bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-35_CDS_annotation_glimmer3.pl_2_4
Length=343
Score E
Sequences producing significant alignments: (Bits) Value
gi|547312922|ref|WP_022044634.1| putative replication initiation... 125 2e-29
gi|609718275|emb|CDN73649.1| conserved hypothetical protein 95.1 2e-19
gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 80.9 3e-14
gi|547920048|ref|WP_022322419.1| putative replication protein 79.7 6e-14
gi|492501778|ref|WP_005867316.1| hypothetical protein 79.3 1e-13
gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 75.5 4e-12
gi|575094374|emb|CDL65755.1| unnamed protein product 71.6 2e-10
gi|649562725|gb|KDS68909.1| hypothetical protein M096_3339 58.5 1e-06
gi|313766930|gb|ADR80656.1| putative replication initiation protein 59.3 1e-06
gi|47566147|ref|YP_022485.1| nonstructural protein 56.6 9e-06
>gi|547312922|ref|WP_022044634.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
gi|524208442|emb|CCZ76638.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
Length=320
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 137/271 (51%), Gaps = 43/271 (16%)
Query 2 CLYPKLIPNKRYLPTKKN----------GGIPPVCPDERLRYVTAACGDCYECRKQKQRQ 51
C PK+I N+RY G P PD L CG C+ C+K Q
Sbjct 3 CEQPKVIVNRRYANMTNTEIVNYAKVYYGCFWP--PDYILE---VPCGYCHSCQKSYNNQ 57
Query 52 WMVRMSEENRQTP--NAYFLTLTIDDKSYKQIKQKYNLKDNNDIATKAIRLCLERVRKLT 109
+ +R+ E R+ P F+TLT +D S ++ KD N KA+RL L+R RK+
Sbjct 58 YRIRLLYELRKYPPGTCLFVTLTFNDDSLEKFS-----KDTN----KAVRLFLDRFRKVY 108
Query 110 GKSVKHWFITELGHEKTERLHLHGIVWGL-------------GNGEKVTNNWKYGITFTG 156
GK ++HWF+ E G R H HGI++ + G+ + + WKYG F G
Sbjct 109 GKQIRHWFVCEFG-TLHGRPHYHGILFNVPQALIDGYDSDMPGHHPLLASCWKYGFVFVG 167
Query 157 YFVNEKTIKYITKYMLKVDEKHPKFRGKVLCSAGIGAGYLKREDAKRHVYIPGKTNESYR 216
Y V+++T YITKY+ K K R +V+ S GIG+ YL E++ H + + + +
Sbjct 168 Y-VSDETCSYITKYVTKSINGD-KVRPRVISSFGIGSNYLNTEESSLHK-LGNQRYQPFM 224
Query 217 MRNGEKLNLPIYYRNKIFTEEEREKLFLDKI 247
+ NG + +P YY NKIF++ +++ + +D++
Sbjct 225 VLNGFQQAMPRYYYNKIFSDVDKQNMVVDRL 255
>gi|609718275|emb|CDN73649.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=265
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (49%), Gaps = 21/211 (10%)
Query 38 CGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIAT-- 95
CG C ECRK + W R++EE + + +A+F+TLT Y + Y+ DN I+
Sbjct 25 CGKCLECRKARTNSWFARLTEELKVSKSAHFVTLT-----YSDVYLPYS--DNGLISLDY 77
Query 96 KAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWKYGITFT 155
+ +L ++R RKL +K++ + E G +T R H H IV+G+ N + W+ G
Sbjct 78 RDFQLFMKRARKLQKSKIKYFLVGEYG-AQTYRPHYHAIVFGVENIDAFLGEWRMGNVHA 136
Query 156 GYFVNEKTIKYITKYMLK-------VDEKHPKFRGKVLCSAGIGAGYLKREDAKRHVYIP 208
G V K+I Y KY K D + K L S G+G +L K Y
Sbjct 137 GT-VTAKSIYYTLKYCTKSITEGPDKDPDDDRKPEKALMSKGLGLSHLTESMIK---YYK 192
Query 209 GKTNESYRMRNGEKLNLPIYYRNKIFTEEER 239
+ S+ + G + LP YYR+K+F++ E+
Sbjct 193 DDVSRSFSLLGGTTIALPRYYRDKVFSDIEK 223
>gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649560564|gb|KDS66872.1| hypothetical protein M095_2449 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649561011|gb|KDS67298.1| hypothetical protein M095_2409 [Parabacteroides distasonis str.
3999B T(B) 4]
Length=284
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/272 (25%), Positives = 126/272 (46%), Gaps = 28/272 (10%)
Query 35 TAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSY--KQIKQKYNLKDNND 92
CG C CRK K++ W+ R+ E + P + F+TLT DD+ I +
Sbjct 14 AVPCGRCVNCRKNKRQSWVYRLQAEADEYPFSLFVTLTYDDEHIPTAMIGEDLFKTTVGV 73
Query 93 IATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNN 147
++ + I+L ++R+RK + +F+T + R H H I++G G+ +
Sbjct 74 VSKRDIQLFMKRLRKKYAQYRLRYFLTSEYGSQGGRPHYHMILFGFPFTGKHGGDLLAEC 133
Query 148 WKYGITFTGYFVNEKTIKYITKYMLK------VDEKHPKFRGKVLCS--AGIGAGYLKRE 199
WK G + + K I Y+TKYM + + + +++ +LCS GIG +L+ +
Sbjct 134 WKNGFV-QAHPLTTKEISYVTKYMYEKSMIPDILKGVKEYQPFMLCSKMPGIGYHFLREQ 192
Query 200 DAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTE-------EEREKLFLDKIEKGII 252
+ P + R NG ++ +P YY +K++ + E RE F++++++
Sbjct 193 ILDFYRLHP---RDYVRAFNGMRMAMPRYYADKLYDDDMKEYLKELREAFFINQMQQEWY 249
Query 253 YILGIKIDLK--TEELRYNGVLASERERCERL 282
+ + L+ ++L LA ER ++L
Sbjct 250 HYINTSPRLRYIADQLETESKLAYERRAEDKL 281
>gi|547920048|ref|WP_022322419.1| putative replication protein [Parabacteroides merdae CAG:48]
gi|524592960|emb|CDD13572.1| putative replication protein [Parabacteroides merdae CAG:48]
Length=278
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 36/237 (15%)
Query 38 CGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNN--DIAT 95
CG C CR+ K++ W+ R+ E ++ P + F+TLT DD+ + +L N ++
Sbjct 12 CGWCVNCRQNKRQSWVYRLQAEAKEYPLSLFVTLTYDDEHLPIERIGSDLFQTNVAVVSK 71
Query 96 KAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNNWKY 150
+ ++L ++R+RK +F+T K R H H I++G G+ + W+
Sbjct 72 RDVQLFMKRLRKKYEDYKMRYFVTSEYGAKNGRPHYHMILFGFPFTGKMAGDLLAECWQN 131
Query 151 GITFTGYFVNEKTIKYITKYM--------LKVDEKHPKFRGKVLCS--AGIGAGYLKR-- 198
G + + K I Y+ KYM + DEK K++ +LCS GIG G++K
Sbjct 132 GFV-QAHPLTIKEIAYVCKYMYEKSMCPEILRDEK--KYKPFMLCSRNPGIGFGFMKADI 188
Query 199 -EDAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKI-------FTEEEREKLFLDKI 247
E +RH + R G K+ +P YY +K+ F +E RE+ F K+
Sbjct 189 IEFYRRH------PRDYVRAWAGHKMAMPRYYADKLYDDDMKAFLKEMREEFFRHKM 239
>gi|492501778|ref|WP_005867316.1| hypothetical protein [Parabacteroides distasonis]
gi|409230407|gb|EKN23271.1| hypothetical protein HMPREF1059_03256 [Parabacteroides distasonis
CL09T03C24]
Length=284
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 26/237 (11%)
Query 35 TAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSY--KQIKQKYNLKDNND 92
CG C CRK K++ W+ R+ E + P + F+TLT DD+ I +
Sbjct 14 AVPCGRCVNCRKNKRQSWVYRLQAEADEYPFSLFVTLTYDDEHMPTAMIGEDLFKSTVGV 73
Query 93 IATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNN 147
++ + I+L ++R+RK + +F+T + R H H I++G G+ +
Sbjct 74 VSKRDIQLFMKRLRKKYDQYRLRYFLTSEYGSQGGRPHYHMILFGFPFTGKHGGDLLAEC 133
Query 148 WKYGITFTGYFVNEKTIKYITKYMLK------VDEKHPKFRGKVLCS--AGIGAGYLKRE 199
WK G + + K I Y+TKYM + + + +++ +LCS GIG +L+ +
Sbjct 134 WKNGFV-QAHPLTTKEIAYVTKYMYEKSMVPDILKDVKEYQPFMLCSRIPGIGYHFLREQ 192
Query 200 DAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTE-------EEREKLFLDKIEK 249
+ P + R NG ++ +P YY +K++ + E RE F++++++
Sbjct 193 ILDFYRLHP---RDYVRAFNGMRMAMPRYYADKLYDDDMKEYLKELREAFFINQMQQ 246
>gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 [Necator americanus]
Length=345
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 111/249 (45%), Gaps = 43/249 (17%)
Query 25 VCPDERLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQK 84
V P L V CG C C++++ W+ R+ +E Q NA F+TLT D + K
Sbjct 9 VLPKAALEKVPVPCGRCPPCKRRRVDSWVFRLLQEELQHENASFVTLTYDTRFVPISKNG 68
Query 85 YNLKDNNDIATKAIRLCLERVRKLT-GKSVKHWFITELGHEKTERLHLHGIVWGLGNGEK 143
+ D + ++R+RKL G+ +K++ E G ++ R H H I++G+
Sbjct 69 FMTLDRGEFPR-----YMKRLRKLVPGRKLKYYMCGEYGSQRF-RPHYHAIIFGVPQDSL 122
Query 144 VTNNWKYGITFTG--------YFVNEKTIKYITKYMLKV--------DEKHPKFRGKVLC 187
+ W T G V K+I Y KY+ K D++ P+F L
Sbjct 123 FADAW----TLNGDSLGGVVVGTVTGKSIAYTMKYIDKSTWKQKHGRDDRVPEFS---LM 175
Query 188 SAGIGAGYLKREDAKRHVYIPGKTNESYRM----RNGEKLNLPIYYRNKIFTEEEREK-- 241
S G+G YL + + H + R+ G ++ +P YYR KI+++++ +K
Sbjct 176 SKGMGVSYLTPQMVEYH------KEDISRLFCTREGGSRIAMPRYYRQKIYSDDDLKKQV 229
Query 242 -LFLDKIEK 249
L + +E+
Sbjct 230 VLIAESVER 238
>gi|575094374|emb|CDL65755.1| unnamed protein product [uncultured bacterium]
Length=487
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (45%), Gaps = 20/158 (13%)
Query 35 TAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNND-- 92
CG CY+C+ K W VR SEE +YF TLT+D + I L D +
Sbjct 25 VVPCGHCYDCKSAKTTDWQVRCSEELNNNSQSYFYTLTLDPRF---IDTYGTLPDGSPRY 81
Query 93 -IATKAIRLCLERVRKLTGK---SVKHWFITELGHEKTERLHLHGIVWGLGNGEK----- 143
+ I+L L+R+RK K S+K+ + ELG E T R H H I + +
Sbjct 82 VFNKRHIQLFLKRLRKALSKYNISLKYVIVGELG-ETTHRPHYHAIFYLSSSVNPFKFRI 140
Query 144 -VTNNWKYGITFT----GYFVNEKTIKYITKYMLKVDE 176
V N+W G + G +N + Y+ KYM K D
Sbjct 141 MVRNSWSLGFIKSGDNNGIILNNDAVSYVIKYMHKTDS 178
>gi|649562725|gb|KDS68909.1| hypothetical protein M096_3339 [Parabacteroides distasonis str.
3999B T(B) 6]
Length=250
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 112/255 (44%), Gaps = 36/255 (14%)
Query 56 MSEENRQTPNAYFLTLTIDDKSY--KQIKQKYNLKDNNDIATKAIRLCLERVRKLTGKSV 113
M E + P + F+TLT DD+ I + ++ + I+L ++R+RK +
Sbjct 1 MQAEADEYPFSLFVTLTYDDEHIPTAMIGEDLFKTTVGVVSKRDIQLFMKRLRKKYAQYR 60
Query 114 KHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNNWKYGITFTGYFVNEKTIKYIT 168
+F+T + R H H I++G G+ + WK G + + K I Y+T
Sbjct 61 LRYFLTSEYGSQGGRPHYHMILFGFPFTGKHGGDLLAECWKNGFV-QAHPLTTKEISYVT 119
Query 169 KYMLK----------VDEKHPKFRGKVLCS--AGIGAGYLKREDAKRHVYIPGKTNESYR 216
KYM + V E P +LCS GIG +L+ + + P + R
Sbjct 120 KYMYEKSMIPDILKGVKEYQP----FMLCSKMPGIGYHFLREQILDFYRLHP---RDYVR 172
Query 217 MRNGEKLNLPIYYRNKIFTE-------EEREKLFLDKIEKGIIYILGIKIDLK--TEELR 267
NG ++ +P YY +K++ + E RE F++++++ + + L+ ++L
Sbjct 173 AFNGMRMAMPRYYADKLYDDDMKEYLKELREAFFINQMQQEWYHYINTSPRLRYIADQLE 232
Query 268 YNGVLASERERCERL 282
LA ER ++L
Sbjct 233 TESKLAYERRAEDKL 247
>gi|313766930|gb|ADR80656.1| putative replication initiation protein [Uncultured Microviridae]
Length=402
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (27%), Positives = 74/152 (49%), Gaps = 24/152 (16%)
Query 38 CGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIATKA 97
CG C+ CR Q R+W +R E + + F+TLTI+ ++ ++ + ++L+ K
Sbjct 130 CGQCWGCRLQHSREWAIRCMHEAQMHDHNCFITLTINPETLERRPRPWSLE------KKE 183
Query 98 IRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWG------------LGN----G 141
+ + R+R+ GK +K++ E G E +R H H I++G LGN
Sbjct 184 FQEFVHRLRRKIGKKIKYFHCGEYGDE-NKRPHYHAIIFGYDFPDKQLWERKLGNELYIS 242
Query 142 EKVTNNWKYGITFTGYFVNEKTIKYITKYMLK 173
++ N W +G G E + Y+ +Y++K
Sbjct 243 PELENLWPHGYHRIGACTYE-SAHYVARYVMK 273
>gi|47566147|ref|YP_022485.1| nonstructural protein [Chlamydia phage 3]
gi|47522482|emb|CAD79483.1| nonstructural protein [Chlamydia phage 3]
Length=315
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 111/261 (43%), Gaps = 61/261 (23%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKY 85
P+E R+R+V C C CR Q + W R E FLTLT +D+
Sbjct 43 PEEYRVRWVVKPCLKCRFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDR--------- 93
Query 86 NLKDNNDIATKAIRLCLERVRK-LTGKSVKHWFITELGHEKTERLHLHGIVWGL------ 138
+L +N + RL L R+R+ + ++++ E G K +R H H +++
Sbjct 94 HLPENGSLVRDHPRLFLRRLREHIYPHKIRYFGCGEYG-SKLQRPHYHLLIYNYDFPDKK 152
Query 139 ------GN----GEKVTNNWKYGITFTGYFVNEKTIKYITKYMLK----------VDEKH 178
GN EK+ W +G + G V ++ Y+ +Y LK ++
Sbjct 153 LLSKKRGNPLFVSEKLMQLWPFGFSTVGS-VTRQSAGYVARYSLKKVNGDSSQDHYGQRL 211
Query 179 PKFRGKVLCS--AGIGAGYLKREDAKRHVY-----IPGKTNESYRMRNGEKLNLPIYYRN 231
P+F ++CS GIGA + E KR VY + +S++ R P Y +
Sbjct 212 PEF---LMCSLKPGIGADWY--EKYKRDVYPQDYLVVQDKGKSFKTR-------PPRYYD 259
Query 232 KI---FTEEEREKLFLDKIEK 249
K+ F EE E++ ++EK
Sbjct 260 KLHSRFDPEEMEEIKQRRVEK 280
Lambda K H a alpha
0.320 0.138 0.423 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2010380126625