FEATURES             Location/Qualifiers
     gene            complement(198..872)
                     /locus_tag="Alpa_01"
     CDS             complement(198..872)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MLTESILIYKIITVIFLVRTANYLLNVCVSIYLNLLENMKKYISTLYQNTDPYTSVRISISYYSRTRTGSPRILAELLIRAGNLVVVIGLPREATLNRTLRAMLIHLVAFPITLNRMIELNRILVSRTDLQHHAFLTPRKPLEIVFPDRSKRPRSLHSLMESLASLMENFSQSALPGRLSIPAFSDMRAMVDCLAMNYIGLYEAYLRRYPDLFKQSEETIPMQP"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="3 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1433..1684)
                     /locus_tag="Alpa_02"
     CDS             complement(1433..1684)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="METKDFELMDEKLLAIVDFGKEKKFYIVNSSDLQCFLQHHSSKFLSTPPPVIFQSVLVYDPIVFQSQLDSFRKSISKSNSLNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2089..3321)
                     /locus_tag="Alpa_03"
     CDS             complement(2089..3321)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MDPTVLGAIISAGAGLGSSVASGIASGKMNKKSIKYNKWALQEQQRFQSEQAQLGRDWSEEMMSKANQWNLEQWNRENEYNLPVNRKARLLAAQINPALAMQGGSSVGQAASSPSSASAPSPASPSGASALPLNLQRPDYGTGFAQLSSAVNSYFENKQRDVITEGYGLDNALKATYGDRAYRLSLGKTEAEIDNIRASTAKSYADSALVNLQAKEKEILNKYLDAGQQLSLFLKIGELATMKTQRELLSAQTRKAIAEEIEVSARARGLKISNYIAEQTAERLIIATNEENRYRGIHARSSAAWTPVRDFYKTSQMSADLKASEVANIMAEFERYTKDTPGNRWIQKNIVPVSSALGPLLDAAAMFTVAGKLGKSVNIFKPKYGKTSKYSWKEYKYGENPKTPKYSWKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 21 and 22 "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3324..3752)
                     /locus_tag="Alpa_04"
     CDS             complement(3324..3752)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MEKRDIINVLSNSEFTTVRPIDELRFVEELDGSIRFVSDATLLLNEQRIINDIGEDNYRNFIRQLQVNPSSPYKDAKFTDEQLMTEIKSRYVQSPSEVREWVRDMLDKQEQISDEVKAKLEEMKASESESSESIETVESKSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3770..5560)
                     /locus_tag="Alpa_05"
     CDS             complement(3770..5560)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MGSRLFSYGDVKGRPSRAGFDLSKKFCFTAKAGELLPVYWKMLLPGTKVNLKDMHFTRTMPVNTAAYTRIKEYFDWYFVPLRLINKNLNPALVNMLDQSNIANSLIQNKVVSDEIPCFDYDTLTSCLKAFNTQHPSYLDIAGFERVPKTLKLLRYLRYGNFLYDTGFSTLPSKNMNYSSVKDFNLYAKWNLNVNVLPLAAYQKIYCDYFRFEQWEKAQPYTYNFDYYSGGNILTEYKGDPSDLFLKDNLFSLRYANYPKDLFMGILPSSQLGSVATINISHSSSAGVHLTNQEGYLTGTVASDGTTITVKNTRSLTPGISPVLRTNFADLNANFDILSFRIANAIQRMREIQQCAGQGYKEQLEARWNVKLSTALSDHCTYIGGNSSQINISEVLNNSLDTEQSQADIKGKGVGSGSGSESFETQEHGILMCIYHAVPVLDYQLTGPDLQLLNTYATDLPQPELDNLGLEALPYFTFVNDAVATQPNNVTVKSIIGYVPRYIAYKTDIDCVDGAFLTSLTSWVTPLTIDEIVTKISLGSGTGPFTPNYGLFKVSPYVLDSIFVSQCDSTVDTDQFLVESFFDVKLVQNLDYNGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5594..5812)
                     /locus_tag="Alpa_06"
     CDS             complement(5594..5812)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="LDDLANPDFIGDSMVLMMRDRFRVSSVSQCDEYCRRLEKYLNSLSIYRYKVTQYPRDKSHEFISEQVLLPFD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5832..6086)
                     /locus_tag="Alpa_07"
     CDS             complement(5832..6086)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MLRSQYTDLVGLVDLDEELVDFLIAPVTEDTPSSNGVSALEHHPPFESLVKSHPILSLAQAKAKTDCDNRVKHREINERNLKYV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ccaacacaac gaaaaaagac gatataaccg catacaatca ctatcgaata aatcatccga 
       61 gcgaacatcg gtcgttgggg attcgagtcg agcataataa taacaagtat aaagttgatt 
      121 ctcaatactt aaaaaatctt ccacagaacg agaagacata gaatagatag atcgaagatg 
      181 aagcctacaa acatccatca aggttgcatc gggattgtct cttcggactg tttgaaaaga 
      241 tctggataac gtcgtagata cgcttcgtac aagccaatat aattcatggc tagacaatcg 
      301 accattgcac gcatatcgga gaaagcagga atcgacaacc gacctgggag ggcggattgc 
      361 gagaagtttt ccattaatga ggctagggac tccattaagg aatggagaga gcggggtctc 
      421 ttcgatcggt cgggaaatac tatctctaac ggcttccttg gcgtcaaaaa agcatgatgt 
      481 tgcaaatccg ttcgagaaac gagaatacgg tttaactcta tcatcctgtt taaggtgata 
      541 gggaaggcga ctaaatgaat taacatagcc cgcaacgtac gattcagcgt cgcctctcga 
      601 ggcagaccaa tcacaacgac caaatttcca gctcgaatta acaattcggc caatattctt 
      661 ggcgaccctg tccgagtccg tgaataataa gatatggaaa tgcggacgga agtgtacggg 
      721 tccgtattct gatacaaggt agatatgtac tttttcatat tttccagcaa atttaaatat 
      781 atgcttacgc aaacgtttaa caaataattg gccgtcctta cgagaaatat aaccgtaata 
      841 atcttgtaaa tgaggatact ttccgttaac attcaaagtg gcctgctcac gaaaatcacg 
      901 gatatattct tcagaagcat taaaataata agaaaaatca tcagtataag aaagaggagc 
      961 atctacttcc tttttaatga cctttttata tttcttagaa tacacctttt gaaccatctt 
     1021 ataatctcct cgacgtctag gtttgacaac aagctcgtaa agagttgaat caggatcatc 
     1081 aggatgaacc ttaaaaattt gacacttcgg cacatatttt tgatcataag aaggattaat 
     1141 gaaataagtg tactttgata aggacttttg taaacttact cgcatagagc gaatagacgc 
     1201 cttgcgagta agacaagcgg gacattcgcc gcatggttgg tacataactt gccctgtata 
     1261 agggtttata acgtttttac catggtaaca gcgtttagcc aaatatttta tggtaccaac 
     1321 cttatccata ctactgccct gctagaattg ttcctaacga agttaacaaa gaaacgatcg 
     1381 cagaaatgat tgcggaccaa attttgttct ttttgtcagt tgtagccata aatcaattat 
     1441 ttaaagaatt agacttagaa atagatttcc gaaaagaatc taattgagat tgaaaaacaa 
     1501 taggatcata aactaaaaca gattgaaaaa taaccggagg aggagtagac aaaaatttac 
     1561 tagaatgatg ttgcaaaaaa cattgaagat cagaagaatt aacaatataa aatttcttct 
     1621 ccttaccaaa atcaacgata gcaagtaatt tttcatccat taactcaaaa tcttttgttt 
     1681 ccatagtacc aacttttaaa attaatattt cattgcaagt atagtaaaaa aaaagatatg 
     1741 ttacaacggt gtcacttgtg ggtaattatg acaagagaaa acctttgcag ggtgataacc 
     1801 tgcaaatcct tcggacacaa gtatttagat ttcatagtta aagtaactta aataatttaa 
     1861 acgctgcctt ccagttccct gcaactccca aagggagatt ggagggaaat aggaaggtca 
     1921 ggcagctaaa tggtgactcg agtgctcgcc gcagggcagg aggatgagga aatccgagac 
     1981 ctggaattct atatttgaat gaacaggacg taaaaagaaa agagttacat tactgcaact 
     2041 ctttcggaat atccaataca tcaattccaa caacagaatt aaaatatgtt actctttcca 
     2101 agaatacttc ggagttttcg gattttcacc gtacttatac tctttccaag aatacttcga 
     2161 agttttaccg tacttaggct taaaaatatt aacagactta ccaagcttac cagcgacagt 
     2221 aaacatagca gcagcatcaa gcaaaggacc aagggcagaa gacacgggaa cgatattctt 
     2281 ttgaatccaa cgattaccag gagtatcctt cgtgtaacgc tcgaattcag ccatgatatt 
     2341 cgcaacctca gaggctttaa gatcggcaga catttgacta gtcttataaa agtctcgaac 
     2401 aggagtccaa gcagcagacg aacgagcgtg aatgccacgg taacgatttt cctcgttagt 
     2461 agcaataatc aaacgctcag cagtctgttc agcaatataa ttagaaatct taagaccacg 
     2521 agcacgagca gaaacctcaa tttcctcagc aatagcctta cgagtctgag cagacaacaa 
     2581 ttcacgctga gttttcatcg tagcaagttc accaatcttg agaaataaag aaagttgctg 
     2641 gccagcatcc agatatttat tcaaaatctc tttctcttta gcctgcaaat taaccaaagc 
     2701 agaatcagca taagacttag cagtagaagc acgaatatta tcaatttcag cctcagtctt 
     2761 gccaaggctt aaccgataag cacgatcacc atacgtagcc tttaaagcat tatcaaggcc 
     2821 ataaccttca gtaataacat cacgctgttt attctcaaaa taagaattca cagcagacga 
     2881 aagttgagca aaaccagtac cataatctgg acgttgtaag ttcaaaggaa gagctgacgc 
     2941 accagacggg gacgcaggag aaggagcaga agccgaagac ggagaagagg cagcctgtcc 
     3001 aacagaagag ccaccttgca tagcaagagc cgggttgatc tgggctgcta gaagacgtgc 
     3061 ttttcgattc acgggaagat tgtattcatt ctcacgattc cattgctcca aattccactg 
     3121 attcgcctta gacatcatct cttcagacca atcacgacca agttgagctt gttcagattg 
     3181 aaatctttgc tgttcctgta aagcccattt attatacttg atactctttt tattcatctt 
     3241 gccagaagca atgccagaag caactgaact tccaagaccg gctccagcag agataatagc 
     3301 acctaagact gtaggatcca tgattattca gatttagatt caacagtttc aatagattca 
     3361 gaagattcgg attcagaagc cttcatttct tctaatttag ccttaacttc atcagaaatt 
     3421 tgttcctgct tatcaagcat atcacgaacc cattcacgaa cttcagaagg agattgaaca 
     3481 taacgagatt taatctcggt catcaattgc tcgtcggtaa atttagcatc cttataagga 
     3541 gaagaaggat taacctgtaa ttgacgaatg aaattacgat aattatcctc accaatatca 
     3601 tttataatac gctgctcatt taaaagcaac gtggcatcag aaacaaaacg aatagaaccg 
     3661 tcaagttctt caacaaaacg caattcatca ataggacgaa cagtagtgaa ttcagagttc 
     3721 gaaagaacat ttataatatc tcttttttcc ataacaaaca aattttagat taatacggca 
     3781 taccattata atcaagattc tgaacaagct tcacatcaaa gaaagattca acgaggaact 
     3841 gatccgtatc aacagtacta tcacactgag aaacaaaaat agaatctaaa acataaggtg 
     3901 aaactttaaa aagaccataa ttaggagtaa aaggaccagt accagaacca agagaaatct 
     3961 tggtaacaat ctcatcaata gtcaaaggag taacccaaga cgttaaagaa gtcaagaaag 
     4021 caccatctac acaatcaata tccgtcttat aagctatata acgaggaaca taacctataa 
     4081 tagatttcac agtaacatta ttaggctgag tagcaacagc atcattcaca aaagtaaaat 
     4141 acggaagagc ttccaatcca agattatcta actcgggttg aggaaggtca gtagcataag 
     4201 tgttcaaaag ctgaagatca ggaccagtta attgataatc caaaacagga accgcatgat 
     4261 aaatgcacat caaaatacca tgctcttgag tttcaaaaga ttcagaacca gaaccagaac 
     4321 caacaccttt acctttaata tcggcttgcg attgctcggt atccaaacta ttatttaaaa 
     4381 cctcggaaat attaatctgg gaagaattac caccaatata ggtacagtga tcagacaaag 
     4441 ccgtagaaag ctttacattc caacgagcct cgagctgctc tttatatcct tggcctgcac 
     4501 attgttggat ttcacgcatg cgctgaatag cattagcaat gcggaaagaa agaatatcaa 
     4561 aattagcatt caaatctgca aaattagtcc taagtacagg actaattccc ggagtaagag 
     4621 accgagtatt tttaacagta atagtagtgc cgtcactagc aacggttcca gttaaataac 
     4681 cctcctggtt agtcaaatga acaccagcac tagaagaatg actaatatta atagtagcaa 
     4741 ccgatcctaa ttgagaagac ggtaaaatac ccataaaaag atctttcggg taattagcat 
     4801 aacgaagaga aaacaaatta tctttcaaaa acaaatcaga aggatcgcct ttatattcag 
     4861 tcaaaatatt accaccagaa taataatcaa aattatacgt atatggttga gccttctccc 
     4921 attgctcaaa acggaaatag tcacaataaa ttttctggta agcagctaaa ggaagaacat 
     4981 tcacattcaa attccacttg gcataaagat taaaatcttt aacagaagaa taattcatat 
     5041 tcttgctagg aagagtagaa aaaccagtat catataaaaa attaccgtaa cgaagataac 
     5101 gtaataactt caaagtctta ggaacacgct caaagccagc gatatcaaga tacgacggat 
     5161 gctgagtatt aaaagctttc aaacaagaag tcaaagtatc ataatcaaaa caaggaatct 
     5221 catcagaaac aactttattt tgaatcaaag aattagcaat gttagattga tccaacatat 
     5281 ttaccaaagc aggattcaaa ttcttattga tcagacgaag aggaacgaaa taccagtcaa 
     5341 aatactcctt gatacgagtg taagcagcgg tattaaccgg catggtacga gtaaagtgca 
     5401 tatccttcaa atttactttc gtaccaggaa gcaacatttt ccaataaaca ggcaacaatt 
     5461 cacctgcctt ggcagtaaaa caaaactttt tagaaaggtc aaaaccggca cgagacggcc 
     5521 tacctttcac atctccataa gaaaaaagtc gtgaacccat aaattaaaat ttaagttaaa 
     5581 atttaagttt aaactaatca aaaggtaaca acacctgctc agaaataaac tcgtgagatt 
     5641 tatctcgagg atactgcgtt accttatatc tataaatact tagagagttt aaatattttt 
     5701 ccaaacgacg acaatactcg tcacattggg aaacagaaga gacacggaaa cgatcacgca 
     5761 tcatcaaaac catgctatct ccaataaaat cgggattcgc aagatcatcc aatcgatata 
     5821 tataaatagt tctacacata tttcaaattt cgttcattaa tttcacgatg cttaacacga 
     5881 ttgtcacaat ccgtcttggc cttagcttgg gctaaagaca aaataggatg agacttgaca 
     5941 agagattcaa aaggcggatg atgttctaaa gcagagacac cattcgaaga aggagtatct 
     6001 tcagtaaccg gggcaatcaa aaaatcaact aactcttcat caagatcaac taaacccacg 
     6061 aggtcagtgt actgagaacg taacatatga taagaaagcc gagaataata ccacttagaa 
     6121 agatcaaccg tcctataaat gtattcataa gacgacgaag gag 
//
