FEATURES             Location/Qualifiers
     gene            complement(38..652)
                     /locus_tag="Alpa_01"
     CDS             complement(38..652)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSKRVSHARTHFTGNKTGLVSVVSPDFLKSENFCWVGHIFRRSHNLSLINASLAKMGKFRIVEVGELLTSPESLNSLRIAVIIPNDKQAKEVTVFRERFNKIVVDVTSTGFCAKITKVILRSLCVICNLRHGDRNSISTEVFRALQPSIRRTNAKQAKQQLSIPRTIASHRLEKTLIRERQAQFVHSERCINVITRTSSRNSSG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            620..850
                     /locus_tag="Alpa_02"
     CDS             620..850
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MRPGVTNSLAHWHLADHYAKVPTLSDGWIREDKANVDRVLAVQSSVADQFWCDLWISNMCTRPMPMYSIPGSLDHF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65928.1"
                     /inference="similar to AA sequence:INSD:CDL66947.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            906..1628
                     /locus_tag="Alpa_03"
     CDS             906..1628
                     /product="_structural_protein_[Chlamydia_phage_2]"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MGFFDSLGSNSDFWQAADDIYQSSGMNQFYGQSSAISAKKDASIASRYPGANNPSAIINAVIGHDRDVSTSGKGTFYDEAQKEKSPAGPSFYELTRDRPSSSSQPQTYDYLDAPWASAYGMSKETAYSEAMENTAYRRSVSDMQKAGLNPAVIFGAGRGSTAGSPSYISSGSSGSSGRGSRRGSGSGRSNGKLFSGSAYSVLSALGGIVGAAATKSAGGYWLGTSLAQGAMSALNLFSKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="2 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:NP_054650.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2223..3488
                     /locus_tag="Alpa_04"
     CDS             2223..3488
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VIFMACFHPNHVVVRDGQFQFLGSAAYLKSGDLFYDNPVSFHTLVPCGRCMGCRLDRSRVWADRMLLELKDNDYKALFVTLTYNDRSLPSAWHVGSNYFDGFYEDVVPLVLDDDEEWIAAAAGAPATLSIRDTQLFMKRLRKTFRDRRLRFFLAGEYGPKTHRPHYHAIIYGLTLSDFKDCRIKDFNKLGQPRYISKSFERIWGNGYCVLAPVNWNTCAYVSRYTMKKVYKSENSHAYASGQLPPFCTMSRRPGIGLLHADDLLKKGDKTFIRDIDLNGKECTREVYLGRAFIRSAAREHMKPVFAAADLVESVQTCINELEAESCTEHEDVLDALYICLRAFRHRLDDVIELHIPPSVRLCSRQNERAYNSIQRSISNLAVFGGYLLEYYQGKELHFLQRIKLLPERGDLFEQTSTCKPG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:CDL65906.1"
                     /inference="similar to AA sequence:INSD:CDL66943.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bactNOG166725"
                     /db_xref="eggNOG:bctoNOG24068"
                     /db_xref="eggNOG:NOG117857"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3702..3980
                     /locus_tag="Alpa_05"
     CDS             3702..3980
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MQNMYVIRDEVSYETGDLFCLANDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRLALRVSALMNVGDSVEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3970..4461
                     /locus_tag="Alpa_06"
     CDS             3970..4461
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="LRNKEARIPNISSIYTASGSPIHRILEPRFDGVNTCLVVTGEENIQDRMEAEAPSTDINYMLHRLSLGDTSVLSSKRPMYGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSSVVPNSDVEKEGADSVVEKDSGGSN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP3"
                     /inference="similar to AA sequence:INSD:CDL65903.1"
                     /inference="similar to AA sequence:INSD:CDL65858.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tattacttat gctagaaatg tttggtcgcc tattaattta tccactacta ttcctgctgc 
       61 tggttctggt gatgacgttg atgcatcttt cactgtgaac gaactgcgct tggcgttcgc 
      121 gtatcagcgt tttctcgagt ctatggctcg caatggttct cggtatactg agctgttgct 
      181 tggcctgttt ggcgttcgtt ctcctgatgc tcggctgcag cgccctgaat acctcggtgg 
      241 aaatagaatt cctatctccg tgtctgaggt tacaaataac gcacaaactc ctgaggatta 
      301 ccttggtgat cttggcgcaa aatccagtac tggtgacgtc aaccacgatt ttattaaatc 
      361 gttcacggaa cacggttacc tctttggctt gtttgtcgtt cggtatgatc acagctattc 
      421 tcaaggaatt gagcgattct ggactcgtaa gaagttcacc gacttctaca atccgaaatt 
      481 tgcccatctt ggcgagactg gcgtttatca ggctgagatt atggctacgc ctgaaaatat 
      541 ggccgaccca acaaaagttt tcggatttca ggaaatctgg gctgactaca gatacaagcc 
      601 cagtcttgtt accggtgaaa tgcgtcctgg cgtgactaac tctcttgctc attggcatct 
      661 tgccgaccat tatgcaaaag ttcctacttt gtcagatggt tggattcgtg aagataaggc 
      721 taacgttgat cgcgtgcttg ctgtgcaatc ttccgttgca gaccagtttt ggtgtgatct 
      781 ctggatttcg aacatgtgca caaggcctat gcctatgtat tctattcctg gttcgcttga 
      841 tcatttctaa tccctcaggc gcgccctgtt tgagggcgcg ccttacgttt tgaaaggatg 
      901 tttttatggg cttttttgat tctttaggct ccaattctga tttttggcag gctgctgatg 
      961 atatttacca gtcttctggt atgaatcagt tttacggtca aagttctgct atttctgcaa 
     1021 aaaaggatgc ttctattgct tctcgttacc ccggtgcaaa taatcccagt gccattatta 
     1081 atgctgttat tggccatgat cgtgatgttt ctacatctgg caagggaact ttttatgacg 
     1141 aagcccagaa ggaaaaatcg cctgctggtc cttcttttta tgagctcacc agagatcgcc 
     1201 ctagttcttc ttctcaacct cagacttacg attatcttga cgccccttgg gcttccgctt 
     1261 atggtatgtc taaagaaact gcttattcag aagctatgga gaacaccgct tatcgtcgtt 
     1321 ctgtttctga tatgcagaaa gccggcctga atcccgccgt catctttggc gctggccgtg 
     1381 gttctactgc tggttctcct tcttatatta gctccggctc gtctggttct tctggccgtg 
     1441 gttctcgtcg tggctctggt agcggtcgtt caaatggcaa gttgttttca ggctctgctt 
     1501 actctgtctt gtctgctctt ggcggtattg ttggcgctgc tgccaccaaa tctgctggtg 
     1561 gctattggct cggtacttct ttggcgcaag gcgctatgtc tgctttaaat ttgttcagca 
     1621 aaaggtaatt tctgcccggc ttggaatata gccgggcttt ttctatgccc gcaggcatgc 
     1681 tagcaacggc atgcagaaat tgggatgctt atgtgttctc ttgcggtact ttccgcactt 
     1741 ttcagcgtgt tgcaccctga ccagctcatg acttttgctt gtttccggcg cgtgctgctg 
     1801 tgtttgttcc ctgagtgctt caatcgcgcc ttgatcacat tgtgcaggca cttcgttttt 
     1861 ttgctatctt atctcgcgtc tagcgacggt atgcatttcc gtcttctgag taatcggccg 
     1921 ccctgaaggc ggccgcagcg acagcccctt gaggggcgca ggcgcaaggg gtgactgttt 
     1981 tccagttata tattttattc ttcttttttt ctggttcttc aattgcgaca ccccggtatt 
     2041 tccgggtcct cggtgtcgtt tcctccattt ggagttatag actttttaag tcgttagccg 
     2101 cgaaagcggt ggacacgttt ccctacttga tttataatgt gtccactgac accacagttt 
     2161 acccggtgtc agctaaaaga aatgcttgac atttcgatgt atgtatgtta ctatccttgt 
     2221 aggtgatttt tatggcttgt tttcatccta atcatgttgt tgttcgtgat ggccagtttc 
     2281 agtttctcgg aagtgctgct tatctgaaat ctggtgattt gttttatgac aatcccgttt 
     2341 cttttcatac tcttgtgcct tgtggtcgtt gcatgggctg tcgtcttgac cgttcccgtg 
     2401 tttgggctga tagaatgctt cttgaactga aggacaatga ctataaagct ctctttgtca 
     2461 ccctgacata caatgatcgt tctttgcctt ctgcttggca tgttggctct aactacttcg 
     2521 atggttttta tgaagatgtt gttcctcttg tacttgatga tgatgaggaa tggattgcag 
     2581 ccgctgctgg cgctcctgct actttgtcta tccgtgatac tcaactcttt atgaagcgtc 
     2641 tccgtaaaac tttccgtgat cgtcgcttgc ggttctttct tgcaggtgaa tatggcccga 
     2701 agacgcatag accacattat catgctatta tctacggttt aactctttct gattttaagg 
     2761 actgccgcat aaaggatttt aataagcttg gccagcctcg ttatatttcc aaatcctttg 
     2821 aaaggatttg gggaaatggc tattgtgttc ttgctcctgt gaactggaat acatgcgctt 
     2881 atgtttctag gtataccatg aaaaaggttt ataaaagtga aaattctcat gcgtatgctt 
     2941 ccggtcagct ccccccattt tgtactatgt cccgccgtcc tggcattggt cttcttcacg 
     3001 ctgatgatct tcttaaaaaa ggtgataaaa cgtttattcg tgatattgac cttaacggta 
     3061 aagaatgtac tcgtgaagtt tatttaggtc gtgctttcat tcgttctgct gctcgtgaac 
     3121 acatgaagcc tgttttcgct gctgctgatc ttgttgaatc tgttcagact tgcattaatg 
     3181 agttggaagc tgagtcttgc acagaacatg aagatgtact tgatgctttg tatatttgcc 
     3241 ttcgtgcttt tcgtcatcgt cttgatgacg ttatagagct tcacattcct ccttctgttc 
     3301 gtttatgttc gcgtcaaaat gagcgtgcat ataatagcat tcagcgtagc atttcaaatt 
     3361 tggcagtttt tggaggctat ttgctggaat attaccaagg aaaggagcta cattttctac 
     3421 aacgtattaa gttactgcca gaaagaggtg atctttttga gcaaacgtcg acctgcaaac 
     3481 ccggctaagg ataaaaaaat ctttacccgg acagctgcca aggtgaaatc tattaatctt 
     3541 ggtgttaaaa atttcagagg aggcataagg ctttgaaact ttttgttagt tttgttgatg 
     3601 atgatgatga ttttgttctt tttgagtcgg aagatgttct gtttgacgac tattttgaaa 
     3661 tgacctttgt cgttgatctt gattctgagg aggatattta aatgcaaaat atgtatgtaa 
     3721 ttcgtgacga ggtttcatat gagactggtg atctattttg tcttgcaaac gatgctgttc 
     3781 tctctcgaag tatggtttct gttgttgatt ccgtggagga tgcagatgtt ctttctcgca 
     3841 tgcgtgattc cgttgtttat caggttgcga ccgtttcttc tgatgttgat ggatttccta 
     3901 ttgtcgaagc tttgcctcgc cctcgcctcg ctcttcgtgt gagtgctctt atgaacgtag 
     3961 gtgattctgt tgaggaataa agaagcgcgc attcctaata tttcttctat ttacaccgcg 
     4021 tctggttctc cgattcatag aattcttgaa cctcggtttg atggcgttaa tacgtgtctt 
     4081 gttgtcactg gtgaagaaaa tattcaagat cgtatggaag cagaggcacc atccactgat 
     4141 attaattata tgcttcatcg gctctctctt ggtgatacgt cggttctgtc ttcgaaacgt 
     4201 cctatgtatg gcgactttac cggcctccct tctgacccta tagaagcgct gaatcttgtt 
     4261 catcagagtg aatatgcatt tgctcagcta tctgctgatg ataaagcaaa atacaacaac 
     4321 gattggcgcc gctggttcgc tgatctgctg tctggccgtg acaatttatc tgaaaagttg 
     4381 tcttctgttg tacctaattc tgacgttgaa aaggaaggag ctgattctgt tgttgaaaaa 
     4441 gactctggag gctctaatta gcttcttgtc tgagtttgtg atcgctcatc ctcgtgtggt 
     4501 ttgttccatt attggcgttc tcggtgctct tgccttgatt gctgctgttg tttctatcaa 
     4561 tattcttttg gaggtgtaat tcttgaatcg caacgtggag tcgcattttg cacagcttcc 
     4621 tgctgctgaa attcagcgtt caacatttga tcgctcccat ggttataaga cttctttctg 
     4681 tgccggtgat atcattcctt ttatggttga tgaagtgctt cccggtgata gtttcaacat 
     4741 ttccacttca aaagtggttc gttctcagac aatgcttact cctattatgg ataacatgtt 
     4801 cttagacact tattattttt tcgttccaaa tcgtttggtt tggaagcatt ggcgcgaatt 
     4861 ttgtggtgaa aacagagaag gcgcttgggc gcctactgtg gaatacactg ttccttctat 
     4921 tgcgccgccc cctggcggtt ttgctaaagg caccattgcc gactatatgg gtcttcctat 
     4981 cggtgttgaa tggaaagcta cagatcctct tgcgccgtct gctctgccct tccgtggata 
     5041 tgcgttgata tgcaatgaat ttttccgcga tgagaacttg acagacccgc tgttgatttc 
     5101 ccttgatgat gctaatcagc aaggcagtaa cggtgatgat tacgcaaacg atgttgcaaa 
     5161 cggtggtaaa cctttcaaag ctgctcgcat gcatgattat ttttcaagtt gtcttccttc 
     5221 cagtcagaaa ggttcttctg tcggtattcc catccatgta cccggttttg ctggtggtac 
     5281 tttccctgtg actactaccg ataactggac ggttcctgct tctgctgttc cggccgtg 
//
