FEATURES             Location/Qualifiers
     gene            complement(244..2163)
                     /locus_tag="Alpa_01"
     CDS             complement(244..2163)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSKYRIPSDYENQTPRAVHRRVASAYGTIHPGLAVPVHHRHLNVGERIRGRIDSLLQSQPMLGPLMNGYKLITIATFTPDSAIYGWMRNGRRYEPDEYTKFGKVYFPLAGSNIGNYIDPAFQIARRVRRLTFGLDLDANRAKIYESWVSDELNGTGDNGQPTHIGRGGLWDWLGIAPGAVCPNLGAKLSSVAGIRGQLYPPSFKFNAAPFFAYFLSHYYYIANMQENYMYFTRGVGEMQKVRPDGQQESLYRPFFSDVFTSFKPNEFLLYLDTLAYRTREGAQINAMDLKVEGLPINCVQAMACAGIQGYGGLLSVPYSPDLFSNIIKQGSSPSIEITVENDQPNKPDAGFYVAVPELRLKTKLQNWMDRLFVSGGRVGDVFRTLWGAKSSAPYVNKPDFLGVWQASVNPSNVRAMANGSASGEDANLGQLAACIDRYCDFSGHSGIDYYAKEPGTFMLIAMLVPEPAYHQGLHPDLASVSFGDDFNPELNGIGFQSVPRHRFTMMPRGLDDITAHQEKNPWLGYAGTGVTIDPNMASVGEEVAWSWLRTDYPRLHGDFAQNGNYQYWVLARPFTSYFPDAGTGFYGDAESYSTYINPLDWQYVFIDQTLMAGNFAYYGYFDLKVTSSLSANYMPYLGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2163..3104)
                     /locus_tag="Alpa_02"
     CDS             complement(2163..3104)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MIVNRRYKDMTFNEVVDYAETYYGCFWPPDYYLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSKDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGILFDVPQTLIDGYSPDVPGHHPLLASRWKYGFVFVGYVSDETCSYITKYVTKSINGDKVRPRIISSFGIGSNYFDTEESTLHKLGGQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFVNPPVEFSWQGQKFSSKLERDEMRRSTLNQNITSGLTPALPLPHTERVSSFDRFKENMDKNKEFK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:KDS61825.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3101..3373)
                     /locus_tag="Alpa_03"
     CDS             complement(3101..3373)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MASNSWRGLEALITWSDSVTWKTKAGKMPVLVIQYDHFDDFARWKDWVSHVSFPYAYTRAIDDVVTVEVPVEPFFRFTTSPKKWHVNNLR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3393..3575)
                     /locus_tag="Alpa_04"
     CDS             complement(3393..3575)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MEIQKEYIIVVNGRPYFSVVDVEHLSAVIDDAKARFGADSKIEVVMQTTEPYAPGKDNGN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_022044633.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3582..3734)
                     /locus_tag="Alpa_05"
     CDS             complement(3582..3734)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VSAVVAALSAFFLTSCSTSHYVAQSVSSFVQGDTTTTIIKYEQVGSIKKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 32 and 33 "
                     /inference="protein motif:SignalP:4.0"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 18 and 19"
     gene            complement(3751..3894)
                     /locus_tag="Alpa_06"
     CDS             complement(3751..3894)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MEMPEVVIALPNGVKIACTAKSAKYLIIGLGLESLLKDGEVEKPADK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3898..4053)
                     /locus_tag="Alpa_07"
     CDS             complement(3898..4053)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MLDKDLILVVGLAELVAVNEYLRERGDEQVCSVLDGIVKGFRLILCNSKQK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4732..5592)
                     /locus_tag="Alpa_08"
     CDS             complement(4732..5592)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MNKPSRQVAKWRSAGIAPQAVFGNSPGGAGIVTDASTPNSQTPMGSSDFNFVTTIAERQRMKNEKAIADATVNKLNAEAEKLRGDTKDPNVTKDSQRLEFDWNLVKKQREQVQLAVDEINKEFQRAINEADVQIKHGLYSETLAKIDKLIADKDVSEEMKQNLQKQRDLIESQISATQAQTDLIKAQTSATQAQTETENALRDGRIKLTEREANKILADIGLSEARSLNEYESLIKAMTGTQPASSLWGYIDRLIARGDSRLGGYENASDLREKLARALVRYIKAD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.HMPREF9141.0987"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_022044636.1"
                     /inference="similar to AA sequence:INSD:WP_018697176.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ggatcggtaa atacattgac atcaccggac gcaatagatt cagcatcatc aaaagcagcg 
       61 ggcaaaggtt tacgagtaga aataccttgt aaatcaacac caccgttaag atagtaagac 
      121 ataggatgcg caacaacaac cttgtccaca aaaggattat aatcacgaag cgaagaagaa 
      181 tcttttgaga aacaagaagg acaagttatt ttctttttct tatacataac aatcgatatt 
      241 taactaacga ccaagatacg gcatataatt cgctgaaagt gacgaagtaa ccttaagatc 
      301 aaaataaccg taatacgcaa aattaccagc cattaaagtt tgatcaataa aaacatactg 
      361 ccagtcaaga ggattaatat aagtcgaata gctttcagcg tcaccataaa agccggtacc 
      421 agcatccgga aaataagaag taaaaggccg agccaaaacc cagtattgat aattaccatt 
      481 ttgcgcaaaa tcaccatgca aacggggata atcggtacga agccatgacc acgccacctc 
      541 ctcaccaacg gaagccatgt taggatctat agtaacacca gtaccagcat aacccaacca 
      601 aggatttttt tcctgatgcg ctgtaatatc atccagaccg cggggcatca tagtaaaacg 
      661 atgccgtgga accgactgaa aaccaatgcc attcaattcc ggattaaaat catcaccaaa 
      721 ggaaacggaa gccaaatccg ggtgcaaacc ttggtgatac gcgggttcgg gaacaagcat 
      781 agcaataagc ataaaggtac cgggttcctt agcataataa tcaataccag aatgtcccga 
      841 aaaatcgcaa tacctatcaa tacaagccgc aagctgaccc aaatttgcat cctcaccgga 
      901 agccgaaccg ttagccatag cacgaacgtt cgacggattt acagaagcct gccaaacacc 
      961 aagaaaatcg ggcttattaa cataaggcgc cgaagattta gcaccccaaa gagtgcgaaa 
     1021 aacatcgcca acacgaccac cggaaacaaa aagacgatcc atccaattct gaagttttgt 
     1081 cttcaaacga agctccggaa cagcaacgta aaaaccagca tcaggtttat tgggttggtc 
     1141 attttcaacc gtaatttcaa tagaggggga agaaccttgc ttaataatat tactaaacaa 
     1201 atcgggggaa taaggaacag acaaaaggcc gccataacct tgaatgccag cacaagccat 
     1261 agcttggaca caattaatag gaagaccttc taccttgagg tccatagcat tgatttgcgc 
     1321 tccctcacgt gtccggtaag ctaaagtatc taagtacaaa agaaattcgt taggtttaaa 
     1381 agacgtaaaa acatcagaga agaaaggacg atacaatgat tcttgctgac catccggacg 
     1441 aactttctgc atttcaccaa caccacgagt aaaatacata taattttcct gcatgttagc 
     1501 aatataataa taatgcgaaa ggaaataagc gaagaacgga gcagcattaa atttaaaaga 
     1561 gggaggataa agctgaccac gaataccggc gacggacgat agctttgcac ctaaattagg 
     1621 acaaactgca ccgggggcaa taccaagcca atcccaaaga cctccacgac caatatgagt 
     1681 aggctggccg ttatcgccag taccatttaa ttcatcagaa acccaagatt cataaatttt 
     1741 cgcccgattc gcatccaaat ccaaaccaaa agtaagacga cgaacacgac gagcaatctg 
     1801 aaatgcagga tctatataat tacctatatt agaaccagca agcggaaaat aaaccttacc 
     1861 gaactttgtg tattcatcag gttcataacg acgaccgttg cgcatccatc cataaatagc 
     1921 ggaatccggg gtaaaagtag caatagtaat aagcttataa ccattcataa gagggcctaa 
     1981 cataggctga gactgcaaaa gcgaatcaat acgaccgcga atacgttcac caacattcaa 
     2041 atgacgatga tgaaccggaa cagccaaacc cggatgaatg gtgccgtaag cagaagcaac 
     2101 acgacgatgc acagcgcgcg gggtctgatt ttcataatca gacggaatac gatactttga 
     2161 cattatttaa attctttgtt tttatccatg ttttccttaa atctatcaaa agaagaaaca 
     2221 cgttcagtat ggggtagggg aagtgcagga gtaagaccgg aagtaatatt ttgattcaaa 
     2281 gtagaacgac gcatttcatc acgttccagt ttactactaa acttctgacc ttgccagcta 
     2341 aactcaacag gaggattaac aaaacgatca agaacaatat tttgcttatc aacatcagaa 
     2401 aatattttat tataataata ccgtggcata gcctgctgaa aaccattcaa aaccataaaa 
     2461 ggctggtaac gctggccacc taatttatgc aaagtagact cttcggtatc aaaataatta 
     2521 gaaccaatac caaaagaaga aataatacgc gggcgcacct tatcaccatt gatagacttc 
     2581 gtaacatatt tggtaatata cgaacacgtt tcgtcagaaa catatccaac gaaaacaaaa 
     2641 ccgtatttcc aacgagaagc cagtagagga tgatgaccgg gcacatccgg gctatatcca 
     2701 tctatcaaag tttgaggaac atcaaaaaga ataccatgat aatgcgggcg accataaaga 
     2761 gtaccaaact cacaaacaaa ccaatgccga atttgtttac cataatcttt acgaagacga 
     2821 tccaaaaaca atctgacagc cttatttgtg tctttcgaaa acttctttaa gttatcgtca 
     2881 tcaaaggtta gggtaacaaa cagacaagtg ccgggcggat atttgcgaag ctcatacaaa 
     2941 agacgtatac gatattgatt attatacgac ttctgacaag aatgacaata accgcaagga 
     3001 acctctaaat aataatccgg cggccaaaaa caaccgtaat aagtttcagc ataatcaaca 
     3061 acctcattaa atgtcatatc cttataacga cgattgacaa tcatcttagg ttgttcacat 
     3121 gccacttctt aggggaagtc gtaaaccgaa aaaaaggttc aacagggacc tctacagtaa 
     3181 caacatcatc aatagcacga gtataagcat aaggaaagga gacgtgcgac acccagtctt 
     3241 tccagcgggc aaagtcgtca aagtggtcat actgaataac caaaacgggc attttacccg 
     3301 ctttggtttt ccaagtcaca gaatcggacc aagttattaa cgcttcaaga cctcgccacg 
     3361 aattcgaagc cataagacgc tcaaaaatgt ccttagttac cgttatcctt tccgggcgca 
     3421 tacggttcgg tagtctgcat aacgacttcg attttcgaat cagcaccgaa acgtgcctta 
     3481 gcatcatcaa tcacagcaga aagatgctca acatctacaa ccgaaaaata aggacgacca 
     3541 ttcacaacaa taatatactc tttctgaatt tccataataa attacctttt ctttatagag 
     3601 ccaacttgct cgtatttaat aatagtagta gtagtatcac cttgcacaaa gctggaaaca 
     3661 ctttgagcaa cataatgaga agtagagcaa gacgtaagaa aaaacgccga aagagcggca 
     3721 acaaccgcac tcacaagcgt ccaaaatttc ttacttgtca gcaggttttt caacttctcc 
     3781 atctttcaga agtgattcca aaccaagacc aataataaga tacttagcag atttagcagt 
     3841 acacgcaatc ttaactccat taggaagagc gattacaact tcgggcattt ccataattta 
     3901 cttttgtttt gaattacaca atataagccg aaaaccttta acaataccat caagcacact 
     3961 acaaacttgc tcatcaccac gttcacgaag atattcgtta acggcaacaa gctctgcaag 
     4021 accaaccact aaaataagat ccttgtctaa cataatatta ttataaattc cgtttcaaaa 
     4081 gtgcttatgc acagtgtatc aagtggctat actctcctat aatttaacat aatggtaata 
     4141 gtactgattg ccagtaagtt aagcaatagg ataggggagt atcttgccac agaaaagagg 
     4201 gttaataaaa ggtggcaaga cgtcaaagaa cgagtagtag agaactacag cgcaaatata 
     4261 caaataatat ttacaagtcc aaaaaaaagt gaaaatttta caattatatc cgaatatgaa 
     4321 tttcgcgcgc acgcgtgaaa gcacacgtac gcacgttaca tatcggaaac gttccgtatc 
     4381 ttgggtcatc aagatacttc actataagga agttaattaa acgaagcagt ccggcacgcc 
     4441 attgcttcgg gttattgagt gaacccaaag caaaggcggc cgaacgatca gaacgtaacg 
     4501 cggctataaa aagatgataa cgcattaaag atcaataatt tacatttgta aattacattt 
     4561 tgtaagttac gcatgtaaaa aaaaggcccg gaaaattccg agccttacac tacttacgag 
     4621 aagacaactt acaaacgcat ttccagataa accagaaaat gaacgcaaaa aaagcgagaa 
     4681 ctaaaagttc acaaaaaccg atatgtccca aaaataaaaa catacacaaa attaatcagc 
     4741 ctttatgtat ctaacaagag cacgagcaag tttttcacgc aaatcgctcg cattctcata 
     4801 accaccgaga cgagaatcac cgcgggcaat cagacgatca atataacccc aaagagaaga 
     4861 tgcgggttga gttccggtca tagccttaat aagcgattca tactcattaa gcgaacgagc 
     4921 ctccgacaaa ccaatatcgg caagaatctt attcgcttcg cgttctgtaa gcttaatacg 
     4981 accatcacga agagcgttct ccgtttcagt ttgagcctgc gtagcggaag tctgggcctt 
     5041 aataagatca gtctgggctt gagtagcaga aatctgcgat tcaatcaaat cacgctgttt 
     5101 ctgcaaattc tgcttcattt cctccgaaac atccttgtca gcaattaact tgtcgatttt 
     5161 cgccaaggtt tcagaataaa gaccatgttt aatttgcaca tcagcttcat taatagcacg 
     5221 ctggaactct ttgttaattt catcaacagc aagctgaacc tgctcacgct gtttcttaac 
     5281 aagattccaa tcgaattcaa gacgttgcga atccttggta acattcggat ctttcgtatc 
     5341 gccacgaagt ttctcagctt cggcgttcag cttattaaca gtagcatcag caattgcctt 
     5401 ctcgtttttc atacgctgac gctcggcaat agtagtaaca aaattaaaat cactggaacc 
     5461 cataggagtt tgagaattcg gagttgaagc atcagtaaca ataccagcac cgccgggaga 
     5521 attaccaaag acagcttgag gagctatacc agcggaacgc catttagcaa cttgacgaga 
     5581 aggtttattc atctcttcaa gttgattaac gcg 
//
