FEATURES             Location/Qualifiers
     gene            12..182
                     /locus_tag="Alpa_01"
     CDS             12..182
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MNEKVKKIVKWIAVIAAAIGAAAAVILEQGCTHKYSLKANGVQIDTINVETTTKIK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            184..489
                     /locus_tag="Alpa_02"
     CDS             184..489
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEKKFRSQLLAESGKKEEEIKNVNLEIEERKVSKNGIFVLIRNKNNKWVITMCGSLVNAKEFDTKEEAEEHIAKKEWEDILTAAFIFILRINEDSKNTKKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            493..2535
                     /locus_tag="Alpa_03"
     CDS             493..2535
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKKTLGGDRIRSESKMEVYLPNFGRSSHNVGKIIRTSQACGTIVPYWCQIGLDGTTFYIDITTKVKTLPTTGPVFGSFKHQIDVFVIPIRLYVAALHNNALGVGLNMSKVLLPQFLVNTANTSIYKNDTNRGQVNPSSLLSYLGIKGFGYSSVNQYVRRFPAIFNLAYWDIFKNYYANKQEENAYVVTGVNHIWKSISVGTGVNWLKTWTDNKSTAYSISPTTDSPKYIKLEFEENVSPEEVNEIQFLTNIPGSTQKVNELTKLGDSFVFERTDPDALGLREPRNPRKATKIYAYRVLKSIQIAYNADSTGENSITMPDNKKIKLTAFPLKNIDEERTAILAAPSTAAYTVPNIRMPYGAATGGLTLPNYNRTRTYVSANSWFSQAGLAVKTYLSDRFNNWLNTEWIDGTTGGINAITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSTTLPESPIFCGGMQSEIAFDEIVSNAATDEEPLGTLAGRGVATMYKSGRGLKIKCTEPCMIMALGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIAEEAAAWSTEATGNHELVYQSLGKQPSWIEYTTDVNETYGDFAAGMPLAFMCLNRVYEENSDHTIANASTYIDPTIYNKIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2540..2863
                     /locus_tag="Alpa_04"
     CDS             2540..2863
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKTATNRNGCINDPNLTYQAEPREVKLRKIISGESSSMEDGVFPTIYTEKKDGVLPEYDIRTDRFEVAIDAMDKINQSAANQIAKNKGETESVKNFGTEVKTDPEKS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3142..4227
                     /locus_tag="Alpa_05"
     CDS             3142..4227
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MQQQKEMMENAAQINYKYGEMAAENAFERQQVLYNRTYQDQSYANQVAQMDAAGLSPGLMYGKGGAGGGGAGSTTGAPMGATGATGAGAAADPNLQLQALMSLRQVRMSERKNEAEINLLNTQAEALKAEAGKNKEETTSIIEKRIWEVKQEMFKGWKGFIDTANQLWDQMVRWQPTEKTTIDGKEIEIPKYFEIEDDKFGKIVFGEESFQGDMMKAEKQILQGTAAIKTLESIYADEKLSAEIRKINADACSAMAQAAYFYAAGKTQEAEAKVAEARRRTEEATADLRELQYWTEIANTILKLAQVVGNMVIGGKTGKAIREYTEKKMNNTPPKNSSTVTQHYDPEMNFKGVDKTVTTKW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4267..5178
                     /locus_tag="Alpa_06"
     CDS             4267..5178
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VCLYPSIIENPKYAKSNKNGKRARDRRLRWIQIPCGHCEECRRAKANEWRVRLMEEIKSYPKNIIFATLTFSEESLKKLEYDEKEPNKAPQKAISLFRKRWWKKYKTPLKHWLITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWIFFGYEVSEKTINYIVKYVTKRDEANPEFNGKIFTSKGIGIGYINKNSLNKHRYQDKFTEETYRAASGIKLALPTYYKQKLWTDQERESLRIIKEEQQVKYYNKTPIKVETLEQYKEYVNAVMYWQSVKKYDGKRKKGDMQRICRSDHKEGKTNS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5182..5544
                     /locus_tag="Alpa_07"
     CDS             5182..5544
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MGSGICNQKNRKHTEEEQNYRAYRDRGGIGDRSASLIELIGTERVSRRDYGYEGTFYVTEDGETYDNEYMNTHNPIRTGVNFYEVSNWRYNEGKEMYEPVIRRIVMIKIRFVEYQLSLDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tcactagacc tatgaatgaa aaagtaaaga aaatcgtaaa gtggatcgca gtaatagcag 
       61 ctgcgatcgg cgcggcagcc gccgtgatcc tagaacaagg gtgcactcac aagtacagcc 
      121 ttaaggcaaa cggtgtccaa atcgacacaa tcaatgtaga aacaacaaca aaaattaagt 
      181 aacatggaaa agaaattcag aagtcagctg cttgctgaaa gcggaaaaaa agaggaagaa 
      241 atcaaaaatg taaacctcga gatcgaagag agaaaagtat cgaaaaacgg catattcgta 
      301 ctgattcgca acaaaaacaa caaatgggtg atcacaatgt gcggctcgct cgtaaatgca 
      361 aaggaattcg acaccaaaga ggaggctgaa gaacacatcg ccaaaaaaga gtgggaggac 
      421 atcctgaccg cagcattcat attcatcctg cgcataaacg aagattcgaa aaacactaaa 
      481 aaagaataaa ccatgaaaaa aacactagga ggagacagaa ttcgaagcga aagcaaaatg 
      541 gaagtatatc tgcctaattt cggcagatcg tctcacaacg taggaaagat aatccgaaca 
      601 tcacaggcat gcggcacaat cgttccctat tggtgtcaga taggtttgga cggcacaacg 
      661 ttctacatcg acatcacaac gaaagtgaag acgctgccaa caaccggacc tgtattcgga 
      721 agcttcaagc accagatcga tgtgtttgta attccgatca ggctctacgt agcagcgctg 
      781 cacaataatg ccctgggagt aggactgaac atgagcaagg tgctgctgcc gcaattctta 
      841 gtcaacaccg ccaacacatc aatctataaa aacgatacca atagagggca agtcaatccg 
      901 agctcgctgc tctcatactt gggaataaaa ggattcggat attccagcgt caatcaatac 
      961 gtccgaagat ttcctgcaat attcaatctg gcatactggg atatattcaa aaactactac 
     1021 gccaacaagc aggaagaaaa cgcatacgta gtcaccggag taaaccatat ctggaagagc 
     1081 atcagcgtag gaaccggggt taactggctc aagacatgga cggacaacaa aagtacagca 
     1141 tacagtatca gtccgacaac tgacagtcca aagtacatta agctggagtt cgaggagaac 
     1201 gtctcacccg aagaggtcaa tgaaatccag ttcttgacga atattcccgg ctcaacgcag 
     1261 aaagtaaacg agctgacaaa actaggagac tccttcgtat tcgaacgaac agacccggat 
     1321 gcattaggac taagggagcc aagaaaccca agaaaggcaa ccaagatcta cgcgtacaga 
     1381 gtcctaaaat ccatccagat cgcctacaac gcggattcga ccggagagaa ttcgataaca 
     1441 atgccagaca acaagaagat caaattaaca gcgtttccgt taaaaaacat cgacgaagaa 
     1501 cgaactgcaa tcttagctgc acccagtacc gcggcatata cagtaccaaa catcagaatg 
     1561 ccatacggag ctgcaacagg aggcttaaca ctaccaaact ataaccgtac gagaacatat 
     1621 gtcagtgcaa attcatggtt ttcacaagca gggttggcgg taaaaacata cctcagcgac 
     1681 agattcaaca actggctgaa taccgaatgg atcgacggaa caaccggggg gatcaacgcg 
     1741 atcacagcag tggatgtgag cgatggaaaa cttacgatgg atgctctgat cctccaaaaa 
     1801 aagattttca acatgctgaa ccgcgtagcc attacagacg gcacctatca agcgtggaga 
     1861 gaggcgacat acgggatcag aagcacaacg ctgcctgagt ctcccatctt ctgcggcgga 
     1921 atgcagagcg aaatcgcatt cgacgaaatc gtatcgaatg cagcgacaga cgaagaaccg 
     1981 ctgggaacac ttgccggccg aggggttgca actatgtaca aatccggaag aggcttgaaa 
     2041 atcaaatgca cagaaccctg catgatcatg gcactgggat caatcacacc tcgaattgac 
     2101 tacagtcagg gcaataagtg gtggacaaga ctgcagaaca tggatgactt ccacaagccg 
     2161 acattagacg caatcgggtt ccaagaactg atcgcagaag aagcagcagc gtggagtaca 
     2221 gaagccaccg gaaaccatga actcgtatac cagtcattag gaaaacagcc atcatggatc 
     2281 gaatacacaa cagacgtaaa cgaaacatac ggcgattttg ccgcaggaat gccgttagca 
     2341 ttcatgtgct taaacagagt gtacgaagaa aactcggatc acacaatcgc caatgcttca 
     2401 acgtatattg accctacgat atacaacaaa atattcgcag agtcgagatt gagctcacaa 
     2461 aacttctggg tacaggtagc attcgacgta acagcacgcc gggtaatgtc agcaaaacaa 
     2521 attccaaatt tataacgcca tgaaaacagc aacaaacaga aacggatgca tcaacgatcc 
     2581 gaacctcaca taccaagcag aaccaagaga agtgaagctg agaaagataa tcagcggaga 
     2641 atccagcagc atggaggacg gagtgttccc gacgatctac acagagaaga aagacggggt 
     2701 gctgcctgag tatgacataa gaacggaccg atttgaggta gcaatagacg cgatggacaa 
     2761 aatcaaccag agcgcagcga accagatcgc gaagaacaag ggtgaaactg aaagtgtgaa 
     2821 aaacttcggg acagaggtga aaaccgatcc cgaaaagagc taaagcagtc gtataaagct 
     2881 ctaccaaaaa ccaaagaggg gggatgcttc cgccccccct cttttagccc ttgcaaatgc 
     2941 atgtggtaca gcgcggtaga cgtttataca tatataacaa gaacataagg tataaattct 
     3001 tttaagaaaa gaacgaaaat ggacttcaag aagctactga aattactcga gaaaggaggc 
     3061 gatatgatga accctatctc agggatcatt ggcggcgcat caggaattct caatatgctg 
     3121 ggcctaggca ggaaaagaca gatgcagcag cagaaagaaa tgatggagaa cgcagctcaa 
     3181 ataaactata aatacggaga aatggcggcg gagaatgcgt tcgaaaggca gcaggtgtta 
     3241 tacaacagaa cctaccaaga ccaaagctac gccaaccaag tcgcacagat ggatgcagcg 
     3301 ggattatctc ccggcctgat gtacggtaaa ggcggggccg gcggcggagg ggcaggatcg 
     3361 acgacgggcg ctcccatggg agcaacgggt gctaccggtg caggtgcagc cgccgatcct 
     3421 aatttgcagc tgcaggcact aatgtcacta cggcaggtgc ggatgagcga gcgaaagaac 
     3481 gaagcagaaa tcaacctact caatacgcag gcagaggcac tcaaggcaga agcgggcaaa 
     3541 aacaaagaag aaaccacatc aataatcgaa aaaaggatat gggaagtaaa gcaagaaatg 
     3601 tttaaaggat ggaaaggctt cattgacaca gcaaaccagc tatgggatca gatggtaaga 
     3661 tggcagccca cagaaaagac aacaatcgac ggcaaagaaa tcgaaatacc taaatacttc 
     3721 gaaatagagg atgacaaatt cggtaaaatc gtattcggag aagaatcatt ccagggcgat 
     3781 atgatgaaag ccgaaaaaca aatcctccag ggaacagcag caattaaaac tctggagagc 
     3841 atatacgcag acgaaaaact atcggcagaa atcagaaaaa taaacgcgga cgcatgcagc 
     3901 gcaatggcgc aggccgcata tttctacgca gcgggcaaaa ctcaagaagc agaagcaaaa 
     3961 gtggccgaag caagaagaag aaccgaagaa gcaaccgcag atttgcgaga actccaatac 
     4021 tggaccgaaa tagcaaacac aatcctcaag ctggcgcaag tagtgggaaa tatggtaatc 
     4081 ggaggaaaaa caggaaaagc gatcagagaa tacacagaaa agaagatgaa caatactccc 
     4141 cccaagaact catcaacagt aacgcagcac tatgatccag aaatgaattt caagggagtg 
     4201 gacaaaactg taacaacaaa atggtagaaa aaacgatttt tagggggaaa atttcaatta 
     4261 aaagccgtgt gcctatatcc aagtatcata gaaaacccaa agtatgccaa atcgaataaa 
     4321 aacggcaaaa gagcaaggga ccgtcgtcta agatggattc aaattccatg cggacactgc 
     4381 gaagaatgca ggcgcgcaaa ggcaaatgaa tggagagtga gattaatgga agaaataaaa 
     4441 tcttatccaa aaaacattat atttgcaacg ctgacattct ccgaggaaag cctaaaaaaa 
     4501 ctagaatatg atgaaaaaga accgaataaa gcacctcaga aagcaatcag cctattcaga 
     4561 aagcgatggt ggaaaaagta taaaacaccg ctcaaacact ggctaatcac agaaatgggg 
     4621 catgacaaca ccaaaagaat acacctgcac ggcatcatat ggacagaact gacggaggag 
     4681 cagttcgaaa aggaatgggg atacggctgg atattcttcg ggtatgaagt aagcgagaaa 
     4741 acaataaact acatcgtaaa gtacgtgaca aagagagacg aagctaatcc tgagttcaac 
     4801 gggaagatat ttacttcaaa agggattgga ataggctata taaacaagaa ctcgctcaac 
     4861 aagcacagat accaagacaa attcacagag gaaacataca gggcagcctc aggaataaaa 
     4921 ctagcgctgc cgacatacta caaacagaag ctatggacag accaagaacg agagagcctc 
     4981 cggatcataa aggaagagca gcaggtaaag tattataaca agactcctat caaagtagaa 
     5041 acattggagc agtacaaaga gtatgtaaac gcagtaatgt attggcaatc agttaaaaag 
     5101 tatgacggaa agagaaaaaa aggagatatg cagaggatat gcagatctga tcataaagaa 
     5161 ggaaaaacta attcgtgaaa tatgggaagt ggaatttgca accagaaaaa tagaaagcat 
     5221 actgaagagg aacagaatta tagagcctac agagacagag gaggcatcgg agacagatct 
     5281 gccagtctca tagaattgat cggaacagaa agagtatccc ggcgagacta cggatacgaa 
     5341 ggaacgttct acgtaacaga agatggagaa acatatgaca atgaatatat gaacactcac 
     5401 aatccaataa gaaccggcgt taatttctat gaggtgagca actggagata caacgaagga 
     5461 aaagaaatgt acgaacctgt cattagaaga atagtaatga tcaaaatcag atttgtcgaa 
     5521 tatcaactat cactagacct atgaatgaaa agtaaagaaa atcgtaaagt ggatcgtttc 
     5581 tactttgata ggagtcttgt tataatactt tacctgctgc tcttccttta tgatccggag 
     5641 gctctctcgt tcttggtctg tccatagctt ctgtttgtag tatgtcggca gcgctagttt 
     5701 tattcctgag gctgccctgt atgtttcctc tgtgaatttg 
//
