bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-25_CDS_annotation_glimmer3.pl_2_1 Length=204 Score E Sequences producing significant alignments: (Bits) Value 40559.EDN23732 36.2 4.2 > 40559.EDN23732 Length=506 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 26/114 (23%), Positives = 48/114 (42%), Gaps = 6/114 (5%) Query 88 QAKEVTVFRERFNKIVVDVTSTGFCAKITKVI-LRSLCVICNLRHGDRNSISTEVFRA-L 145 + +++T+F E FNKI F ++ I +RS+ +C L GD + F+ L Sbjct 85 EGRQMTLFMEHFNKIGKAFEENFFGTRVINTIEVRSIQQVCALSSGDYGKPAQNFFKEFL 144 Query 146 QPSIRRTNAKQAKQQLSIPRTIASHRLEKTLIRERQAQFVHSERCINVITRTSS 199 + ++K K R I H + + + H +R +++I S Sbjct 145 GDGVLSLDSKAWKHS----RDIVKHIFSRAEVSDMDTLSFHVDRFLDLIPSDGS 194 Lambda K H a alpha 0.322 0.132 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 222524777800