleotide-binding protein [Providencia sneebia DSM
19967]
Length=163
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/98 (29%), Positives = 48/98 (49%), Gaps = 7/98 (7%)
Query 4 NTKPDYKSVECNFDVRKDFERTKPN-------LGLTPQQVADMAKRGIPVSPMNVNFIDV 56
T+ D+K+V +F++ + E K L L MAKRGI + +NV V
Sbjct 27 TTRWDFKNVSASFELNEKNESIKVTSESDFQVLQLLDILREKMAKRGIDGAVLNVPEDIV 86
Query 57 NGDASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
+ S+++E ++ +D A A ++ KA + L+V Q
Sbjct 87 HSGKSYSVEVTLKQGIDTAIAKKIVKAIKDSKLKVQAQ 124
Lambda K H a alpha
0.316 0.131 0.393 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 428991919341