bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-6_CDS_annotation_glimmer3.pl_2_2

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  483216.BACEGG_02723                                                 92.4    3e-18


> 483216.BACEGG_02723
Length=368

 Score = 92.4 bits (228),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 99/342 (29%), Positives = 153/342 (45%), Gaps = 63/342 (18%)

Query  7    ASGLFGGLGSVISGAI----GAKTTADTNKTNLKIAQMNNDFNAR---------------  47
            A+ + G +GS I        GA TT   N+ N +IAQMNN FN +               
Sbjct  3    AAAMTGIVGSAIGAGTSLIGGASTTHMQNQANKEIAQMNNAFNEKMFDKQIAYNKEMYQT  62

Query  48   ---------EAQKA---------RDFQLDMWNKENEYNSASSQRERLENAGYNPY--MNE  87
                     + QKA         + +Q +MWNK+NEYN  S+QR RLE AG NPY  MN 
Sbjct  63   QLGDQWKFYDDQKANAWKLYEDNKAYQTEMWNKQNEYNDPSAQRARLEAAGLNPYMMMNG  122

Query  88   AQAGTATGMSGTSAASAAGAAPQ---------IPYTPDFQSVGVNLASALKMMSEKKKTD  138
              AG A  +SGT  ++ +  +P           PY+ D+  V   L  A+  +    + +
Sbjct  123  GSAGVAGSVSGTQGSAPSAGSPSAQGVQPPTATPYSADYSGVMQGLGHAIDTIMTGSQRN  182

Query  139  IENLNMSDLLRSQIWQNLGATDWRNASPEA-RAYNLSQG---RRAAELGMASLEENLS-N  193
            I+N   +D LR +     G      A  E  + YN ++    R A +  ++S++++LS +
Sbjct  183  IQNAQ-ADNLRIE-----GKYIASKAIAELYKTYNEAKNDDERVAIQRVLSSIQKDLSAS  236

Query  194  QRWSNNLLVANIANSLLDADTKTILN----KYLDQQQQAELNVKAANYEYLVMSGQLKRQ  249
            Q   NN  V  I      A T+ +L     K+L  +Q+ +L + AA+         L  +
Sbjct  237  QVAVNNENVRQIQAQTKIAVTENLLREQQLKFLPYEQRTQLALGAADIALKYAQKNLTEK  296

Query  250  EVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNF  291
            +  + I +  ET  RANG  +QN+   ET    ++    + F
Sbjct  297  QARHEIEKLAETIVRANGQAMQNQYDAETYRDRVKLVKESLF  338



Lambda      K        H        a         alpha
   0.311    0.125    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714589971720