FEATURES             Location/Qualifiers
     gene            complement(121..741)
                     /locus_tag="Alpa_01"
     CDS             complement(121..741)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MAHFTGLKQLQNHPHRSGFDIGAKNVFSAKCGELLPVYWDLGIPGCTYDIDIQYFTRTRPVQTAAYTRIREYFDFYAVPIDLIWKSFDASVIQMGETAPVQAKDILTALTVSGDLPYCSLSDLGLSCFFASGSMSVPSLKSWQANNAYANIFGYIRGDVNYKLIHMLNYGNIIPNNMPALNIGNSNYRWWNREAKKQDRPKSDREQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(744..2414)
                     /locus_tag="Alpa_02"
     CDS             complement(744..2414)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MTEKEREKYLATECFHPRKVTNRYTHETLFVRCGTCPSCLVHRSNIQCALISNMSSHFKHAYFFTLTYSDEFVPRVSLEVVERCDAESEIDAYMSDSDPRHLPYDDSRYQIAATYLPRSGCFRVHDSGRVRDFSETEDSYQFLHTFSGKEIRDLLVSSNGRYDFSRKCVVFPSIDECRNEILVLNPYDQNLFFKRLRKLISERYDEKICYYLVSEYGGRTYRPHWHGILFFNSDALTSSICELVSKSWSYGRTDCSLSRGSAAGYVASYINSFVDLPDFFNRHKEIKPKSYHSKGLSVNSLFSRTSDISQVDEVAASCFDGFSVPINGEYVTVKPSRSYEHTVFPRISDPFFKDPHSCVDLFFGAFTASNRLIRDGYISIDENLSVWQLSRRYAEYYFSVRAGHYNVSYYDSLIFKFTRLETDQIDFDCITGKIYRFFSAVSRTLRFWHLDCYVLPEDLKKSLLKLFISSVDYWSKKELKFINDFYDYLSAHPESDSFLKSRTVGFVCPPKENISFWNDLNTTLSSLKNSVTQRIFQKVKHKNYNDISGLLFNLNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2417..2566)
                     /locus_tag="Alpa_03"
     CDS             complement(2417..2566)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MEMYLISYQKQGSAPVVYVASDNNLMATVNQALKESEGAPVLVSSAKTI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2570..2776)
                     /locus_tag="Alpa_04"
     CDS             complement(2570..2776)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MRITPQQWIEIVKLISTFIIGVITTLFVQSCTISMSVSKNNQNSTQKTEQTSTSSIDSTKININPKNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3415..3630)
                     /locus_tag="Alpa_05"
     CDS             complement(3415..3630)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKENFYFVLYLGTSVLNVYAGSQSNARAYFRRWIEKNLPVYYHESDFWFLRYECFSDFLASRYPVKFDLKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 20 and 21 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3764..4861)
                     /locus_tag="Alpa_06"
     CDS             complement(3764..4861)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VLNQFLSSDGYDIAIVPALIGAIGAIGAAGFGAAANNKNVAQNQMNNDFNAREAQKARDFQLEMWNRQNEYNSPANQRKLRAEAGYNPYLGYDSNTGVAGSTGSTSQAQAASPLSLNPEVYSELGSQLGRAGQMIYQERESNARTKALQGDADVARAQALQVFSNVDWGKLSPDYKKWMRETGLQRAQLDYDTNKQNLQNLRWSNLIQMAERTNLLLSANTKRTLNKYLDQSEQTRINVMAAQYYDLMAAGHLKYQQCKESIAKQILYSKQGSWYDSMANKNNLDYRNALALADDYIAAMSTQYESQTAYNMGFGQKAQEAGRRDAESKSFKSLIDRWNYNKRYYEEGLNTLQVVANAIGSIRGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4836..5351)
                     /locus_tag="Alpa_07"
     CDS             complement(4836..5351)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MIMKEKKELCFGCGFREFTPTREISTFPSTRIGEISLEVDPVEQFRFETETFGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRFLDSKSPRSSSLQEQLDKLNPSDDELLSMVKSRHLQHPSEILAWIDSINELAEDMRSEALKQTAENESTKFDSSGSDVSGAESVPVQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5358..6386)
                     /locus_tag="Alpa_08"
     CDS             complement(5358..6386)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MGVLPNSQFGDIAVIDIEGGLNIPASRISLSSNNRPTIGIKVGAQVSSPNNCSITNSSGNLSTGDILSVGIPAASYKLQSSFNVLALRQAESLQKYREITQSVDTNYRDQIKAHFGVNVPASDSHMAQYIGGIARNLDISEVVNNNLQGDGEAVIYGKGVGTGTGSMRYTTGSKYCILMCIYHCMPVLDYDISGQHPQLLATSVDELPIPEFDNIGMEGVPLVQLVNSNLYKTNKSVKIDSILGYNPRYYAWKSNIDRIHGAFTTTLQDWVSPVDDSFLYSTFGTPSSGSFVTWPFFKVNPNTLDNIFAVKSDSTWESDQFLVNSYVGCKVVRPLSRDGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgctgttcct attgatttga tctggaagtc atttgacgct tctgttattc aaatgggtga 
       61 gacagctcct gttcaagcta aggatatttt gactgcgttg actgtttccg gagatttgcc 
      121 ttattgttct ctatcagatt taggtctatc ttgttttttc gcttctcgat tccaccaacg 
      181 ataattagaa ttaccgatgt ttagagcagg catattatta ggaataatat tcccataatt 
      241 taacatatga ataagcttat aatttacatc tccacgaata taaccaaaaa tattagcata 
      301 agcattattc gcctgccaag atttcaagct agggacagac atagaaccag aagcgaaaaa 
      361 acaagataga cctaaatctg atagagaaca ataaggcaaa tctccggaaa cagtcaacgc 
      421 agtcaaaata tccttagctt gaacaggagc tgtctcaccc atttgaataa cagaagcgtc 
      481 aaatgacttc cagatcaaat caataggaac agcgtaaaaa tcgaaatact cacgaatacg 
      541 agtataagcg gcagtttgaa ccggacgagt acgagtaaaa tactgaatat caatatcgta 
      601 cgtacaacca ggaataccta aatcccaata aacaggaaga agttcaccac acttcgcaga 
      661 aaacacattc ttagctccaa tatcgaaacc ggaacgatga ggatgattct ggagctgttt 
      721 taaacctgta aaatgagcca taattaaaaa tttaaattaa acaataaacc tgatatatca 
      781 ttataattct tatgtttaac tttctgaaaa atacgttgag taacagaatt tttcaaagag 
      841 gacaaggtag tatttaaatc attccaaaat gaaatattct cttttggagg acaaacaaaa 
      901 ccaacagtcc tggatttcaa aaaagaatct gattcaggat gagcagaaag ataatcataa 
      961 aaatcattga taaatttcaa ttccttttta gaccaataat caacagaaga aataaacaac 
     1021 ttgagtaaag acttctttaa atcttcaggt aaaacatagc agtcgagatg ccaaaaacga 
     1081 agagtacgac taacggcaga aaaaaaccga taaattttac cagtaatgca atcaaaatca 
     1141 atttggtcag tttccaaacg ggtaaacttg aaaattaaag aatcataata agaaacatta 
     1201 taatgaccag ctcgaacact gaaataatac tctgcataac gcctagatag ctgccaaaca 
     1261 gagaggttct catctattga tatatatccg tcacgtatga gcctgttgga cgctgtgaac 
     1321 gcaccgaaaa ataagtcaac acagctgtgt ggatccttaa aaaaagggtc agagattctg 
     1381 gggaatactg tatgttcata cgaccgtgaa ggtttgacag tgacatattc accattaatc 
     1441 ggaacactga atccatcaaa acacgaagcg gcaacttcgt ccacttgtga aatgtcggac 
     1501 gttcgagaaa agaggctatt aaccgataac cctttggagt ggtaggattt aggcttaatt 
     1561 tctttgtgtc ggttaaaaaa atctggtaaa tcgacaaaac tattaatata tgacgcaaca 
     1621 taaccagctg cggaacctct cgagagtgaa caatctgtac gaccgtaact ccaactctta 
     1681 gataccaact cacatataga cgaggtgagt gcgtccgagt taaagaataa tataccatgc 
     1741 caatgcggac gatatgtccg tccaccatac tctgatacaa ggtagtaaca tattttttca 
     1801 tcgtatctct ctgatattaa tttacgtaaa cgtttaaaaa ataaattctg atcataagga 
     1861 ttcaaaacca aaatttcatt acgacattca tcaatagaag gaaaaacaac acatttgcgt 
     1921 gaaaaatcat aacgaccgtt agaagatacc aacaaatcac gtatttcctt gccggaaaaa 
     1981 gtatgaagaa actgatatga atcctctgtt tctgaaaaat cgcgaacacg accggagtcg 
     2041 tgaacgcgaa aacagccaga acggggtaaa taagtagctg ctatttgata tctagaatca 
     2101 tcatagggta aatgtctagg gtcagaatcg gacatataag cgtcaatctc actttcagca 
     2161 tcacaccttt ctacaacctc aagagataca cgagggacga actcatccga ataagtaagc 
     2221 gtaaaaaagt aggcatgctt aaaatgagac gacatgtttg atattaaagc acattggata 
     2281 ttagaacgat gaacaaggca tgacggacac gtaccacaac gaacaaacag tgtttcatga 
     2341 gtgtatctat tagtcacctt tcgaggatga aaacactctg tagctaaata tttttcccgt 
     2401 tctttttcag tcatagtcaa atagttttag cagatgaaac caatacaggc gcaccttcag 
     2461 actctttcag agcctggtta accgtagcca taagattatt gtcactagca acataaacaa 
     2521 caggggcaga gccttgcttc tgataagaaa tcaaatacat ttccataatt taaaaatttt 
     2581 tagggttaat attaatttta gtagaatcaa tagacgacgt agaagtctgt tcggttttct 
     2641 gcgtcgagtt ttgattattc tttgaaacag acatagaaat ggtacaggac tgcacaaaca 
     2701 aagtggtaat aacaccaata ataaacgttg aaattaattt tacaatttca atccattgtt 
     2761 gaggagtaat tctcataaca aaacaggttt gagttaaaca acaccacaat gatagaaata 
     2821 aaaatcataa taaccaaata aaatagtatt ttctttagag gcagtgtaat ttttcaaaag 
     2881 aaagacaagg gataagagct ttgaataagg taaattcaaa gcccttcggg aaaaaattaa 
     2941 ataggcttcg ccaataaaat gaactagggg gcagcgatac cgaaccgttc cgcccttcgg 
     3001 gcgcaggtat gtgctataat aatataaaat agtaaaaaaa taaacaaata ataaatatag 
     3061 cacaacactt taacaagaac gaggaacaca tcttccatgc atagctacgc tcgcatgggg 
     3121 ctgtgttcct cgtgggggaa gctgcgcaac ggcacgtcct gcagctggta ggtgttaaca 
     3181 ttgaatggat ctatgtttag cacctcgggc cgggcggcct tggtgtatat ggggaaggtg 
     3241 aggtatggtt aagacagacg ggcggctacc ttaacaaata gattagaaga ttgacggatc 
     3301 tcccacgctt cgcgcgtgga gtgcggcttc gccgataata aggtactagt cgttaagggg 
     3361 gcttaaaaaa gcccctgtta cccaatttgc gttcaggcca cgcaggccgt gaagctacaa 
     3421 tttaagatca aacttcaccg gatatcggga ggctaagaaa tcagagaagc actcataacg 
     3481 aagaaaccag aagtcagact catggtaata gaccggtaag ttcttctcga tccaacgacg 
     3541 aaaataagca cgggcattag attgagagcc agcataaacg ttaagaacag aggttcctaa 
     3601 atacagcaca aaataaaaat tttccttcat gactattaac ttttaaatga tatataaaga 
     3661 taataataaa tagttattat aacaaattat aatgattaaa agatgttaaa aaaaagcaaa 
     3721 aaaaaaatcc tcccgctacg cgggaggata aagatactac cgactaacga ccacgaatag 
     3781 atccaatagc attggcaaca acttgaagag tatttaaacc ttcttcataa taacgtttat 
     3841 tataattcca gcggtcaata agagatttaa aggacttaga ttcagcgtca cgccttccgg 
     3901 cttcctgggc tttttggccg aagcccatat tataagccgt ttgcgattca tattgagtac 
     3961 tcatagcagc aatataatca tcagcaaggg caagagcatt acgataatca agattattct 
     4021 tattagccat agagtcatac caagaacctt gcttagagta tagaatctgt ttagcaatgg 
     4081 attccttaca ttgctggtat ttcaaatgtc ctgcggccat cagatcataa tattgggcag 
     4141 ccatcacatt aatacgagtc tgttcagact gatcaagata cttgttcaaa gtacgcttag 
     4201 tattagcaga tagcaacaaa ttcgtacgct cggccatctg aatcaaatta gaccaacgca 
     4261 aattttgaag attctgctta ttggtatcat aatcaagttg agcacgctgt aaaccagtct 
     4321 ctcgcatcca ttttttataa tctggggaaa gttttcccca gtcaacatta gaaaatacct 
     4381 gaagagcttg agcacgtgct acatctgcat ctccttgtaa agccttagta cgagcattag 
     4441 attctcgttc ctggtaaatc atttggccgg ctcgaccaag ttgagaacca agctcggaat 
     4501 aaacttcagg attcaaggag agaggagaag cggcttgagc ttgagaagta ctaccggtag 
     4561 aaccagcaac tccggtattc gaatcataac ccagataagg attatatcca gcttcagcgc 
     4621 gcaatttacg ctgattagca ggagaattat actcattctg tctattccac atctcaagct 
     4681 gaaaatcacg agctttctgg gcttcacgag cattaaaatc attattcatc tgattttgtg 
     4741 caacgttctt attattagca gcagcaccaa atccggcagc accaatagca ccaatagcac 
     4801 caataagagc aggaacaata gctatatcat agccatcact ggacaggaac tgattcagca 
     4861 ccactgacat cagaaccaga agaatcaaat ttagtgcttt cattttcggc agtctgttta 
     4921 agagcttcgg atctcatatc ctcggcaagt tcattaatag aatcaatcca agcaagaatc 
     4981 tcactagggt gttgcaaatg acgagattta accatcgaca acaactcatc atcagaaggg 
     5041 ttcaatttgt ccaattgttc ttgtaaagaa gaagaacggg gactcttaga atccaaaaat 
     5101 cgttgaacgg tagaaacacc ggcacgctta gcaaggtcgg cagcatgaag taacatgctc 
     5161 acatcagagc gaagacgata agaaacagat tcgccaaaag tctctgtctc aaaacgaaat 
     5221 tgttcaacag ggtcaacttc aagagaaatc tcaccaatac gagtagaggg gaaagtagaa 
     5281 atctcacgag taggggtaaa ttcacgaaac ccacatccaa aacaaagttc ttttttctct 
     5341 ttcataatca tataaattta ataaggaaca ccatcacgcg acaatggacg aacaacctta 
     5401 catccaacat aagaattaac caaaaattga tcactctccc aagtagaatc agacttaacg 
     5461 gcaaaaatgt tgtccaaagt attaggatta accttgaaga aaggccaggt gacaaaagaa 
     5521 ccagaagaag gagtaccaaa cgtactatac aggaaagagt catcaacagg agaaacccaa 
     5581 tcctgaagag tcgtagtaaa tgcaccatga atacggtcta tattagactt ccaagcataa 
     5641 taacgaggat tataacctag aatagaatca atctttacag acttattagt cttatacaaa 
     5701 ttggaattaa ccaactgaac aagaggtaca ccttccatac caatattatc gaattcagga 
     5761 ataggaagct catctacaga agtagccaaa agttgaggat gctggccgga aatatcataa 
     5821 tcaagaacag gcatgcaatg gtaaatacac atcaaaatac aatatttgga acctgtagta 
     5881 taacgcatag aaccggttcc agtacccaca cctttaccgt agatgacagc ttcaccatca 
     5941 ccttgcaagt tgttatttac aacctcggaa atatcaagat ttcgagcaat accaccaata 
     6001 tactgcgcca tgtgagaatc agaagcagga acattaacgc caaaatgagc tttaatctgg 
     6061 tcacgataat tggtatcaac agattgagta atttcacgat acttctgcaa agattctgcc 
     6121 tgacgaagag caagaacgtt aaacgaagat tgcagcttat aagaagctgc aggaatgcca 
     6181 acagacaaaa tatcaccagt tgacaaatta cctgaagaat tagtaattga acaattatta 
     6241 ggagaagaaa cttgcgcgcc taccttgata ccaatagtag gacggttgtt agaggataaa 
     6301 gaaatacgag aagcgggaat attaagacct ccttcaatat caattactgc aatatctcca 
     6361 aactgggaat taggaagaac tcccataaat aaatccttat tccagttgca ataacgaaga 
     6421 gaaaataaat tatctcgttt ccaataatcg gaactagcag gaagagaagt atcaatagta 
     6481 ccaccaaata aatttccaga accctggtac cagtcaaaat tataagaagt aggatcagcc 
     6541 ttttcccatt gagaccaacg gaagaaatct tggtaaatct tctgataagt agcaagaggg 
     6601 aaaag 
//
