bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-13_CDS_annotation_glimmer3.pl_2_3

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02723                                                 46.2    0.008


> 483216.BACEGG_02723
Length=368

 Score = 46.2 bits (108),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 107/287 (37%), Gaps = 89/287 (31%)

Query  31   AMSAGGGLFGSISAQKQQKRAH--------AYNLEYMDKQFQQNKEAAAI----------  72
            A+ AG  L G  S    Q +A+        A+N +  DKQ   NKE              
Sbjct  13   AIGAGTSLIGGASTTHMQNQANKEIAQMNNAFNEKMFDKQIAYNKEMYQTQLGDQWKFYD  72

Query  73   ------------NQAYAKELWD----YTSFENQRKHMEAANLNPALMYGMGGA-------  109
                        N+AY  E+W+    Y     QR  +EAA LNP +M   G A       
Sbjct  73   DQKANAWKLYEDNKAYQTEMWNKQNEYNDPSAQRARLEAAGLNPYMMMNGGSAGVAGSVS  132

Query  110  -TGGSASGAGTVGGGGSLPGT-NPVSA-------------------------GAQAGGMS  142
             T GSA  AG+    G  P T  P SA                          AQA  + 
Sbjct  133  GTQGSAPSAGSPSAQGVQPPTATPYSADYSGVMQGLGHAIDTIMTGSQRNIQNAQADNLR  192

Query  143  IQGAMMFS----EIAKNFAQASKDE---ADAKKKEGVETDEARARINLINKQTEVEEEVK  195
            I+G  + S    E+ K + +A  D+   A  +    ++ D + +++ + N      E V+
Sbjct  193  IEGKYIASKAIAELYKTYNEAKNDDERVAIQRVLSSIQKDLSASQVAVNN------ENVR  246

Query  196  QLTAANYFKV----LKEQDEVW----QRARLLSTQADIAEKTKQAEI  234
            Q+ A     V    L+EQ   +    QR +L    ADIA K  Q  +
Sbjct  247  QIQAQTKIAVTENLLREQQLKFLPYEQRTQLALGAADIALKYAQKNL  293



Lambda      K        H        a         alpha
   0.311    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687453643680