bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters



Query= Contig-8_CDS_annotation_glimmer3.pl_2_1

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|588321290|emb|CCW60027.1|  unnamed protein product                 36.2    2.5
gi|594148918|emb|CCW66999.1|  unnamed protein product                 35.0    6.4
gi|663693131|ref|WP_030470189.1|  hypothetical protein                34.3    7.8


>gi|588321290|emb|CCW60027.1| unnamed protein product [Phytomonas sp. isolate EM1]
Length=1232

 Score = 36.2 bits (82),  Expect = 2.5, Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (56%), Gaps = 7/34 (21%)

Query  16   SAQHFKSEDEAIHWWARF-------PTSDEWEII  42
            +  HFK E+E IH W RF       PT+D W+ I
Sbjct  683  TKHHFKREEELIHIWGRFSLIASLIPTADHWDSI  716


>gi|594148918|emb|CCW66999.1| unnamed protein product [Phytomonas sp. isolate Hart1]
Length=1232

 Score = 35.0 bits (79),  Expect = 6.4, Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (56%), Gaps = 7/34 (21%)

Query  16   SAQHFKSEDEAIHWWARF-------PTSDEWEII  42
            + Q FK E+E IH W RF       PT+D W+ I
Sbjct  683  TKQRFKKEEELIHVWGRFSLIASLLPTTDHWDSI  716


>gi|663693131|ref|WP_030470189.1| hypothetical protein [Lechevalieria aerocolonigenes]
Length=238

 Score = 34.3 bits (77),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 26/84 (31%), Positives = 34/84 (40%), Gaps = 4/84 (5%)

Query  5   MLLKHFEKRIVSAQHFKSEDEAIHWWARFPTSDEWEIIYLSERKRSGHRYALTYAKCDER  64
           MLLK  ++    AQ     +EA  WW R    D W +  +    R   R AL    C ER
Sbjct  1   MLLKTLQEHAARAQPAAHVEEAGGWWLRHSPGDAWWVSAVLPHDRE-DRVALAEEFCAER  59

Query  65  GILYSKYI---ICFSKKEAVLLAR  85
           G      I   +C    + VL +R
Sbjct  60  GSGVRFQITPGVCADDLDGVLDSR  83



Lambda      K        H        a         alpha
   0.322    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 436588657356