bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-35_CDS_annotation_glimmer3.pl_2_6 Length=118 Score E Sequences producing significant alignments: (Bits) Value 401473.BDP_0879 35.8 1.2 > 401473.BDP_0879 Length=508 Score = 35.8 bits (81), Expect = 1.2, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (52%), Gaps = 2/64 (3%) Query 1 VQNKFLTYKNDNIMKYSFPTKNN--DRLKSVEIYEGESIETKCARILQNKEPITDTAPII 58 V + F+ D I++Y+ P + RL SV +GE + R+L +P+ +T P++ Sbjct 187 VSDGFIVLTVDGIVRYASPNAISCFRRLGSVSTMQGEYLSEIGTRLLHENDPVLETLPLV 246 Query 59 YTAK 62 + K Sbjct 247 LSGK 250 Lambda K H a alpha 0.310 0.130 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126989848920