bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-1_CDS_annotation_glimmer3.pl_2_4

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  575615.HMPREF0670_00477                                             51.6    4e-04


> 575615.HMPREF0670_00477
Length=541

 Score = 51.6 bits (122),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 119/567 (21%), Positives = 216/567 (38%), Gaps = 123/567 (22%)

Query  5    SRKRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSV  64
            SR    +S F L   +  +A  G L+P     ++  D    Q    ++ +P+ +    S+
Sbjct  12   SRANRPRSAFDLSQKHLYTAPAGALLPVLSVDLMFHDHIRIQAQDFMRTMPMNSAAFISM  71

Query  65   CVKKEYFFIP-DRIYNIDRQLNFQGVTDTPNTVYKPSMAPPIPFDISKSMGDKVDISVSD  123
                E+FF+P  ++++   Q     + D  ++V            +S + GDK   SV +
Sbjct  72   RGVYEFFFVPYSQLWHPYDQF-ITSMNDYRSSV------------VSSAAGDKALDSVPN  118

Query  124  VQ-----------TDLPLASLGLIVGPGSLADYMG--------EAPGSIV-TGVIDLTPY  163
            V+           TD  +           L D +G        + P  ++ TG ++L   
Sbjct  119  VKLADMYKFVRERTDKDIFGYPHSNNSCRLMDLLGYGKPITSSKTPVPLLYTGNVNLFRL  178

Query  164  IGYIDTYYNYYLNQQY------SLAPTSLAGTASDSAMEYPYYLEVSELENYLRTIKTTP  217
            + Y   Y +YY N  Y      S       GT   +A E+  YL +              
Sbjct  179  LAYNKIYSDYYRNTTYEGVDVYSFNIDHKKGTFVPTADEFKKYLNLH-------------  225

Query  218  NTSPAVRRDKTASYSTNVD-TALNAINSEAFMWNFFTGRQSLFQRSFP--SYYLEAWLKT  274
                   R+    + TN+  T L  I S++F         S+ Q S P  S    A   +
Sbjct  226  ------YRNAPLDFYTNLRPTPLFTIGSDSF--------SSVLQLSDPTGSAGFSADGNS  271

Query  275  SSFTDAAVDVSVSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDNTC  334
            +    A+ DV      +++  I  A  + + + ++   G   ++  E+ F V +S+    
Sbjct  272  AKLNMASPDV------LNVSAIRSAFALDKLLSISMRAGKTYAEQIEAHFGVTVSEGRDG  325

Query  335  PAF-LGSDSFDMNVNTLYQTTGF------EDNSSPLGAFSGQLSG---GTRFRRRNYHFN  384
              + LG    ++ V  + QT+G       E  ++ L  + G+++G   G+ +    +   
Sbjct  326  QVYYLGGFDSNVQVGDVTQTSGTTNPNVSEVGNAKLAGYLGKITGKGTGSGYGEIQFDAK  385

Query  385  DDGYFMEITSIVPRVYYPSY-INPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLG  443
            + G  M I S+VP + Y    ++P   + + G  + P  +N+ MQ +             
Sbjct  386  EPGVLMCIYSVVPAMQYDCMRLDPFVAKQTRGDYFIPEFENLGMQPI-------------  432

Query  444  ANTVTYANSTLSIPGF---KLQESNYVGYEPAWSELMTAVSKPHGRLCND--LDYWVLSR  498
                        +P F      + N  G++P +SE  TA    HG+  N   L YW ++R
Sbjct  433  ------------VPAFVSLNRAKDNSYGWQPRYSEYKTAFDINHGQFANGEPLSYWSIAR  480

Query  499  DYGR------NLASVMDTPAYSDFIKA  519
              G       N+A++   P + D + A
Sbjct  481  ARGSDTLNTFNVAALKINPHWLDSVFA  507



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1318217866240