FEATURES             Location/Qualifiers
     gene            complement(21..1964)
                     /locus_tag="Alpa_01"
     CDS             complement(21..1964)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MGKQPFISHSVNGYSRYDMPESKAFSITPGIIYPVRIQFVNARDRVTLHQGIDIRSNPLGVPSFNPYVLRLHRFWVPLQLYHPELRVNSSKFDMNNLTYNFIPGVVDCAGAGSYTSCMYPRSGTAAFFSQVMPFNHRAALPNSLMSWLRIANSPIFCYSGKPLPVSTCLLKTAPKFLSVNADTYLGYWDIVRNYYSYSSWGVFSFAHPGTYRPVFYTTPTSSVTKVEYRSQASYFWQRYGNLEFLDHYFETMFYPRDRKTPDDRDELSWNRSDLFVEILRSDLFNEDTIAASPDFTNLVQLFPQGINCRVPAHPYDVQEPKVDWNNGTGTDVNIPSKVYFSATLNVPFLAAHPMAVCPSSPDRFSRLMPPGDSNSDVDFTGVKTIPQLAVATRLQEYKDLIGASGSRYSDWLYTFFASKIEHVDRPKLLFSSSVMVNSQVVLNQAGQSGFEGGESAALGQMGGSISFNTVLGREQTYYFKEPGYIFDMMTIRPVYFWTGIRPDYLEYRGPDYFNPIYNDIGYQDVPLWRLGYGWKADTVSSLSVAKEPCYNEFRSSYDEVLGSLQATLTPKASTPLQSYWVQQRDFYLIGLSSNPNEVSPSMLFTNLNTVNNPFASDMEDNFFVNMSYKVVVKNLINKSFATRLSSR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1957..2961)
                     /locus_tag="Alpa_02"
     CDS             complement(1957..2961)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MNRPWDYFTQRIMVPCGRCEECLRQQRNDWYVRLERETKYQKSLHRNSVFVTITIAPEYYDSALLNPSSFIRMWFERIRRCFGHSIKHAVFQEFGMHPEQGNEPRLHFHGVLWDVSYSYNAIREAVKDLGFVWISSITDKRLRYVVKYVGKSVYMDDSSAVFAKSLPITVGKLNTNLYDFLQNRKYRRKFVSPGVGDYLGDFKAPGVTSGLWSYTDYRTGVVYRYRIPRYYDKYLSQDALFFRKISTAWTYACVFGSSLALGFLREVAQRVLRPSSFSRIVKGGFSRLVKLREFLSKVKFSQRFIAVVPDVIDFWVDCFGVNSSNPFFNKIVYG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3002..3214)
                     /locus_tag="Alpa_03"
     CDS             complement(3002..3214)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MSFDYFHRFELAYSPFFVRKRVGKRFTVIFRFRTYEQASDCLRFLLENYPGIYFDIKDVSFSHLDKKSSL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3266..3673)
                     /locus_tag="Alpa_04"
     CDS             complement(3266..3673)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MLSNVISEDTQKSSVSGSDSIISVLISNYPLANGGYLVSFGHDEPDGSFKNYDPVYSLDFESSKLSKFLEFSSIFLPRGCYYLPEMELAGFIRSLSSDVSFFEMKLLPASAQLQGLLLVKVDEESLSKYEQEEED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3736..5001)
                     /locus_tag="Alpa_05"
     CDS             complement(3736..5001)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MPAAPFLALMGQSLGMNAASSAGSSAGAGIADALFGGISARRNWKYKQKEMALQQQYALEQMSKSAEFQLAHDKQMFDYQNSYNDPAAVLERNFSAGLNPAAVLGQSGVGVSATIPTSSGGAPSGHGPVASGSGGGLAALAGNPSAYADVQLKDAQQERERSAASLNDAEADWYRSQTLDKDLRERLMKAQAGLAEAGITESASRASLNAAITLSYSIDNELKDAAFGYNLEMIKANLGKAKEEYYQLKARTGYIDELIEKELQLLTVRAIYLKSSASNQEQLARVNELTADDLENWFDVNWNTQVDVPIIDEKGKVERIVRMTGKEIRKEYMKLDLQDFQYDMYTNRWALRSEKNRFGYSIVNTAVNGAISAAGHVVGAKVLSTAPPVQRIEDVTEDLTSSPDGSGWTKHTTTTSRQFRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 33 and 34 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5003..5203)
                     /locus_tag="Alpa_06"
     CDS             complement(5003..5203)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MVSYCCFVMEKVPFYRKKSFWTLLISILTALSVYFAASCSRKVFYRSSGIHCDTVEVDVRSNLKLP"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 caatcatata ctccaacata tcaacgacta gataaacgag ttgcaaaaga cttattaata 
       61 agattcttaa caactacttt gtacgacata ttaacaaaaa aattatcctc catatccgat 
      121 gcaaaaggat tattaacagt attcagatta gtaaaaagca tagaaggact aacctcattc 
      181 ggatttgacg acaaacctat cagataaaaa tcacgctgct gcacccaata agactgaagc 
      241 ggagtagaag ccttaggagt taaagtagcc tgcaaagaac ctaaaacctc atcataagaa 
      301 gaccggaatt cattataaca aggctcttta gctactgaca aactagaaac agtatcagcc 
      361 ttccaaccat aaccaagacg ccataaagga acatcttgat aaccaatatc attataaatc 
      421 ggattaaaat aatcgggacc acgatactcc aaataatcag gacgtatacc cgtccaaaaa 
      481 taaacaggtc gaatagtcat catatcaaag atataaccgg gctccttaaa ataataagtt 
      541 tgttcgcgtc caagcacagt attaaacgaa atggaaccac ccatctggcc aagtgcagca 
      601 gattcaccac cttcaaaacc agactggcca gcctgattca aaacaacctg gctgttaacc 
      661 ataacggaag aactaaaaag aagcttcgga cggtccacat gttcaatctt agaagcaaag 
      721 aacgtataaa gccaatcaga ataacgagaa ccggaagcac cgataaggtc tttatactcc 
      781 tgcaaacgtg tcgcaacagc aagctgcggg atagtcttta cacctgtaaa atcaacatca 
      841 gaattagaat cacccggcgg catgagacga ctgaaacggt cgggagaact cggacacaca 
      901 gccataggat gcgctgccaa aaaaggaacg ttcaacgtgg cagaaaaata aactttagaa 
      961 ggaatattaa catcggtacc tgtaccatta ttccaatcaa ccttaggttc ctgaacatca 
     1021 taaggatgag ccggaactct acaattaata ccctgcggaa acaactgcac caaattcgta 
     1081 aaatccggag aagcagcaat agtatcctca ttaaacaaat cagaacgaag aatttctaca 
     1141 aacaaatcag aacggttcca agacaactca tctctatcat caggagtttt cctatccctc 
     1201 ggataaaaca tcgtttcaaa ataatggtcc aaaaactcta aattaccata acgctgccaa 
     1261 aaataagaag cttgcgaacg atactcaacc ttcgtcacag aagaggtagg agtagtataa 
     1321 aaaacaggcc gataagttcc gggatgagca aaagaaaaaa caccccaaga agaatacgaa 
     1381 taataattgc gaacaatatc ccaataacct aaataagtat ctgcattcac agaaagaaac 
     1441 ttaggcgccg tcttaagcaa acatgtacta acaggcaaag gtttaccaga ataacaaaaa 
     1501 atcggactat tagcaatacg aagccaagac atcagactat taggaagtgc agcacgatga 
     1561 ttaaacggca tgacctgact gaaaaaagca gcagtaccgg aacgcggata catacaagaa 
     1621 gtataacttc cagcacctgc acaatctaca acaccaggaa taaagttata cgtcaaatta 
     1681 ttcatatcga acttagacga attaacacgc aattccggat gatacaactg caaaggaacc 
     1741 cagaaccgat gcaaccgaag cacatagggg ttgaacgatg gaacacccaa aggatttgaa 
     1801 cggatatcaa taccttgatg caaagtaact cgatcacgtg cattgacaaa ctgaatacgc 
     1861 accggataaa taataccagg cgtaatagaa aaagccttac tctcaggcat atcataccga 
     1921 gaataaccgt tcacggaatg agaaataaaa ggctgcttac ccataaacta ttttattaaa 
     1981 aaaaggatta gaagaattaa caccaaaaca atctacccaa aaatcaataa catcaggaac 
     2041 tacagcaata aaccgctgcg aaaacttaac cttactcaaa aactcccgaa gcttcacaag 
     2101 gcgcgaaaaa cctcctttaa cgatacggga aaaggaagag ggacgaagga cccgttgagc 
     2161 aacttcacga agaaagccaa gagccaaaga actaccgaaa acacaagcat aggtccaagc 
     2221 agtagaaatc ttacgaaaaa atagcgcatc ttgagaaaga tacttatcgt agtagcgagg 
     2281 gatacggtaa cgataaacaa caccggtcct ataatctgtg taagaccata gaccagaagt 
     2341 aacaccggga gctttaaaat cgcccaaata atcaccaaca cctggcgaaa caaatttacg 
     2401 acgatattta cgattctgaa gaaagtcata aagattagta tttaatttac ctacagtaat 
     2461 aggaagagac ttcgcaaaaa cagcagaact atcatccata taaacagact taccgacata 
     2521 cttgacaaca taccgaagac gcttatccgt aatagatgaa atccaaacaa aacctaaatc 
     2581 cttaactgct tcacgaatag cattataaga ataagaaaca tcccaaagaa cgccatggaa 
     2641 atgaagacga ggctcattgc cttgctcagg atgcattcca aattcttgaa aaacagcatg 
     2701 tttaatggaa tgaccaaaac agcggcgaat acgctcaaac cacatgcgga taaaagaaga 
     2761 aggattcagc aatgcactat cgtaatactc cggggctatc gtaatcgtaa caaagacaga 
     2821 gttacgatgc aaacttttct gatacttggt ttcacgctcc aaacgaacat accaatcatt 
     2881 gcgctgctgc cgcaaacact cctcacaacg accacagggg accataatac gttgagtaaa 
     2941 ataatcccaa ggacgattca tcaacaaaac attcctatct gtcaaactaa tagtccgtga 
     3001 actataagct cgatttctta tccaaatggg agaaagacac atcctttata tcaaaataaa 
     3061 taccgggata attttctaac aaaaaacgga gacaatcaga agcttgctca taagttcgaa 
     3121 aacgaaaaat tacagtaaaa cgcttgccta cacgcttcct cacaaagaat ggcgaatagg 
     3181 caagctcaaa acgatgaaag taatcaaaac tcatagaacc tttcctccta aaggacgtac 
     3241 aacgattcgt gaacctcctt tacctctagt cttcttcttc ctgctcatac ttagacaaac 
     3301 tttcttcatc aactttaacc aagagcaaac cttgcaactg agcagaagca ggcaaaagct 
     3361 tcatttcaaa aaaagataca tccgaagaca aagaacgaat gaaacctgca agctccatct 
     3421 caggcaaata ataacatcct ctaggcaaga aaatagagct gaattccaaa aatttagaaa 
     3481 gcttagagga ttcaaaatcc aaagaataaa ccgggtcata gttcttaaaa gagccatcag 
     3541 gttcatcatg accaaaggaa accaaataac ctccattagc aagaggataa tttgaaatca 
     3601 acaccgaaat aatcgaatca gagccagaaa cagaagactt ctgcgtgtcc tcactaataa 
     3661 catttgataa cataatagaa taagatttaa agttcaaagg caaagataaa cataaaaaaa 
     3721 ttaaattaca aatttttaac gacgaaattg acgactagtt gtagtagtat gcttagtcca 
     3781 acctgaacca tcaggactag aagttaaatc ctcagtaaca tcctcaattc tttgcacagg 
     3841 aggagctgta gaaagaactt tggctccgac aacatgtcca gcagcagaaa tagctccatt 
     3901 aacagcagta ttaacaatac tatagccgaa tcgattcttc tcagagcgaa gagcccaacg 
     3961 attagtatac atatcatatt gaaaatcctg caaatcaagt ttcatatatt ctttgcgaat 
     4021 ttccttgccg gtcatcctga caatacgctc aacctttcct ttctcgtcga taataggaac 
     4081 atcaacctgc gtattccaat tcacatcaaa ccagttctcc aaatcatctg ccgtcaattc 
     4141 attcacacgg gccaactgct cctgattaga agcagaagac ttcaaataaa tagcccggac 
     4201 agtcaacaac tgcaattctt tttcaatcaa ctcatcaata taaccagtac gagccttaag 
     4261 ctggtaatac tcctccttag ccttaccaag attagcctta atcatctcaa gattataacc 
     4321 gaaagcagca tctttcaact cattatcaat agaataggac aaagttatgg cagcattcaa 
     4381 acttgcacgc gaagcagatt cagtgattcc tgcttcagca agtcctgctt gagccttcat 
     4441 aagacgttca cgcaaatctt tatccaaagt ctgggaccta taccaatcag cctcagcatc 
     4501 attaagagaa gccgccgaac gctcacgctc ctgctgagca tctttcaact gaacatccgc 
     4561 atacgcagaa ggattcccag ccagagcagc aagaccacca ccggaaccag aagcaacagg 
     4621 accatgtcca gagggagcac caccactgga agtaggaata gtagcagaaa caccaactcc 
     4681 agactggcca agaacagcag caggattcaa accagcagaa aaattacgct caagaacagc 
     4741 agcaggatca ttatacgaat tctgataatc aaacatctgc ttgtcatggg ccaactgaaa 
     4801 ttccgcagac ttagacattt gttcgagggc atactgctgc tgcaatgcca tttccttctg 
     4861 cttatacttc caattacgac gagcagaaat accaccgaac aaagcatcag caataccggc 
     4921 accagcagaa gaacctgcag aactggctgc attcatgcct aacgactggc ccatcagagc 
     4981 aagaaaagga gcagcaggca tactacggaa gctttaaatt agaccgaaca tcaacttcaa 
     5041 ccgtatcgca atgaatacca gaagaacgat aaaaaacctt ccgagaacat gaagctgcaa 
     5101 aataaacaga taaagcagta agaatggaaa tcaacagtgt ccaaaaactt ttcttacgat 
     5161 aaaacggtac tttttccata acaaaacaac aataagaaac cataagaaaa tacgctatca 
     5221 aaaccgcaat ttgatatcca aatttgatgt tcaaagcaaa catcaaaatc ggtccgcgca 
     5281 catatcatat atcatctagt aaagggatat gtaattttct tttaaaaata ataaatttat 
     5341 acgggcagca cgccgactcc gtcgacataa agtgctgatt accaaagtgc taaacgctac 
     5401 ctgcggtgcg aggcaggaaa gtggacaagg gaccgaaggg aatacctaaa tactcccttc 
     5461 gagaacccta aacctcatta atcatctttc tccgacttag cgctcgaaga cgaacg 
//
