FEATURES             Location/Qualifiers
     gene            19..378
                     /locus_tag="Alpa_01"
     CDS             19..378
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MQSVPSLNLQNNPGRNVSGALGYNLRYWQWKSNIDTVHAGFRAGAAYQSWVAPLDGWNVLTSSGAWSYQSMKVRPQQLNSIFVPQVDSANCSVAFDQLLCNVNFQVYAVQNLDRNGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            389..832
                     /locus_tag="Alpa_02"
     CDS             389..832
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MRNFAYKNPDFVKDDYVPELVENHPCYQESVYDSVMYDETSDGDLIQCDMTQILLNQEKYRRLLGDMNIQNILAQMHPTQSTVMDGMTDEDRFACVISRHCQTMSERQAVLQQLASEKSELTAYAEAMLAEQQSAPDPSPAPDTSVQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            862..1950
                     /locus_tag="Alpa_03"
     CDS             862..1950
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MGLSEKCIAPLVLGGIIAAGASLAGNAIGSASQNKTNQTSIDINRENNAFNAHQAQIQRDWQEKMWGMNNSYNSPNAMISRGLNPFVQGSAAMAGSRSPASGGAAASAASAPSLQAFRPDFSDVGSALASMAQARAAMINAEQNAALTPYKMQQILGDTNYRNIGVGQSGYWTASTGRRSALLDQSKEYQELKNMEFAGRLTSAQEAQILLDSEAQQVLNKYLDEQQQADLFIKGQTLSNLYAQGSLTEAQYKTEMAKAVKTAAETNGIRINNKIASQTADSLIYANIQSNRARGLSSLWDSKNTNVLKNIEYSKDKALRDYYKWSSKHKQKDVDSYELRNAVDYGTRIFQGIGNSIGTKGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2450..2725
                     /locus_tag="Alpa_04"
     CDS             2450..2725
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="LEIQENLIPLRRIEVTAIINALKIIKIMQKFIISVKEKQTGRDVIPPYIVNSLEGLGHYSERVSQLGLIVIVDSIREENDFVELKTQRDEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2851..4530
                     /locus_tag="Alpa_05"
     CDS             2851..4530
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKFSPDLLKAADHCQHRSFITNRYTGARIAVDCGQCDYCIHKRAQKASMRVKTAGSAFKYSYFVTLTYDNEHIPLMRCKVLHSEYEDVVGISGDIHFGDEYHHYIPVSEYQCDDSSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFLSIDAIRSFIHKTQALGKTDYPVAEQYGRDNLIPFLNYVDVQNYIKRLRKYLFKVLGSYESLHFYAVGEYGPVHFRPHFHLLLFTNSDEVAEVLRQCHDKSWKFGRSDFQRSAGGSASYVSSYVNSLCSAPLLYRSCRAFRPKSRASVGFFEKGCDFVEDEDPYAQIEKKIDSVVNGRCYNFNGVSVWSTPPMSYVRTLLPRFSSARNDDSTAIIRILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFVNCSSDVDIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIKTGIEYETKKNYESLRDVFNIRSANPDISDCMFALPANGQERDVLSNVSRETVQLLEQLRYRSAAYCRDMIKHKKLNDANGIFNRMV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:CDL65688.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4558..5949
                     /locus_tag="Alpa_06"
     CDS             4558..5949
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MSDFNPLNRARISTHRSSFDLSSKKLFTAKVGEILPCYWQIAIPGNKYRISSDWFTRTVPVNTAAYTRIKEYYDFYAVPLRLISRALPQAFTQMTDYITSAASSTANSSTLTSVPFVSQTIFNAFFQTANAGDQPNTRDDAGLPIVYGSCKLLDMLGYGSMIASNNPSKAAITKKYLGVDSLNDADNPLVYQTSQTVNALPFLAYQKIYYDFFSNSQWEKHKAYAYNVDYWSGAGNIGLVTDMVQLRYANYPKDYFMGMLPSSQYGSVAVLPSISSSSDSRSLLYYEPSSSATAALQSAGGSSSSVRLSQTVSSSQGIRLNSDLSALSIRATEYLQRWKEIVQFSSKDYSDQMAAQFGIKAPEYMGNHSHYIGGWSSVININEVVNTNLDADSSQASIAGKGISSNSGHTLTYDCGAEHQIIMCVYHAVPMLDWNLTGQAPQLTVTAISDFPQPAFDHSAPQS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5928..6062)
                     /locus_tag="Alpa_07"
     CDS             complement(5928..6062)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MIVVININEVVNTNLDADSSQASIAGKGISSNSGHTLTYDCGAE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gcatttgatc agcttggtat gcagtctgtt ccttctctga atcttcagaa taatcccggt 
       61 cgtaatgttt ctggtgcttt aggttataat cttcgctact ggcagtggaa atctaatatt 
      121 gatactgttc atgctggatt tcgtgccggt gctgcttatc agtcttgggt tgctcctctt 
      181 gatggttgga atgtgttgac ttcctctggt gcttggtctt atcagtctat gaaagttcgt 
      241 ccccaacagt taaattctat atttgttcct caggttgatt ctgccaattg ttctgttgcg 
      301 tttgatcaac tgttgtgtaa tgttaatttc caagtatatg ctgttcaaaa cttggatcgt 
      361 aatggtttac cttattaatt tgtttgttat gagaaatttt gcttataaaa atcctgattt 
      421 tgttaaggat gattatgttc ctgaattggt tgaaaatcat ccatgttatc aggaatctgt 
      481 atatgattct gtgatgtatg atgaaacttc tgatggtgat ctgattcagt gcgatatgac 
      541 ccaaatcttg ttaaatcagg aaaaatatcg tcgcttactt ggtgacatga atatacagaa 
      601 cattcttgct caaatgcacc ctactcagtc tactgttatg gatggtatga ctgacgaaga 
      661 ccgatttgct tgtgtaattt cccgtcattg tcagacaatg tcggaacgcc aagctgtgtt 
      721 acagcaattg gctagtgaga agtctgagct aacggcttat gccgaagcga tgttggcaga 
      781 gcaacagtca gcgcccgatc cgtcgcccgc ccctgacact tctgttcaat gaggttctat 
      841 gatattggag aaagcccctt aatggggctc tccgaaaagt gtattgctcc gcttgttctt 
      901 ggtggtatta ttgctgctgg tgcttctctt gctggtaatg cgatcggatc cgcttctcag 
      961 aacaagacaa atcagactag tatcgatatt aatcgtgaga ataatgcatt taatgcccac 
     1021 caggctcaga ttcagcgtga ctggcaggaa aaaatgtggg gaatgaataa ttcctataat 
     1081 tcccccaatg cgatgatttc ccgtggtttg aatccgtttg ttcaaggttc tgccgctatg 
     1141 gccggctcta ggtctcccgc ttctggtggt gctgctgctt ctgccgcttc tgcccctagt 
     1201 ttacaggctt ttcgacccga cttttcggat gttggttctg cccttgcttc tatggcgcag 
     1261 gctcgtgctg ctatgattaa tgctgaacag aacgctgctc ttactccgta taagatgcag 
     1321 cagatcttag gcgataccaa ttatcgtaat attggtgttg gccagtcagg ttattggact 
     1381 gcgtctaccg gtcgccgatc tgcactcctg gatcaatcta aggaatatca ggagcttaag 
     1441 aatatggagt ttgccggtcg tcttacttct gctcaagaag cgcagattct ccttgattct 
     1501 gaagcccaac aggtgcttaa taagtacctt gatgaacaac aacaggctga tctgtttatt 
     1561 aaaggtcaga ccttatctaa tttgtatgct caaggttctc ttacagaagc tcagtataaa 
     1621 actgaaatgg ctaaagctgt aaaaactgct gctgagacta atggtattcg tattaataat 
     1681 aagattgcct cccaaactgc tgattctctg atttatgcta atattcagtc taatcgtgct 
     1741 cgaggtctat cttcattgtg ggattcgaaa aataccaatg ttcttaagaa tattgagtat 
     1801 tccaaggata aggctctccg tgattattat aagtggagtt ctaaacataa acagaaggat 
     1861 gttgattctt atgagttacg taatgctgtg gattatggta cacgtatatt ccaaggtatt 
     1921 ggcaattcaa tcggtactaa gggtaggtag cgtacttcag gactaaaagc ccatcgcggc 
     1981 gtttgagcga tatacacccg ccgcccgcgt agggcctgat cgaaatatgg agcggagcga 
     2041 cttccttata ggagcgttcc gctccggtat tttagcacga aggtgcgcaa aggcaggttc 
     2101 tatctgacct gccgtgccta tacccttttt gtatatatct tacattttgt caagtccagg 
     2161 agttacattt tgtcaagtcc aggagttaca ttttgtcaag tccaggagtt acattttgtc 
     2221 aagtccagga gttacatttt gtcaagtcca ggagttacac tttgtcaatt ccagtgctta 
     2281 tacttgttca gatctcaact ctcttaatga gtgttaatta agcgaagccc ctagttgtat 
     2341 gcgaagcaaa tccgagttat cctctcggat tctcctatcc cttgtccata aacgtacaac 
     2401 tcacactcca tcacaaatgg tcctgttccc acaatttcta aaaaaaattt tggaaataca 
     2461 agaaaatctt atacctttgc gtcgtataga agttacagct attattaatg ctttaaaaat 
     2521 tattaaaatt atgcaaaagt ttattatttc cgttaaagaa aaacaaactg gtcgtgatgt 
     2581 tattccgcct tatattgtta attctcttga aggtcttgga cattattctg aacgagtttc 
     2641 tcaattgggt cttatcgtta ttgtggactc gattagagag gaaaatgatt ttgtcgaact 
     2701 taaaactcag agagatgaag agtaatcata tttggaagat tgttattggc gctatttctg 
     2761 ctgctttagg ctatatcctt agcgctatcg gtgtttgatt gattttattg tttatattta 
     2821 tatttattgc cattacaggc tcttggttat atgaaatttt ctcctgattt gcttaaggca 
     2881 gctgatcatt gtcagcatcg ttcgtttatt acgaataggt acactggtgc acgcattgcc 
     2941 gtagattgtg gtcaatgcga ttattgtatc cataagcgtg ctcagaaagc gtccatgcgt 
     3001 gtgaagaccg ctggaagtgc ttttaagtat tcttattttg ttacacttac gtatgataat 
     3061 gagcatattc ctcttatgcg ttgtaaggtt cttcactctg aatatgagga tgttgtaggc 
     3121 atttcaggag atatccattt tggtgatgaa taccatcatt atatccctgt ttctgaatat 
     3181 caatgtgatg atagctccgc attgcgtcat atatttttcg aacaggtaca gggtactgtt 
     3241 ccgtatgacc gtgaaattaa ggaatatgtt cctgttaagg acaattggtt tctttctatc 
     3301 gatgctattc gtagttttat ccataagacg caagcccttg gtaaaacgga ctatcccgtt 
     3361 gctgaacaat acggtcgtga taaccttatt ccctttctga attatgttga tgtccagaac 
     3421 tatataaaac gtttacgtaa atatttattt aaagtattag gctcttatga atcgttacat 
     3481 ttctacgctg tgggcgaata tggtccagtc catttccgtc cgcatttcca tttgttatta 
     3541 ttcacgaact cggacgaagt cgcagaggtt ctacgacaat gtcacgataa gagttggaaa 
     3601 ttcggtcgtt cagatttcca acgttccgct ggcggatctg cttcgtacgt atcgagttac 
     3661 gttaacagct tgtgctctgc tcccctctta tatcgttcat gccgcgcatt tagacccaag 
     3721 tcacgagcat ctgtcggatt ttttgaaaag ggctgcgatt tcgtggaaga cgaagaccct 
     3781 tatgcgcaga ttgagaaaaa aatcgattct gtcgttaacg gaagatgcta caacttcaat 
     3841 ggtgtcagtg tttggtcaac tcctcccatg tcgtatgtcc gtaccttact cccccgattc 
     3901 tcgtctgctc gcaatgacga tagtactgcg attattagaa ttcttcgagc tgtacattcg 
     3961 acgccagcaa gaattgcgag gttcggcttc attgactata accaagactc ggtcttgagt 
     4021 cttgtacgtg cttattatca atatcttcaa tctaattcga ttctatctga tgatgacaag 
     4081 attatattac ataatgctcg gtgccttact cggttcgtca actgttctag tgatgtcgat 
     4141 attgaatctt ttattaataa gttatatcgg ctgttcttat atgtctataa attcttccgt 
     4201 aattggcatt tgccttcctt cggttctaat cttgatgctt actccaatcg tattcggttt 
     4261 atcattaaaa caggtataga gtatgagacg aaaaaaaatt atgaaagtct acgagatgta 
     4321 ttcaacatac gctccgctaa cccggacata tcggattgta tgtttgcgtt gcctgcgaac 
     4381 gggcaggagc gtgatgtctt gtcaaatgtt tcacgtgaaa cggttcaact tcttgagcaa 
     4441 ctccggtacc gtagtgcggc atactgtcgt gatatgatta agcataagaa gttgaatgat 
     4501 gctaatggta tttttaaccg tatggtttaa tttttataac ttttaattta ttacattatg 
     4561 agtgatttta atcccttgaa tcgagcgaga atatctacgc atcgatcttc attcgactta 
     4621 agttcgaaga agttattcac tgctaaggtt ggtgagatct taccatgcta ttggcagatt 
     4681 gctattcctg gtaataagta tcgtatttct tcggattggt ttacccgtac cgttcctgtt 
     4741 aatacggccg cttatactcg tattaaggag tattatgatt tctatgctgt gccgttacgt 
     4801 ctgatttctc gtgcgcttcc tcaggcgttt acccagatga cagattatat tactagtgcg 
     4861 gctagctcta ctgctaattc atctacactt acttctgttc cttttgtttc acaaactata 
     4921 tttaatgcgt ttttccaaac ggcgaatgcc ggtgatcagc ctaatactcg agacgatgcc 
     4981 ggccttccta ttgtttacgg ttcctgtaag ttacttgata tgcttggtta tggttctatg 
     5041 attgcgtcta ataatccatc taaggctgct attactaaaa aatatttagg cgttgattct 
     5101 cttaatgatg ctgacaatcc tttggtttat cagacttcgc agacagttaa tgctctccca 
     5161 tttcttgctt atcagaaaat ctattatgat ttctttagta acagtcaatg ggagaaacac 
     5221 aaggcttatg cctataatgt agactattgg tccggtgctg gtaatattgg attggttacg 
     5281 gatatggttc aactgcgtta tgcgaattat cctaaggact attttatggg tatgcttcct 
     5341 tcttctcaat atggttcggt agctgtttta ccgtctattt cttcttcttc tgattctcgt 
     5401 tccttgcttt attatgagcc ctcttcttct gctacagctg ctttgcaatc tgctggaggt 
     5461 agttcctcat ctgttcgttt gtctcaaact gtatcgtcgt ctcaaggtat ccgccttaat 
     5521 tcagatcttt ctgctctctc aattcgtgct acagaatatc ttcagcgttg gaaagagata 
     5581 gttcagttca gtagtaaaga ttattcggat cagatggctg ctcagtttgg tattaaagct 
     5641 cccgagtata tgggtaacca ttcacattat attggtggtt ggtctagcgt aattaacatt 
     5701 aacgaagtag ttaatactaa tcttgatgcc gactcttccc aagcctctat tgctggtaaa 
     5761 ggcatatcca gtaattctgg acacactctt acttatgatt gtggtgctga acatcagata 
     5821 attatgtgtg tataccatgc tgtgcctatg ttggattgga atttgaccgg tcaggctcct 
     5881 cagttgactg ttactgctat atctgacttt ccgcagcctg catttgatca ttcagcacca 
     5941 caatcataag taagagtgtg tccagaatta ctggatatgc ctttaccagc aatagaggct 
     6001 tgggaagagt cggcatcaag attagtatta actacttcgt taatgttaat taccacaatc 
     6061 ataagtaaga gtgtgtccag aattactgga tatgccttta ccagcaatag aggcttggga 
     6121 agagtcggca tcaagattag tattaactac ttc 
//
