FEATURES             Location/Qualifiers
     gene            135..1031
                     /locus_tag="Alpa_01"
     CDS             135..1031
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MLRTKQPMYGLAVKTYQSDIFNNWIQTEWLEGENGINAITAVDTSIGSFTMDTLNLAKKVYNMLNRIAVSDGTYKSWMETVFSAKYVERTETPIYYGGMSQEIIFEEVVSTSATGEEPLGTLAGKGRLAPNKKGGKVVIKIDEPSYIIGICSITPRLDYSQGNNFTMNWETMNDLHKPALDMIGYQDLTMEKAAWWTEEHTSDTEFAQKSIGKTVAWVDYMTNYNKNYGNFASGENENFMTLDRNYNVENPDFTTYIDPAKYNGIFADQSRSSMNFWVQIGVNWKVRRKISAKSIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:AGT39863.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1079..1378
                     /locus_tag="Alpa_02"
     CDS             1079..1378
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKGVEIKEGETIETKVRRITEEKTPITDSAPIVYTNRTDGVIAGYNIRTDRFEIALSAMDKVNKAKIATRNAKNKVEESDTNKEIESNTDTQAGETSVA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1530..2639
                     /locus_tag="Alpa_03"
     CDS             1530..2639
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MAGMALAAGTAGATFAQTAGQAFASSLPQMAMSAGGGLFGSISAQKQQKRAHAYNLEYMDKQFQQNKEAAAINQAYAKELWDYTSFENQRKHMEAANLNPALMYGMGGATGGSASGAGTVGGGGSLPGTNPVSAGAQAGGMSIQGAMMFSEIAKNFAQASKDEADAKKKEGVETDEARARINLINKQTEVEEEVKQLTAANYFKVLKEQDEVWQRARLLSTQADIAEKTKQAEIESVYVKNWLNTATGLEKLAQIEMHEAEAKQILEETRWIAFDMQTRRITAEAAKKRVGVMVQELEKKYKFQNQENIREWLFGSIDALAKGANSVSNFLPMGRVIKVGEKILDQAFDNKGKSKGWREITKEFTNAIE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="similar to AA sequence:MV_prot:putative.gpH"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2641..3594
                     /locus_tag="Alpa_04"
     CDS             2641..3594
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MCLYPKLIRNPKYKPTKTNGGNPPVCYDTRLLYIPAACGECYECRKKKQREYQIRLQEEIRHTHGEFLTLTIDNDWYKKLEKEIPKLPKDTIKETKINGEYDNLIATVALRKFLERCRKETGKSIKHWCITELGEENGRIHIHGIFFGENINQVIQKNWKYGFIYIGQYVNERTVMYITKYMFKQCEYNKLFKGKVLSSSGIGSGYVSRFDSSRNKYKEDGNTNETYQFRNGVKVNLPNYYRNKIYSEEEKEKLWIEKLEKGYIWVMGEKVNARNPEEFSKCLEYYQARAIKLGGAKKEDWEKSKYIRRLIRENRRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4196..4369
                     /locus_tag="Alpa_05"
     CDS             4196..4369
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VEQIKIKVMRTKYIIELGEKKTKEVEIYVIEGTFAEAYKAAKLFMEKNYYIKSIKEA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4391..4564
                     /locus_tag="Alpa_06"
     CDS             4391..4564
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="LGNSKGDEITTIEEAENLKKALRQVSYFEKKTGYEIVSIEIIKNGKEEETKILLDKQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4611..4778
                     /locus_tag="Alpa_07"
     CDS             4611..4778
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MKKGESTRVDMVNEDGEIEKIYLVERTDRRVIIKTVKDYKKEQIENENKKQLSLW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4772..4975
                     /locus_tag="Alpa_08"
     CDS             4772..4975
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MVTKTKKEIWILILKIVAAIAAAILGVLGVQSCTMSMSIAKNNNNATQQTEQKATSEVKNDSINLKF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4980..5273
                     /locus_tag="Alpa_09"
     CDS             4980..5273
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MTEREHRVKDLFQIIRTTTHEEQEEYVIVIGKHLATEARFSTREEAEQFIESKDYDLIWALIAALIDAKDVQEMEAQQEKDVQKVENVIQKQTIKDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gtctgaacat aatagatttt ccaataacaa aaatagacga agtaagagaa aaaatattag 
       61 cattcccttc aacatcgcca tatatagtac caaatgaaaa accatactcg tattcagaaa 
      121 gagacaaaga cggaatgcta agaacaaaac aaccaatgta cggactagcg gtaaaaacat 
      181 accaaagcga catctttaac aattggattc aaaccgaatg gctagaagga gaaaacggaa 
      241 taaatgcaat tacagcagta gatacgagta taggtagttt cacaatggat accctaaacc 
      301 tagcaaaaaa ggtttacaac atgttaaata gaatcgcggt atcagacgga acatataaaa 
      361 gttggatgga aacagtattc tcagcgaaat atgtagaaag aaccgaaact cctatatact 
      421 acggaggtat gtctcaagaa atcatttttg aagaagtagt aagtacatcc gcaacagggg 
      481 aagaaccatt aggaacacta gccggaaaag gaagattagc accaaataaa aaaggaggaa 
      541 aagtagtaat aaaaatagac gaaccttcat acatcatcgg aatatgctcc attacaccaa 
      601 gactcgacta cagtcaaggg aataatttta caatgaattg ggaaacaatg aatgacttgc 
      661 acaaacctgc attagatatg attggttacc aagatttaac aatggagaaa gcagcgtggt 
      721 ggacagagga acacacgtca gataccgaat ttgcccaaaa atcaatagga aaaacagtag 
      781 catgggttga ctacatgaca aactacaaca aaaattatgg aaatttcgct agtggagaaa 
      841 atgaaaactt tatgacacta gacagaaatt acaatgtaga aaatcctgac tttacaacct 
      901 atatagaccc agcaaaatac aacggaatat ttgccgacca aagtagaagc tctatgaact 
      961 tttgggtaca aatcggtgta aattggaaag taagaagaaa aataagcgca aaatcaattc 
     1021 ctaacctata aaaaaataaa ttatgaaata tccaaaatat cacacaccat tttcaaatat 
     1081 gaaaggtgta gaaataaaag aaggtgaaac aatcgaaaca aaagtaagac gtattacaga 
     1141 agagaaaact ccaataacag actcagctcc aatcgtctat acaaatagaa cggacggagt 
     1201 aatagcagga tataatattc gaaccgatag gtttgaaata gccctatcag caatggataa 
     1261 agtaaacaaa gcaaaaatag caacaagaaa cgcaaaaaac aaagtagagg aatccgatac 
     1321 aaataaagaa attgaatcga ataccgatac gcaagcagga gaaacaagtg ttgcgtaagg 
     1381 cataggaagc cgtcactaca ttaaagatga accgaccgaa gggatgtaaa aaaaaagtcc 
     1441 cttcggtacg catgtagtat tatatatcta gtatattgta gaactctttt aaaaaagagc 
     1501 gaaaattgta aacttaaatt attaaaatta tggcaggaat ggcactagca gcaggaacag 
     1561 caggagcaac atttgctcaa acagctggac aagcattcgc aagctcattg ccacaaatgg 
     1621 caatgtcggc aggtggaggg ttattcggaa gtatctcagc acaaaagcaa caaaaaagag 
     1681 cacatgctta taatctcgaa tacatggata aacagttcca gcaaaacaaa gaagccgcag 
     1741 caatcaatca agcttatgca aaagaactct gggactatac aagtttcgaa aatcaacgta 
     1801 aacacatgga agcagcaaat ctgaatccgg cactaatgta cggaatggga ggagcaacag 
     1861 gcggaagtgc atccggtgct ggaacagtag gcggaggagg aagtttacca ggaacaaatc 
     1921 ctgtaagtgc aggagcgcaa gcgggtggaa tgtcaataca aggagcgatg atgtttagcg 
     1981 aaattgcgaa aaactttgca caagcaagca aagacgaagc agatgcaaag aagaaagagg 
     2041 gcgtagaaac agacgaagca cgtgcaagaa tcaacttgat aaacaaacaa acagaagtag 
     2101 aagaagaagt aaagcaatta acagcggcaa actacttcaa ggtactcaaa gaacaagacg 
     2161 aagtttggca aagagcaaga ctcctctcaa cacaagcgga tatagcagaa aaaacaaaac 
     2221 aagccgaaat agaaagcgta tacgtaaaaa attggctcaa tacagcaaca ggactcgaaa 
     2281 aacttgcaca aatagaaatg catgaagcag aagcaaaaca aatcctagag gaaacaagat 
     2341 ggatagcgtt tgatatgcaa acaagaagaa taacagcaga agcagcaaaa aaaagggtag 
     2401 gagtaatggt gcaagaacta gagaaaaaat acaaattcca aaatcaagaa aatataagag 
     2461 aatggctatt tggaagtatt gatgctctag caaaaggagc aaacagtgta tccaacttct 
     2521 taccaatggg aagagtaatt aaagttggag aaaaaattct agaccaagcc ttcgacaata 
     2581 aaggaaaatc gaaaggatgg agagaaatca caaaagaatt cactaatgca atagaataat 
     2641 atgtgtttat atccaaaatt aataagaaat ccaaaataca aaccaacaaa gacaaacggg 
     2701 ggaaatcccc ccgtttgtta tgatacaaga cttctatata tcccggcagc atgcggagaa 
     2761 tgttacgaat gcagaaaaaa gaaacaaaga gaatatcaaa taagattaca agaggaaata 
     2821 agacatacgc acggagaatt tttaacatta acaatagata atgactggta taagaaacta 
     2881 gaaaaagaaa taccaaaatt accaaaggac acaatcaaag aaacaaaaat aaatggagag 
     2941 tatgacaatt taatagctac agttgcatta agaaaatttc tagaaagatg cagaaaagaa 
     3001 acaggaaaat ctataaaaca ttggtgtata acagagttag gagaagaaaa cggaagaata 
     3061 catatacacg ggatattctt cggggaaaac ataaatcaag taatacaaaa aaattggaaa 
     3121 tatggattta tatacatagg acaatacgta aacgaaagaa ctgtaatgta tattacaaaa 
     3181 tacatgttca aacaatgtga atacaataaa ttattcaaag ggaaagtgct ttcaagtagc 
     3241 ggtattgggt cggggtacgt ttcccgtttc gattcctcgc gcaataaata caaagaagat 
     3301 ggaaatacaa atgaaactta ccaattcaga aacggggtaa aagtcaacct tccaaattat 
     3361 tacaggaata aaatttattc agaagaagaa aaagagaagt tatggataga aaaactagag 
     3421 aaaggctata tttgggtaat gggggaaaaa gtaaacgcaa gaaatccaga agaatttagt 
     3481 aaatgtttag aatattatca agcgcgagcc ataaagctgg gtggagcaaa aaaagaagat 
     3541 tgggaaaaat caaaatatat cagaagactg ataagggaaa ataggaggcg ttaaaacgcc 
     3601 aacccttcgg cattggacgc cgtgcggaat gcgctatgca gcgtgtaccg tgcggcgtgc 
     3661 tttttgtcac ctacggcgac cgaaaaccct aagggttttc catcctttcc ttcttcggtg 
     3721 tataacggga atcgactctc ctgtttgtcc gaaggctagc taccttctcg aagcggtttg 
     3781 tagtctggag tgcacccgcc agacaagctg gcgtggtgtg cgcctccggc gatactaagg 
     3841 tgctagtcgc tacgggcgtt tccacgccct gtgcccgagg agcgctcaaa cgtcgcgcag 
     3901 gcttaccatt cggcattgga caccatgcgg aatgcgctat gcagaatacg ccatgcggcg 
     3961 tggtaattat gtgacacact ccgagaatta cggagtgaaa gagaaaagga tagaaaaaaa 
     4021 aatgaagaaa taatttacac aaattggtaa attagtcaca taaaattctc ttaagattaa 
     4081 gaattttaag aaaaaaagag aaggaaaaat ttgcagataa aaataaaatg cttatctttg 
     4141 tcatgtgaaa aaaaaacaag aaaaataaga aaaaaattta caaacaatgt tccacgtgga 
     4201 acaaataaaa atcaaagtta tgagaacaaa atacattatc gaattaggag aaaaaaaaac 
     4261 aaaagaagta gaaatctatg taatagaagg aacatttgca gaagcttata aagccgcaaa 
     4321 attattcatg gaaaaaaatt attatattaa atcaataaag gaagcataaa atgaaaagat 
     4381 ttactattta ttgggaaact ccaaaggaga cgagattaca acaatcgaag aagcagaaaa 
     4441 tctgaaaaaa gcattaaggc aagtaagcta ctttgagaaa aaaacaggtt atgaaattgt 
     4501 aagtatagaa ataattaaaa atggaaagga ggaagaaaca aaaattttat tggataaaca 
     4561 ataaagaatt caaaacatat gggagaatga aagagtacac attcttccat atgaagaaag 
     4621 gagaatcaac acgggttgat atggtaaacg aggacggtga gatagaaaaa atctatctag 
     4681 tcgaacgaac tgatagacgt gtaattataa agacggttaa agattacaaa aaagaacaaa 
     4741 tagaaaacga aaacaaaaaa caactgagtt tatggtaaca aaaacaaaaa aagagatttg 
     4801 gattttaata ttgaagattg ttgcggcaat cgccgctgca atcttaggag tattaggagt 
     4861 acaatcgtgc acaatgagca tgagtattgc gaaaaataac aacaacgcta cgcagcaaac 
     4921 agaacaaaaa gctactagcg aagtaaaaaa tgatagtatt aacttaaaat tttgaaatta 
     4981 tgacagaaag agaacacaga gttaaagatt tgtttcaaat tatcagaaca acaactcacg 
     5041 aagagcaaga agaatacgta attgtaatcg gaaaacatct agcaacagag gcgagattct 
     5101 caacaagaga agaagcagaa caattcattg aatcaaaaga ttatgatttg atttgggcat 
     5161 taattgctgc attgattgat gcaaaagacg ttcaagaaat ggaagcacaa caggaaaaag 
     5221 acgtacaaaa agtagagaat gtaatacaaa aacaaaccat taaagactta taattatggc 
     5281 aataacaaaa gcaatcggaa agaataccgt aggagacggt aacaaaatga ctgtaaggtt 
     5341 aaacaactat tacagaagta cacacgattt atcatacgtt tggaaaaata cgcaggcggt 
     5401 cggtcctgtc gtgccattcc tgtgcgaata tgcacagatt gacgatacgc atgaaattga 
     5461 tttatcggca atggtaatta cacatccaac agtaggacca ttatacggga gcttcaaatt 
     5521 acaattagat gtatatgtag caccaatcag gctataccaa aagttattac ataataacac 
     5581 aatggggatt ggtctggata tgacaaaggt aaaattacct gtaatacaag tagatggaat 
     5641 gtcgacagat gataacccga caaattcaaa ccaatggact caaataaatc caagtgcact 
     5701 actagcatat ctagggctaa gaggatgggg taaaattaaa gcgtcagaca taagcataaa 
     5761 aaagaacgga gtaccactac tagcatattg ggatatatgg aaaaactact atgcaaacaa 
     5821 acaagagcca aacgggaaag ttctaagcac atatcatata atatcaaaag gaagtataaa 
     5881 tggtacttct gtagataatt gggagaaatt caggatttta aaagtaggga aaaacaacat 
     5941 acaaataagc aaatgggata atcaaaacca agaattaaaa gtatacgaag gtattgtaca 
     6001 tatgtacaat aacggcgaat caaaaagagg aacagtaaga gaactactgg gagaaggaaa 
     6061 tttcgacagt gcaagcagct tttatacatg gagtatcgaa caa 
//
