bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-9_CDS_annotation_glimmer3.pl_2_6
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
gi|490418709|ref|WP_004291032.1| hypothetical protein 615 0.0
gi|496050829|ref|WP_008775336.1| hypothetical protein 615 0.0
gi|575094354|emb|CDL65742.1| unnamed protein product 441 2e-144
gi|494822885|ref|WP_007558293.1| hypothetical protein 416 1e-134
gi|547226430|ref|WP_021963493.1| putative uncharacterized protein 364 2e-115
gi|575094321|emb|CDL65708.1| unnamed protein product 200 8e-53
gi|517172762|ref|WP_018361580.1| hypothetical protein 190 1e-49
gi|494308783|ref|WP_007173938.1| hypothetical protein 184 1e-47
gi|496521299|ref|WP_009229582.1| capsid protein 182 5e-47
gi|494306153|ref|WP_007173049.1| hypothetical protein 182 5e-47
>gi|490418709|ref|WP_004291032.1| hypothetical protein [Bacteroides eggerthii]
gi|217986636|gb|EEC52970.1| putative capsid protein (F protein) [Bacteroides eggerthii DSM
20697]
Length=578
Score = 615 bits (1587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/538 (58%), Positives = 381/538 (71%), Gaps = 29/538 (5%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
+NTAAFAR+REYYDF+FVPYDLLWNKANT LTQMYDNPQHA+ P L G MP+
Sbjct 61 VNTAAFARIREYYDFFFVPYDLLWNKANTVLTQMYDNPQHAVSIDPTRNFVLSGEMPYMT 120
Query 61 LSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRP 120
+I+ Y+N+L++ S K+NYFGYNR+ S KL+E LGYGN Y ++ + P
Sbjct 121 SEAIASYINALSTASALADYKSNYFGYNRSKSSVKLLEYLGYGN---YESFLTDDWNTAP 177
Query 121 LHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYS-DF 179
L NLN ++F LLAYQKIY+D+YRDSQWERVSPS FNVDY+ S M L YS +F
Sbjct 178 LMANLNHNIFGLLAYQKIYSDFYRDSQWERVSPSTFNVDYL----DGSSMNLDNAYSTEF 233
Query 180 YENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAAlinsritssnstt 239
Y+NY+ FDLRYCNWQKDLFHGV+P+QQYG+ A S++ P V G +
Sbjct 234 YQNYNFFDLRYCNWQKDLFHGVLPHQQYGETAVASIT-PDVTGK-----------LTLSN 281
Query 240 tlrFPTDPAIPDATPLLTHPSF------SILALRQAEFLQKWKEITQSGNKDYKEQVEKH 293
T P T P+F SIL LRQAEFLQKWKEITQSGNKDYK+Q+EKH
Sbjct 282 FSTVGTSPTTASGTATKNLPAFDTVGDLSILVLRQAEFLQKWKEITQSGNKDYKDQLEKH 341
Query 294 WNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGR 353
W VS GDGFSE+CTYLGG+SSS+DINEV+N NITGS AADIAGKG GV+NG INFNS GR
Sbjct 342 WGVSVGDGFSELCTYLGGVSSSIDINEVINTNITGSAAADIAGKGVGVANGEINFNSNGR 401
Query 354 YGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLP 413
YG++MCIYHCLPL+DYTTD + P+ +VN+ D+AIPEFDRVGMQ++PL + N PL
Sbjct 402 YGLIMCIYHCLPLLDYTTDMLDPAFLKVNSTDYAIPEFDRVGMQSMPLVQLMN-PLRSFA 460
Query 414 LSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETP--ESPV 471
+ +GY PRYIDYKT +D S+G FK +L +WVISY N S+ Q + P E
Sbjct 461 NASGLVLGYVPRYIDYKTSVDQSVGGFKRTLNSWVISYGNISVLKQVTLPNDAPPIEPSE 520
Query 472 PNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY 529
P P+ + N+T FKVNP+ L+P+FAV+A +TDQFLCS+FFD+K VRNLDTDGLPY
Sbjct 521 PVPSVAPMNFTFFKVNPDCLDPIFAVQAGDDTNTDQFLCSSFFDIKAVRNLDTDGLPY 578
>gi|496050829|ref|WP_008775336.1| hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448893|gb|EEO54684.1| putative capsid protein (F protein) [Bacteroides sp. 2_2_4]
Length=580
Score = 615 bits (1585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/549 (58%), Positives = 391/549 (71%), Gaps = 49/549 (9%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
LNTAAFARMREYYDFYFVPY+LLWNKANT LTQMYDNPQHA P L G MP
Sbjct 61 LNTAAFARMREYYDFYFVPYNLLWNKANTVLTQMYDNPQHATSYIPSANQALAGVMPNVT 120
Query 61 LSSISRYLNSLASNSTAVTN-KANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKR 119
I+ YLN +A + T + + NYFGY+R+L +AKL+E LGYGN Y YA S +NT+ K
Sbjct 121 CKGIADYLNLVAPDVTTTNSYEKNYFGYSRSLGTAKLLEYLGYGNFYTYATSKNNTWTKS 180
Query 120 PLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSS----GMMLSFN 175
PL NL ++++ +LAYQKIYAD+ RDSQWE+VSPSCFNVDY+ + S+ M+
Sbjct 181 PLSSNLQLNIYGVLAYQKIYADHIRDSQWEKVSPSCFNVDYLSGTVDSAMTIDSMITGQG 240
Query 176 YSDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAAlinsritss 235
++ FY +MFDLRYCNWQKDLFHGV+P QQYGD A++++++ V + +
Sbjct 241 FAPFY---NMFDLRYCNWQKDLFHGVLPRQQYGDTAAVNVNLSNVLSAQYMVQT------ 291
Query 236 nstttlrFPTDPAIPDATPLLTHP---------------SFSILALRQAEFLQKWKEITQ 280
PD P+ P +F++LALRQAEFLQKWKEITQ
Sbjct 292 --------------PDGDPVGGSPFSSTGVNLQTVNGSGTFTVLALRQAEFLQKWKEITQ 337
Query 281 SGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTG 340
SGNKDYK+Q+EKHWNVS G+ +SEM YLGG ++SLDINEVVN NITGSNAADIAGKG
Sbjct 338 SGNKDYKDQIEKHWNVSVGEAYSEMSLYLGGTTASLDINEVVNNNITGSNAADIAGKGVV 397
Query 341 VSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVP 400
V NG I+F++ RYG++MCIYH LPL+DYTTD V+P+ T++N+ DFAIPEFDRVGM++VP
Sbjct 398 VGNGRISFDAGERYGLIMCIYHSLPLLDYTTDLVNPAFTKINSTDFAIPEFDRVGMESVP 457
Query 401 LSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQF 460
L + N PL + +GYAPRYI YKTD+D+S+GAFKT+LK+WV+SYDNQS+ NQ
Sbjct 458 LVSLMN-PLQSSYNVGSSILGYAPRYISYKTDVDSSVGAFKTTLKSWVMSYDNQSVINQL 516
Query 461 GYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVR 520
Y + SP + NYT FKVNPN ++PLFAV A +SIDTDQFLCS+FFDVKVVR
Sbjct 517 NYQDDPNNSP-----GTLVNYTNFKVNPNCVDPLFAVAASNSIDTDQFLCSSFFDVKVVR 571
Query 521 NLDTDGLPY 529
NLDTDGLPY
Sbjct 572 NLDTDGLPY 580
>gi|575094354|emb|CDL65742.1| unnamed protein product [uncultured bacterium]
Length=615
Score = 441 bits (1134), Expect = 2e-144, Method: Compositional matrix adjust.
Identities = 249/575 (43%), Positives = 342/575 (59%), Gaps = 62/575 (11%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
LNT+AFARMREYYDFYFVP++ +WNK ++ +TQM N QHA + + L G MP+
Sbjct 57 LNTSAFARMREYYDFYFVPFEQMWNKFDSCITQMNANVQHASGPTLDDNTPLSGRMPYFT 116
Query 61 LSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRP 120
I+ YLN A+ + + N FG+NR+ + KL++ LGYG+ Y +S +NT++ +P
Sbjct 117 SEQIADYLNDQATAA-----RKNPFGFNRSTLTCKLLQYLGYGD-YNSFDSETNTWSAKP 170
Query 121 LHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYSDFY 180
L YNL +S F LLAYQKIY+D+YR +QWE+ +PS FN+DY+ G+S + +
Sbjct 171 LLYNLELSPFPLLAYQKIYSDFYRYTQWEKTNPSTFNLDYI---KGTSDLQMDLTGLPSD 227
Query 181 ENYSMFDLRYCNWQKDLFHG--------------------VVPNQQYGDVASISMSVPVV 220
+N + FD+RYCN+QKD+FHG V+ N G + S P
Sbjct 228 DN-NFFDIRYCNYQKDMFHGVLPVAQYGSASVVPINGQLNVISNGDSGPIFKTSTPDPGT 286
Query 221 AGSS----------------AAlinsritssnstttlrFPTDPAIPDATPLLTHPSF--- 261
G+S + + S + FP++ + + L +P+
Sbjct 287 PGTSYVTVGGNIGVDNRSFGVSGSTLNVGKSADPSGYGFPSNAST--RSLLWENPNLIIE 344
Query 262 -------SILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISS 314
ILALRQAEFLQKWKE++ SG +DYK Q+EKHW + D S YLGG ++
Sbjct 345 NNQGFYVPILALRQAEFLQKWKEVSVSGEEDYKSQIEKHWGIKVSDFLSHQARYLGGCAT 404
Query 315 SLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFV 374
SLDINEV+N NITG NAADIAGKGT NG I F S+G YG++MCIYH LP++DY V
Sbjct 405 SLDINEVINNNITGDNAADIAGKGTFTGNGSIRFESKGEYGIIMCIYHVLPIVDYVGSGV 464
Query 375 SPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDID 434
S T V+A F IPE D++GM++VPL N S +GYAPRYID+KT +D
Sbjct 465 DHSCTLVDATSFPIPELDQIGMESVPLVRAMNPVKESDTPSADTFLGYAPRYIDWKTSVD 524
Query 435 TSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPL 494
S+G F SL+ W + ++ L + S+ P +P P + + + FKVNP+ ++PL
Sbjct 525 RSVGDFADSLRTWCLPVGDKELTS--ANSLNFPSNPNVEPDSIAAGF--FKVNPSIVDPL 580
Query 495 FAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY 529
FAV ADS++ TD+FLCS+FFDVKVVRNLD +GLPY
Sbjct 581 FAVVADSTVKTDEFLCSSFFDVKVVRNLDVNGLPY 615
>gi|494822885|ref|WP_007558293.1| hypothetical protein [Bacteroides plebeius]
gi|198272099|gb|EDY96368.1| putative capsid protein (F protein) [Bacteroides plebeius DSM
17135]
Length=613
Score = 416 bits (1068), Expect = 1e-134, Method: Compositional matrix adjust.
Identities = 238/562 (42%), Positives = 327/562 (58%), Gaps = 49/562 (9%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
LNTAAFARMR Y+DFYFVP+ +WNK T++TQM N HA + V L +P+
Sbjct 68 LNTAAFARMRGYFDFYFVPFRQMWNKFPTAITQMRTNLLHASGPVLADNVPLSDELPYFT 127
Query 61 LSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYY----AESTSNTF 116
++ Y+ SLA + N FGY RA ++E LGYG+ Y Y A T+
Sbjct 128 AEQVADYIVSLA-------DSKNQFGYYRAWLVCIILEYLGYGDFYPYIVEAAGGEGATW 180
Query 117 AKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNY 176
A RP+ NL S F L AYQKIYAD+ R +QWER +PS FN+DY+ S + + L F
Sbjct 181 ATRPMLNNLKFSPFPLFAYQKIYADFNRYTQWERSNPSTFNIDYI--SGSADSLQLDFTV 238
Query 177 SDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASI--SMSVPVVAGSSA--------A 226
F +++++FD+RY NWQ+DL HG +P QYG+ +++ S S+ VV G +
Sbjct 239 EGFKDSFNLFDMRYSNWQRDLLHGTIPQAQYGEASAVPVSGSMQVVEGPTPPAFTTGQDG 298
Query 227 linsritssnstttlrFPTDPAIPDATPLLTHPS-------------FSILALRQAEFLQ 273
+ + ++ ++ ++ L + + SILALR+AE Q
Sbjct 299 VAFLNGNVTIQGSSGYLQAQTSVGESRILRFNNTNSGLIVEGDSSFGVSILALRRAEAAQ 358
Query 274 KWKEITQSGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAAD 333
KWKE+ + +DY Q+E HW S +S+MC +LG I+ L INEVVN NITG NAAD
Sbjct 359 KWKEVALASEEDYPSQIEAHWGQSVNKAYSDMCQWLGSINIDLSINEVVNNNITGENAAD 418
Query 334 IAGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDR 393
IAGKGT NG INFN G+YG+VMC++H LP +DY T T N DF IPEFD+
Sbjct 419 IAGKGTMSGNGSINFNVGGQYGIVMCVFHVLPQLDYITSAPHFGTTLTNVLDFPIPEFDK 478
Query 394 VGMQTVPLSYVSN------GPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNW 447
+GM+ VP+ N G V P GYAP+Y ++KT +D S+G F+ SLK W
Sbjct 479 IGMEQVPVIRGLNPVKPKDGDFKVSPNLY---FGYAPQYYNWKTTLDKSMGEFRRSLKTW 535
Query 448 VISYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQ 507
+I +D+++L SV+ P++ PN S FKV+P+ L+ LFAV+A+S ++TDQ
Sbjct 536 IIPFDDEALLA--ADSVDFPDN--PNVEADSVKAGFFKVSPSVLDNLFAVKANSDLNTDQ 591
Query 508 FLCSTFFDVKVVRNLDTDGLPY 529
FLCST FDV VVR+LD +GLPY
Sbjct 592 FLCSTLFDVNVVRSLDPNGLPY 613
>gi|547226430|ref|WP_021963493.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
gi|524103382|emb|CCY83994.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=573
Score = 364 bits (935), Expect = 2e-115, Method: Compositional matrix adjust.
Identities = 228/536 (43%), Positives = 318/536 (59%), Gaps = 30/536 (6%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
+N+AA++R+REYYDFYFVPY LLWN A T T M D P HA D ++ V L P+
Sbjct 61 VNSAAYSRLREYYDFYFVPYRLLWNMAPTFFTNMPD-PHHAADL--VSSVNLSQRHPWFT 117
Query 61 LSSISRYLNSLASNSTAVTN-KANYFGYNRALCSAKLMECL--GYGNLYYYAESTSNTFA 117
I YL +L S S A + N+FG++R S KL+ L G+G Y + S++
Sbjct 118 FFDIMEYLGNLNSLSGAYEKYQKNFFGFSRVELSVKLLNYLNYGFGKDYESVKVPSDS-- 175
Query 118 KRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYM-PYSTGSSGMMLSFNY 176
++ +S F LLAYQKI DY+RD QW+ +P +N+DY+ S+G M SF
Sbjct 176 -----DDIVLSPFPLLAYQKICEDYFRDDQWQSAAPYRYNLDYLYGKSSGFHIPMSSFT- 229
Query 177 SDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAAlinsritssn 236
+D ++N +MFDL YCN+QKD F G++P QYGDV S++ P+ +S +S
Sbjct 230 NDAFKNPTMFDLNYCNFQKDYFTGMLPRAQYGDV---SVASPIFGDLDIGDSSSLTFASA 286
Query 237 stttlrFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNV 296
+ T S+LALRQAE LQKW+EI QSG DY+ Q++KH+NV
Sbjct 287 PQQGANTIQSGVLVVNNNSNTTAGLSVLALRQAECLQKWREIAQSGKMDYQTQMQKHFNV 346
Query 297 SPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNG-VINFNSQGRYG 355
SP S C YLGG +S+LDI+EVVN N+TG N ADI GKGTG NG ++F S +G
Sbjct 347 SPSATLSGHCKYLGGWTSNLDISEVVNTNLTGDNQADIQGKGTGTLNGNKVDFES-SEHG 405
Query 356 VVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLPLS 415
++MCIYHCLPL+D++ + ++ + D+AIPEFD VGMQ + S + G L LP S
Sbjct 406 IIMCIYHCLPLLDWSINRIARQNFKTTFTDYAIPEFDSVGMQQLYPSEMIFG-LEDLP-S 463
Query 416 IPNEI--GYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVPN 473
P+ I GY PRY D KT ID G+F +L +WV + ++ Y ++
Sbjct 464 DPSSINMGYVPRYADLKTSIDEIHGSFIDTLVSWVSPLTDSYIS---AYRQACKDAGF-- 518
Query 474 PANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY 529
++ + Y FKVNP+ ++ +F V+ADS+I+TDQ L +++FD+K VRN D +GLPY
Sbjct 519 -SDITMTYNFFKVNPHIVDNIFGVKADSTINTDQLLINSYFDIKAVRNFDYNGLPY 573
>gi|575094321|emb|CDL65708.1| unnamed protein product [uncultured bacterium]
Length=642
Score = 200 bits (508), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 168/597 (28%), Positives = 267/597 (45%), Gaps = 88/597 (15%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHA----LDSSPLNVVKLDGSM 56
L + AF R+RE ++FVPY LW ++ + M N + SS + K+ M
Sbjct 64 LQSNAFTRLRENVQYFFVPYSALWKYFDSQVLNMTKNANGGDISRIASSLVGNQKVTTQM 123
Query 57 PFTDLSSISRYLNSLASNSTAVTNKANYFGYNRALC-----SAKLMECLGYGNLYYYAES 111
P + ++ YL + ST ++ + +NR C SAKL++ LGYGN + E
Sbjct 124 PCVNYKTLHAYLLKFINRSTVGSDGSVGPEFNRG-CYRHAESAKLLQLLGYGN---FPEQ 179
Query 112 TSNTFAKRPLH-----------YNLN--VSLFNLLAYQKIYADYYRDSQWERVSPSCFNV 158
+N H YN + +S+F LLAY KI D+Y QW+ + S NV
Sbjct 180 FANFKVNNDKHNQSGQNFKDVTYNNSPYLSIFRLLAYHKICNDHYLYRQWQPYNASLCNV 239
Query 159 DYMPYSTGSSGMMLSFNYSDF--------YENYSMFDLRYCNWQKDLFHGVVPNQQYGDV 210
DY+ T +S +LS + + E ++ D+R+ N D F GV+P Q+G
Sbjct 240 DYL---TPNSSSLLSIDDALLSIPDDSIKAEKLNLLDMRFSNLPLDYFTGVLPTSQFGSE 296
Query 211 ASISMSVPVVAGSSA-------------------------AlinsritssnstttlrFPT 245
+ +++++ +GS+ A + +++
Sbjct 297 SVVNLNLGNASGSAVLNGTTSKDSGRWRTTTGEWEMEQRVASSANGNLKLDNSNGTFISH 356
Query 246 DPAIPDATPLLTHPS--FSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVSPGDGFS 303
D + T S SI+ALR A QK+KEI + + D++ QVE H+ + P D +
Sbjct 357 DHTFSGNVAINTSLSGNLSIIALRNALAAQKYKEIQLANDVDFQSQVEAHFGIKP-DEKN 415
Query 304 EMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGRYGVVMCIYHC 363
E ++GG SS ++INE +NQN++G N A G + I F ++ YGVV+ IY C
Sbjct 416 ENSLFIGGSSSMININEQINQNLSGDNKATYGAAPQGNGSASIKFTAK-TYGVVIGIYRC 474
Query 364 LPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVS-----NGPLSVLPLS--- 415
P++D+ + ++ + +A+DF IPE D +GMQ V+ N +
Sbjct 475 TPVLDFAHLGIDRTLFKTDASDFVIPEMDSIGMQQTFRCEVAAPAPYNDEFKAFRVGDGS 534
Query 416 ---IPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVP 472
+ GYAPRY ++KT D GAF SLK+WV + ++ N + +P
Sbjct 535 SPDMSETYGYAPRYSEFKTSYDRYNGAFCHSLKSWVTGINFDAIQNNVWNTWAGINAP-- 592
Query 473 NPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY 529
+F P+ + LF V + ++ D DQ RNL GLPY
Sbjct 593 ---------NMFACRPDIVKNLFLVSSTNNSDDDQLYVGMVNMCYATRNLSRYGLPY 640
>gi|517172762|ref|WP_018361580.1| hypothetical protein [Prevotella nanceiensis]
Length=568
Score = 190 bits (482), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 161/559 (29%), Positives = 249/559 (45%), Gaps = 86/559 (15%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
+N+AAF MR Y+FYFVPY LW+ + +T M D SS + K G P +
Sbjct 63 MNSAAFMSMRGVYEFYFVPYKQLWSGFDQFITGMSD-----YKSSFMYAFK--GKTPPSC 115
Query 61 LSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYY-----YAESTSNT 115
+S + L +TA + G+++ ++++ LGYG Y TS T
Sbjct 116 VSFDVQKLVDWCKTNTA----KDIHGFDKNKGVYRILDLLGYGKYANSAGVPYTNPTSTT 171
Query 116 FAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFN 175
K + F LAYQKIY D+YR++ +E FNVD M Y +G +
Sbjct 172 MGK--------CTPFRGLAYQKIYNDFYRNTTYEEYQLESFNVD-MFYGSGKVKETIPNE 222
Query 176 YSDFYENYSMFDLRYCNWQKDLFHGVVP---------NQQY--GDVASISMSVPVVAGSS 224
D Y F LRY N QKDL V P N Q+ G + P V G +
Sbjct 223 PWD----YDWFTLRYRNAQKDLLTNVRPTPLFSIDDFNPQFFTGGSDIVMEKGPNVTGGT 278
Query 225 AAlinsritssnstttlrFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNK 284
+S + + + + S+ +R A L+K +T K
Sbjct 279 HEYRDSVVIVGKNLKENGVDSKRTM-----------ISVADIRNAFALEKLASVTMRAGK 327
Query 285 DYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNIT----------GSNAADI 334
YKEQ+E H+ +S +G CTY+GG S++ + +V + T G
Sbjct 328 TYKEQMEAHFGISVEEGRDGRCTYIGGFDSNIQVGDVTQSSGTTVTGTKDTSFGGYLGRT 387
Query 335 AGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRV 394
GK TG +G I F+++ +G++MCIY +P + Y + V P V ++ DF +PEF+ +
Sbjct 388 TGKATGSGSGHIRFDAK-EHGILMCIYSLVPDVQYDSKRVDPFVQKIERGDFFVPEFENL 446
Query 395 GMQTV---PLSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAF--KTSLKNWVI 449
GMQ + +SY N + + G+ PRY +YKT +D + G F + L W +
Sbjct 447 GMQPLFAKNISYKYNNNTANSRIKNLGAFGWQPRYSEYKTALDINHGQFVHQEPLSYWTV 506
Query 450 SYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFL 509
A G S+ S++N + FK+NP L+ +FAV + + TDQ
Sbjct 507 -------ARARGESM------------SNFNISTFKINPKWLDDVFAVNYNGTELTDQVF 547
Query 510 CSTFFDVKVVRNLDTDGLP 528
+F++ V ++ DG+P
Sbjct 548 GGCYFNIVKVSDMSIDGMP 566
>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=553
Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 254/548 (46%), Gaps = 78/548 (14%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYD-----NPQHALDSSPLNVVKLDGS 55
+NTAAFA MR Y+F+FVPY LW + + +T M D N +SPL V
Sbjct 62 MNTAAFASMRGVYEFFFVPYHQLWAQFDQFITGMNDFHSSANKSIQGGTSPLQV------ 115
Query 56 MPFTDLSSISRYLNSLASNSTAVTNKANY-FGYNRALCSAKLMECLGYGNLY-YYAESTS 113
P+ ++ S+ LN+ + + T+ Y F Y + +L++ LGYG + + +
Sbjct 116 -PYFNVDSVFNSLNTGKESGSGSTDDLQYKFKYG----AFRLLDLLGYGRKFDSFGTAYP 170
Query 114 NTFAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLS 173
+ + + + N S+F +LAY KIY DYYR+S +E FN D G++ +
Sbjct 171 DNVSGLKNNLDYNCSVFRILAYNKIYQDYYRNSNYENFDTDSFNFDKF-----KGGLVDA 225
Query 174 FNYSDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAAlinsrit 233
+D +F LRY N Q D F + +Q + S + + V + A + +
Sbjct 226 KVVAD------LFKLRYRNAQTDYFTNLRQSQLF----SFTTAFEDVDNINIAPRDYVKS 275
Query 234 ssnstttlrFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKH 293
++ T + F D + FS+ +LR A + K +T K +++Q+ H
Sbjct 276 DGSNFTRVNFGVDTDSSEG-------DFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAH 328
Query 294 WNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAAD----------IAGKGTGVSN 343
+ V D YLGG S + +++V +G+ A + +AGKGTG
Sbjct 329 YGVEIPDSRDGRVNYLGGFDSDMQVSDVTQ--TSGTTATEYKPEAGYLGRVAGKGTGSGR 386
Query 344 GVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSY 403
G I F+++ +GV+MCIY +P I Y + P V +++ D+ PEF+ +GMQ + SY
Sbjct 387 GRIVFDAK-EHGVLMCIYSLVPQIQYDCTRLDPMVDKLDRFDYFTPEFENLGMQPLNSSY 445
Query 404 VSNGPLSVLPLSIPNEI-GYAPRYIDYKTDIDTSIGAFKTS--LKNWVISYDNQSLANQF 460
+S S N + GY PRY +YKT +D + G F S L +W +S +F
Sbjct 446 IS----SFCTTDPKNPVLGYQPRYSEYKTALDVNHGQFAQSDALSSWSVS--------RF 493
Query 461 GYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVR 520
P+ + + FK++P LN +F V+ + + D F++ V
Sbjct 494 RRWTTFPQLEIAD----------FKIDPGCLNSIFPVDYNGTEANDCVYGGCNFNIVKVS 543
Query 521 NLDTDGLP 528
++ DG+P
Sbjct 544 DMSVDGMP 551
>gi|496521299|ref|WP_009229582.1| capsid protein [Prevotella sp. oral taxon 317]
gi|288330570|gb|EFC69154.1| putative capsid protein (F protein) [Prevotella sp. oral taxon
317 str. F0108]
Length=541
Score = 182 bits (462), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 158/546 (29%), Positives = 251/546 (46%), Gaps = 87/546 (16%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTD 60
+N+AAF MR Y+F+FVPY LW+ + +T M D + ++ SS LD S+P
Sbjct 63 MNSAAFISMRGVYEFFFVPYSQLWHPYDQFITSMNDY-RSSVVSSAAGDKALD-SVPNVK 120
Query 61 LSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRP 120
L+ + +++ T+K + FGY + S +LM+ LGYG + +++ P
Sbjct 121 LADMYKFVRER-------TDK-DIFGYPHSNNSCRLMDLLGYG------KPITSSKTPVP 166
Query 121 LHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYSDFY 180
L Y NV+LF LLAY KIY+DYYR++ +E V FN+D+ G + +D +
Sbjct 167 LLYTGNVNLFRLLAYNKIYSDYYRNTTYEGVDVYSFNIDH------KKGTFVP--TADEF 218
Query 181 ENYSMFDLRYCNWQKDLFHGVVPNQQY---GDVASISMSVPVVAGSSAAlinsritssns 237
+ Y +L Y N D + + P + D S + + GS+ + N
Sbjct 219 KKY--LNLHYRNAPLDFYTNLRPTPLFTIGSDSFSSVLQLSDPTGSAGFSADGNSAKLNM 276
Query 238 tttlrFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVS 297
A PD ++ A+R A L K I+ K Y EQ+E H+ V+
Sbjct 277 ----------ASPDV--------LNVSAIRSAFALDKLLSISMRAGKTYAEQIEAHFGVT 318
Query 298 PGDGFSEMCTYLGGISSSLDINEVV------NQNITGSNAADIAG-------KGTGVSNG 344
+G YLGG S++ + +V N N++ A +AG KGTG G
Sbjct 319 VSEGRDGQVYYLGGFDSNVQVGDVTQTSGTTNPNVSEVGNAKLAGYLGKITGKGTGSGYG 378
Query 345 VINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYV 404
I F+++ GV+MCIY +P + Y + P V + D+ IPEF+ +GMQ + ++V
Sbjct 379 EIQFDAK-EPGVLMCIYSVVPAMQYDCMRLDPFVAKQTRGDYFIPEFENLGMQPIVPAFV 437
Query 405 SNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTS--LKNWVISYDNQSLANQFGY 462
S L + N G+ PRY +YKT D + G F L W I+ S
Sbjct 438 S------LNRAKDNSYGWQPRYSEYKTAFDINHGQFANGEPLSYWSIARARGS------- 484
Query 463 SVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNL 522
+++N K+NP+ L+ +FAV + + TD F+++ V ++
Sbjct 485 -----------DTLNTFNVAALKINPHWLDSVFAVNYNGTEVTDCMFGYAHFNIEKVSDM 533
Query 523 DTDGLP 528
DG+P
Sbjct 534 TEDGMP 539
>gi|494306153|ref|WP_007173049.1| hypothetical protein [Prevotella bergensis]
gi|270333881|gb|EFA44667.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=519
Score = 182 bits (461), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 157/554 (28%), Positives = 251/554 (45%), Gaps = 91/554 (16%)
Query 1 LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYD-----NPQHALDSSPLNVVKLDGS 55
+NTAAFA MR Y+F+FVPY LW + + +T M D N +SPL V
Sbjct 29 MNTAAFASMRGVYEFFFVPYHQLWAQFDQFITGMNDFHSSANKSIQGGTSPLQV------ 82
Query 56 MPFTDLSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLY-YYAESTSN 114
P+ +L S+ + + S + + F Y + +L++ LGYG + + + +
Sbjct 83 -PYFNLESVFKNIIERDSTPSFQDDLQYRFKYG----AFRLLDLLGYGRKFDSFGTAYPD 137
Query 115 TFAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSF 174
+ + + N S+F +LAY KIY DYYR+S +E FN D G++ +
Sbjct 138 NVSGLKNNLDYNCSVFRVLAYNKIYQDYYRNSNYENFDTDSFNFDKF-----KGGLVDAK 192
Query 175 NYSDFYENYSMFDLRYCNWQKDLFHGVVPNQ------QYGDVASISMSVPVVAGSSAAli 228
+D +F LRY N Q D F + +Q ++ D ++ A S +
Sbjct 193 VVAD------LFKLRYRNAQTDYFTNLRQSQLFTFIPEFSDDEHLNFDRDQYADQSKSNF 246
Query 229 nsritssnstttlrFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKE 288
FP D L + FS+ +LR A + K +T K +++
Sbjct 247 TQLN----------FPVD-----VDNNLGY--FSVSSLRSAFAVDKLLSVTMRAGKTFQD 289
Query 289 QVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAAD----------IAGKG 338
Q+ H+ V D YLGG S L +++V +G+ A + IAGKG
Sbjct 290 QMRAHYGVEIPDSRDGRVNYLGGFDSDLQVSDVTQ--TSGTTATEYKPEAGYLGRIAGKG 347
Query 339 TGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQT 398
TG G I F+++ +GV+MCIY +P I Y + P V +++ DF PEF+ +GMQ
Sbjct 348 TGSGRGRIVFDAK-EHGVLMCIYSLVPQIQYDCTRLDPMVDKLDRFDFFTPEFENLGMQP 406
Query 399 VPLSYVSN--GPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKT--SLKNWVISYDNQ 454
+ SY+S+ P P+ +GY PRY +YKT +D + G F +L +W +S
Sbjct 407 LNSSYISSFCTPDPKNPV-----LGYQPRYSEYKTALDINHGQFAQNDALSSWSVS---- 457
Query 455 SLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFF 514
+F P+ + + FK++P LN +F VE + + TD F
Sbjct 458 ----RFRRWTTFPQLEIAD----------FKIDPGCLNSVFPVEFNGTESTDCVFGGCNF 503
Query 515 DVKVVRNLDTDGLP 528
++ V ++ DG+P
Sbjct 504 NIVKVSDMSVDGMP 517
Lambda K H a alpha
0.317 0.133 0.404 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3784284189360