FEATURES             Location/Qualifiers
     gene            89..364
                     /locus_tag="Alpa_01"
     CDS             89..364
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MAQEETEQLLRSQKFELTRQQARAAAMSFVQERILTYRQAEELVRYLTNIHDPKNMWDGIWRIVSLPAGVSKSDFAADLYDALCEEIGSVE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
     gene            956..1615
                     /locus_tag="Alpa_02"
     CDS             956..1615
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="LHRCKNSLHLSRRALKLPIKLLIKSLFMEKTPFYRTKAFWTLIASIIAALAAYFTVSCSYSRKIFRNGVHHDTVRIESKIKSRDLSCLTTNLGTPSHSLSSSNLELISWKHSSSLAPTMPSTVTTSLSGLPWQIVFGSKPQLIPLSQLRCHFILPSNKDCLTLSVTVLSMSSTSQTSFSSFTLASLVLAVPLGRSRRGGRRKGKPRPKVKNIIIGGRHL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1648..2571
                     /locus_tag="Alpa_03"
     CDS             1648..2571
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MCNKPLRITNPHYIKLADQLGVEVPQFSNQSDYKLQVPCGKCVQCIRKRQQHWFVRAHNIYKRLGYNLSNSYFCTFTLKPEFYEAFCKEPYAFIRRFIDRMRKDQFLRYRNPDTGRFCYRKISFPYLFVLEVADGKRAAQRRLHSEHRLHLHAIMFGCPLPWWRVRHYWMSFGLAWVSPLRHFGGVRYAMKYITKKSAVHWNDVPKEILDLHGRLYVSHGFGRLSESEKDALRAYMMTGCKQWFSVLIDNHPYSIPRYYKLACFDKEQVRCRNDSLIPQLIWEYVLRTYPTYSNYKKQLIKQSILWQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2568..4343
                     /locus_tag="Alpa_04"
     CDS             2568..4343
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MMFLSRKRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSVCVKKEYFFIPDRIYNIDRQLNFQGVTDTPNTVYKPSMAPPIPFDISKSMGDKVDISVSDVQTDLPLASLGLIVGPGSLADYMGEAPGSIVTGVIDLTPYIGYIDTYYNYYLNQQYSLAPTSLAGTASDSAMEYPYYLEVSELENYLRTIKTTPNTSPAVRRDKTASYSTNVDTALNAINSEAFMWNFFTGRQSLFQRSFPSYYLEAWLKTSSFTDAAVDVSVSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDNTCPAFLGSDSFDMNVNTLYQTTGFEDNSSPLGAFSGQLSGGTRFRRRNYHFNDDGYFMEITSIVPRVYYPSYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSIPGFKLQESNYVGYEPAWSELMTAVSKPHGRLCNDLDYWVLSRDYGRNLASVMDTPAYSDFIKAAGTYVDELSLQRLTAFLKRIYVSPSSCPYILCGDFNYVFYDQRPTAENFVLDNVADIVVFREKSKVNVATTL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 39 and 40 "
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_026318620.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4356..4757
                     /locus_tag="Alpa_05"
     CDS             4356..4757
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKTKQDYNPHVGCLYSNLSQRVGIRSCADQHASYHVRNCVSQPDEFIVGARSMNEILEEYYTFGFLSCDTQAVRGDSAYDEIQPSGKDASFLSTDPSSDFSLDKFERIERIAECVGETSAERHKEELGKQNDK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_026318619.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4760..5863
                     /locus_tag="Alpa_06"
     CDS             4760..5863
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MSALVTSAIIAGASGLAAAGGSSIAASKMNSRAEKYNRWALKEQQRYQKEYADYMAQLEAQQNNLYWDKYNSPAAQRRARVAAGFTPYADVGGIQTSSVDPGSYGGSTPSAQSFTQPGGIPSSPLVGAFGNATQQTLSALQAEANIELTKSQALKTRAETTGLENTNSMFDVVKSIADEELTSKRFSNILKEVEVKYAEVNAITDLDAKQAKIAEINASALERLASAAKTDADRITVELLRDAQKRSLEAGASLAEAQAATEPHRALNLKQDTLLKMAQEETEQLLRSQKFELTRQQARAAAISFVQERILTYRQAEELARYLANIHDPKNMWDGIWRIVSLPAGISKSDFAADLYNALYEEINSIN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 19 and 20 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:INSD:WP_018697176.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 19 and 20"
     gene            6375..7088
                     /locus_tag="Alpa_07"
     CDS             6375..7088
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="LTFWSKKNNFLAFEKWNALHRCKNSLYSPRRALKLFIKLFIKSLFMEKTPFYRNKAFWTLVTSIIAAFAAYFTVSCSYTQKVFRHGVHHDTVKVESVIKSRNLSCLTKNLGTPSHSLSSSNLELISWKHSSSLAPTMPSTVTTSLFGLPWQIVFGSKPQLILLSRLRCHFISPSNKDCSTPSVTVLSMSSTSQTSFSSFTLASLVLAVPLGRSRRGGRRKGKPSPKVKNIIIGGRHL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="2 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ccgtaggcgt ggtgcttcgc ttgccgagcc cacggcggcg actgagccgc atagagccct 
       61 caatctcaag caggacaccc tgcttaagat ggctcaggag gagaccgaac agcttcttcg 
      121 ttctcagaaa tttgaactta cacgtcagca ggcccgcgct gcggccatgt cgttcgttca 
      181 ggagcgtatc ctgacctacc gtcaggctga ggagcttgtt cgttacctca ctaacattca 
      241 tgatcccaaa aacatgtggg acggtatttg gcgtatcgtt tcgctccccg ccggagtttc 
      301 gaagagtgat tttgcagcag acctctacga tgctctttgc gaggagattg gttcagttga 
      361 gtagaatcgt taggcttgtt ttggcccgga tacttgtatc cgggcctttt tctctgcgtt 
      421 cgagagcgtt cacctggttc gatttggctt gtaacgctcc gtactcctct tgcagtctta 
      481 ccccgcaccg caggtagcga ctagcacctc tataaggtgc catggtcgcg gacggagtcc 
      541 gctggcacgt aagcgatggt ttaccatcgc gcccgtaaat acccattttt gagagaaggc 
      601 tctctctctt gcctatatat gccagatgtg gaaacagcgc cctcgcgagg ttccgcatcg 
      661 gttctctcaa agtcataaaa atctatgagc gtagcgaatt ccattaggtg actgagaggg 
      721 ggtacggggg agagagttag gagccccgtg catgagattg tctgcatctg ttaacgcgcg 
      781 cgcgcgcttc gcgtgcgtgc gatgacagag ctaagtagct caggcacagt tttgcgtcct 
      841 tactttctcc cccgttgtac acttctcagg cctttttaat tcgtcgattt ctccgagtaa 
      901 ttgacctttt ggtcgaaaaa aaaacaattt tcttgcattt gaaaaatgga acgctttgca 
      961 tcgatgcaaa aattccttac atttgtctcg tagggcactt aaattaccca ttaaattact 
     1021 cattaaatca ctttttatgg aaaaaacacc attttaccgt actaaggctt tttggacgct 
     1081 tatagcgtct ataatcgccg ctcttgctgc ctacttcacc gtatcgtgta gttattctcg 
     1141 gaaaatattc cgtaacggtg ttcatcatga taccgtgcgg atcgaatcta aaatcaaatc 
     1201 tcgtgaccta tcatgcttaa caacgaatct tgggacaccc tctcacagtc tttcgagttc 
     1261 gaacctcgag ctcatttcgt ggaaacactc ttcgtcgctt gctccgacta tgccgtcgac 
     1321 ggtaactaca tctctttccg gtttgccttg gcagatcgtg ttcggatcca aaccgcagtt 
     1381 gattccattg tcgcagctca ggtgccattt tattttacca tcgaacaagg attgtttgac 
     1441 tctgagtgta accgtattat ctatgagttc aacatctcag acctcttttt cttcatttac 
     1501 gctcgcttct ctggttctgg cagtgcctct cggtcgctct cgtcgcggcg gccgaagaaa 
     1561 aggaaaaccc cgtccaaagg tcaaaaacat aataatcggc ggacgacacc tgtagttgta 
     1621 gatcttgatt tttagtttgt ttgagttatg tgtaacaagc ctttgcggat tacgaatcca 
     1681 cattacatta aacttgccga tcagcttggc gtagaggttc ctcagttctc taaccagtcg 
     1741 gattataagc ttcaggtgcc ctgtggcaag tgtgttcagt gtattaggaa acgtcaacag 
     1801 cactggtttg ttcgcgctca taacatctat aagcgtctcg gttacaatct ttcaaactct 
     1861 tatttttgca cctttactct caaaccagaa ttttatgagg ccttttgcaa ggagccctac 
     1921 gcctttattc gtcggtttat agaccgcatg cgtaaggatc agttcctccg ttatcgaaat 
     1981 cccgatacgg gtcgcttttg ttatcgcaag atttcttttc cttatctttt tgtgctggag 
     2041 gttgccgacg gtaagcgcgc agctcaacgt aggcttcatt ctgagcatcg acttcatctc 
     2101 catgcgatta tgtttggatg ccctctgcct tggtggcgtg ttcgtcatta ctggatgtcc 
     2161 ttcggtcttg cttgggttag tcctctccgt catttcggtg gcgttcgcta tgcaatgaag 
     2221 tatatcacaa agaagtctgc tgtgcattgg aatgacgttc cgaaggaaat tttagattta 
     2281 catggtcgtt tgtatgtctc tcatgggttt ggccgattgt cagaatcgga gaaggacgcc 
     2341 cttcgagcat atatgatgac tggttgtaaa cagtggttct ctgtcttgat tgacaatcat 
     2401 ccttacagca ttcctcgtta ttataagctg gcatgttttg ataaggagca ggttcgctgt 
     2461 cgcaacgatt ctttaattcc gcagcttatt tgggagtatg ttttgaggac ttatccgact 
     2521 tattctaatt ataaaaaaca acttataaaa caatctattt tatggcaatg atgtttcttt 
     2581 cgcgtaagcg aaacaagaaa tcccggttta aacttttttc cggtaacccc acttctgcaa 
     2641 gctggggtac tctgattccc accaatgtga cccgtgttgt tgctggtgat gattttagct 
     2701 tccagcctgg cgtaggtgtg caggctcttc cgatcgtggc ccctttcatg gggagtgtat 
     2761 gtgtcaagaa ggaatatttt tttattcccg atcggatcta taatattgat cgtcagctta 
     2821 attttcaggg tgtcactgat actccgaata ctgtttacaa gccttcgatg gcgcctccga 
     2881 ttcctttcga tatcagcaag tcgatgggtg ataaggtaga catttcggtt tctgatgtgc 
     2941 agacagatct gccccttgct tctctcggtc ttatcgtcgg ccccggttct cttgccgatt 
     3001 acatgggtga agctccggga tctatcgtca cgggtgttat cgatcttacg ccgtatatcg 
     3061 gttacatcga cacttattac aactactatc ttaaccagca atacagcttg gctcctacgt 
     3121 ccttggctgg tactgcatcc gattctgcga tggaatatcc ctattacttg gaggttagcg 
     3181 aattggaaaa ctatctgcgt accatcaaaa ccacaccgaa tacttctccg gctgttcgta 
     3241 gggataaaac tgcctcgtat tctacgaatg tcgacactgc cttaaacgct attaatagtg 
     3301 aagcgttcat gtggaacttc ttcactggtc ggcagtctct ttttcagcgt agttttccgt 
     3361 cctactacct cgaggcttgg ttaaaaactt cttctttcac cgatgctgct gttgatgttt 
     3421 cggtttcggg caattctgtg tcgatgcgta atatcacttt cgcatctcgc atgcagcgtt 
     3481 acatggatct cgccttcgcc ggcggtggtc gtaactcgga tttctatgag tcccagttcg 
     3541 atgtcaagct cagccaggac aacacttgcc cggccttcct tggtagtgat tccttcgaca 
     3601 tgaatgttaa tacgctctac cagacgacgg gcttcgagga caattcctcg ccgcttggtg 
     3661 ctttctctgg ccagctttct ggcggcactc gttttcgtcg tcgtaactat cattttaacg 
     3721 atgacggtta ttttatggag atcacatcca tcgttccgcg ggtttactat ccgtcttaca 
     3781 ttaaccctac ctcgaggcaa atttctttgg gccagcagta tgctcctgcg ctcgataata 
     3841 ttgcgatgca gggcttgaag gcttccacgg tctttggtga ggttcagaat cttggtgcta 
     3901 atactgtgac ctatgctaat tctactcttt ctattcccgg gttcaagtta caagaatcca 
     3961 attacgtcgg ctacgaaccc gcctggagtg aactcatgac ggctgtctcg aagcctcatg 
     4021 gtcgcctctg taatgacctt gattactggg ttctttctcg tgattatggt cgcaatctcg 
     4081 cctccgtcat ggatactccg gcttatagcg atttcattaa ggccgctgga acctatgtcg 
     4141 acgaactttc tctccagcgc cttacggctt tcctcaagcg gatctatgtt tcgccctctt 
     4201 cgtgtcctta tattctgtgt ggtgatttca attacgtctt ctacgatcag cggcccactg 
     4261 ccgagaattt cgttctcgat aatgttgctg atattgtggt gttccgtgag aagtcgaagg 
     4321 tcaatgttgc aacaactctc taaacatttt tcgtcatgaa aacaaaacaa gattataatc 
     4381 cgcatgtagg ttgtctttat tccaaccttt cgcagcgcgt tggtattcgt tcttgtgctg 
     4441 atcagcatgc ttcctatcat gttcgcaact gtgtttctca gcccgatgag tttattgtcg 
     4501 gtgccaggag tatgaacgag attctcgagg agtattacac cttcggcttt ctttcttgtg 
     4561 atacgcaggc tgttcgtggt gattctgctt acgatgagat tcagccttct ggtaaggatg 
     4621 cttcgttcct ttcgacggat cctagctcgg atttctcgct tgataagttc gagcgcatcg 
     4681 agcgtattgc cgagtgcgtc ggcgagactt ctgctgagcg tcacaaggag gagttgggta 
     4741 aacaaaatga caagtagtta tgtctgccct tgttacttct gcgattattg ccggtgctag 
     4801 tggccttgcg gctgctggtg gttcgagtat tgctgcttct aagatgaatt ctcgtgccga 
     4861 gaaatacaat cggtgggctc ttaaagaaca gcagcgttat cagaaggagt atgcggacta 
     4921 tatggctcag ctggaagctc agcagaataa tttgtactgg gataaataca attccccggc 
     4981 cgctcagcgt cgagcgcgtg ttgcggccgg gttcactccc tacgctgatg tcggaggtat 
     5041 tcagacgtct tctgttgatc ctggctccta tggtggttcg acgccttctg cgcagtcttt 
     5101 cacacagccg ggtggtattc cgtccagccc cctcgtgggt gcttttggta atgccactca 
     5161 gcagaccctc tcagctcttc aggccgaggc taatattgaa cttaccaagt cgcaagccct 
     5221 taaaactcgg gctgagacta ccggtttgga gaatacgaac tctatgtttg acgttgtaaa 
     5281 atctattgcg gatgaggaac ttacgtccaa gcgcttcagt aatattctta aagaagttga 
     5341 agtcaagtat gccgaggtca atgccattac ggatcttgat gccaagcagg ctaagattgc 
     5401 tgagatcaat gcgtcggctt tggagcgact tgccagcgct gctaaaactg atgctgatcg 
     5461 gatcactgta gagcttcttc gcgatgctca aaaacgctcc cttgaggctg gtgcttcgct 
     5521 tgctgaagcc caggcggcga ctgagccgca tagagctctc aatctcaagc aggacacttt 
     5581 gcttaaaatg gctcaggagg agaccgaaca gcttcttcgt tctcagaaat ttgaacttac 
     5641 gcgtcagcaa gcccgtgctg cggccatttc gttcgttcag gaacgtattc tgacctaccg 
     5701 tcaggctgag gagcttgctc gttacctcgc taacattcat gatcccaaaa acatgtggga 
     5761 cggtatttgg cgtattgttt cgctccccgc tggaatttcg aagagtgatt ttgcagcaga 
     5821 cctctataat gctctttacg aggagattaa ttcaatcaat tagaattctt gagtttattt 
     5881 gagcccggcc gtcgctgccg ggctcctact tgcttcctga ggcttgtaac cttctgtgtt 
     5941 cctcttgcag tcttaccccg caccgcaggt agcgactagc acctctataa ggtgccatgg 
     6001 tcgcggacgg agtccgctgg cacgtaagcg atggtttacc atcgcgcccg taaataccca 
     6061 ttttgagaga aggcactttc tcttgcctat atatgccaga tgtggaaaca gcgccctcgc 
     6121 gaggttccgc atcggttctc tcaaagtcat aaaaatctat gagcgaagcg aattccatta 
     6181 ggtgactgag agggggtacg ggggagagag ttaggagccc cgtgcatgag ctggtctgca 
     6241 tccgttaacg cgcgcgcgcg cttcgcgtgc gtgcgatgac ggagctaagt agctcaggca 
     6301 cagttttgcg tccttacttt ctcccccgtt atgcacttct caggtctttt taattcgtcg 
     6361 atttctccga gtaattgacc ttttggtcga aaaaaaacaa ttttcttgca tttgaaaaat 
     6421 ggaacgcttt gcatcgatgc aaaaattcat tatattcgcc ccgtagggca cttaaattat 
     6481 tcattaaatt gttcattaaa tcacttttta tggaaaaaac accattttac cgcaacaagg 
     6541 ctttttggac gcttgtaacg tctataattg ccgcttttgc tgcctacttt actgtatcgt 
     6601 gcagttacac tcagaaagtt tttcgtcatg gtgttcatca tgacaccgtg aaagtagaat 
     6661 ctgtaattaa atctcgtaat ctgtcatgct taacaaagaa tcttgggaca ccctctcaca 
     6721 gtctttcgag ttcgaacctc gagctcattt cgtggaaaca ctcttcgtcg cttgctccga 
     6781 ctatgccatc gacggtaact acatctcttt tcggtttgcc ttggcagatc gtgttcggat 
     6841 ccaaaccgca gttgattcta ttgtcgcggc tcaggtgcca ttttatttca ccatcgaaca 
     6901 aggattgttc gactccgagt gtaaccgtgt tatctatgag ttcaacatct cagacctctt 
     6961 tttcttcatt tacgctcgct tctctggttc ttgcagtgcc tctcggtcgc tctcgtcgcg 
     7021 gcggccgaag aaaaggaaaa cccagtccaa aggtcaaaaa cataataatc ggcggacgac 
     7081 acctgtagtt gtagatcttg atttttagct tgtttg 
//
