bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-37_CDS_annotation_glimmer3.pl_2_2
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
gi|672185326|ref|XP_008814027.1| hypothetical protein C922_00188 38.5 2.2
gi|520785453|ref|WP_020289627.1| phage integrase 36.6 3.9
gi|655191688|ref|WP_028617992.1| integrase 37.4 4.2
gi|495280531|ref|WP_008005285.1| integrase 36.6 6.2
gi|519251247|gb|EPN29015.1| phage integrase family protein 36.2 6.8
gi|495648398|ref|WP_008372977.1| phage integrase 36.6 7.4
gi|516296761|ref|WP_017700068.1| integrase 36.6 7.7
gi|506244186|ref|WP_015763961.1| hypothetical protein 36.6 8.0
gi|452845332|gb|EME47265.1| glycosyltransferase family 2 protein 36.6 8.4
gi|645567430|gb|KDP84229.1| ChrB 36.2 9.6
>gi|672185326|ref|XP_008814027.1| hypothetical protein C922_00188 [Plasmodium inui San Antonio
1]
gi|577146036|gb|EUD69325.1| hypothetical protein C922_00188 [Plasmodium inui San Antonio
1]
Length=975
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query 7 EIMNKYLPAQQQMQLYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTR-GLNISNEQ 65
E+ NKY+P+ ++ SA+L YA G L++ +I N A +N +L R+R G + + Q
Sbjct 235 EVANKYIPSSFVSKINKVSASLSKNYANGSLNIQSIMNGNA-FNRNLERSRVGRSAGSHQ 293
Query 66 SEKLSEYFIRAMKEEYQANAAYYRSYKSIAGAVATGR 102
F + + + + S +G TGR
Sbjct 294 GGGGYGGFSNQAAFSSRGGVSSHAPFSSFSGQAPTGR 330
>gi|520785453|ref|WP_020289627.1| phage integrase [Pseudomonas sp. CFII64]
gi|515440281|gb|EPJ88466.1| phage integrase [Pseudomonas sp. CFII64]
Length=158
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query 21 LYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRGLNISNEQSEKLS 70
L Y+ +L +Q QG L++AT +NRL+ N +LA RG +QS K+S
Sbjct 71 LLDYAGHLRNQVEQGSLAIATAQNRLSSVNRTLAALRG-----DQSVKVS 115
>gi|655191688|ref|WP_028617992.1| integrase [Pseudomonas sp. 2-92(2010)]
Length=326
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 21 LYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRG 58
L SY+A+L Q QG + +AT +NRL+ N +LA RG
Sbjct 71 LNSYAAHLCQQIQQGEICIATAQNRLSSVNRTLAALRG 108
>gi|495280531|ref|WP_008005285.1| integrase [Pseudomonas sp. GM50]
gi|398184108|gb|EJM71568.1| hypothetical protein PMI30_00247 [Pseudomonas sp. GM50]
Length=326
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
Query 21 LYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRG 58
L Y+ +L Q QG +S+AT +NRL+ N ++A RG
Sbjct 71 LLDYAGHLCDQVEQGAISIATAQNRLSSVNRTMAALRG 108
>gi|519251247|gb|EPN29015.1| phage integrase family protein, partial [Pseudomonas syringae
pv. actinidiae ICMP 19096]
Length=175
Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 21 LYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRG 58
L+SY+A+L Q QG + +AT NRL+ N +LA RG
Sbjct 71 LHSYAAHLRLQIQQGEICIATALNRLSSVNRTLAALRG 108
>gi|495648398|ref|WP_008372977.1| phage integrase, partial [Pseudomonas sp. M47T1]
gi|388274961|gb|EIK94553.1| phage integrase, partial [Pseudomonas sp. M47T1]
Length=289
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
Query 21 LYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRG 58
L Y+ +L Q QG LS+AT +NRL+ N +LA RG
Sbjct 34 LLDYAGHLRQQVEQGELSIATAQNRLSSINRTLAALRG 71
>gi|516296761|ref|WP_017700068.1| integrase [Pseudomonas syringae]
gi|519155027|gb|EPM46161.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 19098]
gi|519175344|gb|EPM64941.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 18804]
gi|519237897|gb|EPN17573.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 19100]
gi|519246881|gb|EPN25196.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 19099]
gi|519255841|gb|EPN32804.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 18883]
gi|519261945|gb|EPN37984.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 19095]
gi|519282823|gb|EPN52423.1| phage integrase family protein [Pseudomonas syringae pv. actinidiae
ICMP 19094]
Length=326
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/123 (27%), Positives = 52/123 (42%), Gaps = 26/123 (21%)
Query 21 LYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRG---------------------L 59
L+SY+A+L Q QG + +AT NRL+ N +LA RG
Sbjct 71 LHSYAAHLRLQIQQGEICIATALNRLSSVNRTLAALRGDQHVKIASPSRALSMQRSSVRT 130
Query 60 NISNEQSEKLSEYFIRAMKEEYQANAAYYRSYKSIAGAVATGRGNLDIYDSQLSRLQRDM 119
N Q + I +++E+ ++R + A ATG + + L RLQR+
Sbjct 131 RAPNGQDHQQLSRVIESLREQQ-----HHRVAAIVCLARATGMRLRETILADLPRLQREA 185
Query 120 QEL 122
+ L
Sbjct 186 KHL 188
>gi|506244186|ref|WP_015763961.1| hypothetical protein [Halomicrobium mukohataei]
gi|257389053|ref|YP_003178826.1| hypothetical protein Hmuk_3014 [Halomicrobium mukohataei DSM
12286]
gi|257171360|gb|ACV49119.1| hypothetical protein Hmuk_3014 [Halomicrobium mukohataei DSM
12286]
Length=447
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 55/104 (53%), Gaps = 0/104 (0%)
Query 8 IMNKYLPAQQQMQLYSYSANLFSQYAQGLLSLATIKNRLAEYNESLARTRGLNISNEQSE 67
++ +Y+ A ++M ++ + +Q + L+T + + Y+++ AR RG++ ++ SE
Sbjct 247 VLFRYIAAVERMTDENFELQTITSGSQEVARLSTNGDDIVLYHDNSARDRGVSFESDVSE 306
Query 68 KLSEYFIRAMKEEYQANAAYYRSYKSIAGAVATGRGNLDIYDSQ 111
K S+ R + E +A A +++ ATGR ++ + + Q
Sbjct 307 KPSKALSRTERIEREARAVADSYFRNRTFRSATGRPDVIVLEVQ 350
>gi|452845332|gb|EME47265.1| glycosyltransferase family 2 protein [Dothistroma septosporum
NZE10]
Length=1847
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 31/56 (55%), Gaps = 1/56 (2%)
Query 79 EEYQANAA-YYRSYKSIAGAVATGRGNLDIYDSQLSRLQRDMQELFASRERYSMMN 133
EE Q A YY + ++ G + +G G L I D Q+ R + DMQ L + R+R+ N
Sbjct 446 EEVQVPATEYYDNVDAVRGLLKSGNGLLSILDDQMKRGKTDMQFLESLRKRFENKN 501
>gi|645567430|gb|KDP84229.1| ChrB [Cupriavidus sp. SK-3]
Length=320
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query 60 NISNEQSEKLSEYFIRAMKEEYQANAAYYRS-------YKSIAGAVATGRGNLD-IYDSQ 111
++++ ++ + ++ ++ + +AA YR+ Y + +V+ R L + +++
Sbjct 57 ELADDTQQQDGQAWLLTVQPQEDDDAAAYRALFDRSSDYAELLASVSEARQTLSSLSEAE 116
Query 112 LSRLQRDMQELFASRERYSMMNRKAYYRAQQIWRDFIGGI 151
L+RLQR + ++ + + +A RA+ WRDF G I
Sbjct 117 LNRLQRRLGRIYEAIRKIDFFPNEASLRAEAQWRDFTGAI 156
Lambda K H a alpha
0.318 0.128 0.350 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 442789906005