FEATURES             Location/Qualifiers
     gene            complement(980..1867)
                     /locus_tag="Alpa_01"
     CDS             complement(980..1867)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MASWAGALQGIAGQNTSSSAKQAEELRTWQEQQAELARKYNSQEAQKNRDWQERMSSTAHQREVRDLIAAGLNPVLSVTGGSGAAVTSGATASSSAPSGAMGSVDNSATGAVAGLFGSLLSSFLSLEGTRVSAQSNQAIADKYTAMSKYTSELQAQTQLTSTNIQAMAQKYTADAHLAGTKYAADQSAAAQKVSASIHAAAQKYGYNVQSMTQRDIAAFNAQVNKDLQKAGFKQEFDIKKAFPNNAWNVFGGLGTQAVEDIQNANLPWGKNIFDFFANVLPGAISGKDASKRKKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:CDL65860.1"
                     /inference="similar to AA sequence:INSD:CDL66940.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2959..3690
                     /locus_tag="Alpa_03"
     CDS             2959..3690
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MVNAIGQSHNGEITTLSNRNSHVRALLGSRQRRSEVVVELGGLEGHTAFDNIGDIVGAVRTCKGSIIHGDVEGVGEVFITEPLIHDEGVGTEGESVNGEVGNTSRDAHVVGNGANRPATRGRSHLGHGILHGRNPGGLSVLTHELTPMLPYDTVGHEVKIGVQVEIIHHRGEQSLQAGNHGCLHLESITGKNFIHIEGDNVSDIETEFNTMVTPKSATSNIKVSRIKSKSCIFITRQVNTSSQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1981..2985)
                     /locus_tag="Alpa_02"
     CDS             complement(1981..2985)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VTLADRVDHSQFKAPMSAWISGPQPNKDYSSVIQTWNFGSNLGGTDVESVATGVGFDAPTSRDGSMYLDNLWAIQSGNVTAATINQLRMAFQIQKLYEKDARGGTRYIEILKSHFGVTSPDARLQRPEYLGGNRIPVNINQVVQSSATQSSGTPLGDTAAFSVTTDVHGDFIKSFVEHGFVIGIMVARYDHTYQQGLERFWSRRDRLDYYFPVFANIGEQPILNKEIYAQGTVQDNEVFGYQEAWADYRYKPSRVAGEMRSKAPTSLDVWHLADEYTQLPKLSDAWIREDKTNVDRVLAVTSAVSNQMFADLYIQCKATRPMPMYSIPGLIDHH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65928.1"
                     /inference="similar to AA sequence:INSD:CDL65904.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3812..4564)
                     /locus_tag="Alpa_04"
     CDS             complement(3812..4564)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VTCVLVFSASPPNRMTISPPAISPTLSWNPMVCFLLTLPIFSFSASVSSIPIRVFSFRRSFMSSFPTARRFSALCRRRMPMFETWHREQQHFCSEPGCGEKILYSPEFDRFGVMTLKESGKEDLYAFIQSHKDSVDLHKIMDRFNAGDASALQKVQGMFGDFSEMPQTYAGLLNHMIEAEQTFMSLPLETREKFGQSFHAWLAQAGSVSWLEAMGMVTPPTSQNSAGEPPAAPQSPEGGETDPAPASPAG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="similar to AA sequence:MV_prot:putative.VP3"
                     /inference="similar to AA sequence:INSD:CDL66946.1"
                     /inference="similar to AA sequence:INSD:CDL65858.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4579..4776)
                     /locus_tag="Alpa_05"
     CDS             complement(4579..4776)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MDISQTMEIIDQVYQDMFVETVLKFEVLEKSVDVGSAGRMAHQERLDGMRKLYTKLIKELYQYDA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cttgcgacca ccatcgggag tggaaatgga gatagtgtca tactccatac attcgggatg 
       61 atcgtcatac cactggcggc caataccagg gcggcgggac atgtcgacat actctgggtc 
      121 gatgttaaac gtctggtaga catcggcctc agggccagag gctttcttga ggacgtaccg 
      181 ggcgacataa gcgcatgtct cccaattaac ttgaccaacc aagacatagc cgataggctt 
      241 ccgggtgcaa ggggtgtcat actccccttt ctgttctacc acagaccagg ctttttgtaa 
      301 agcctccgag taaaaatact gatatccgac atcaccacgt cggatatctt gcacgggcat 
      361 caagtcatgc aagtggagtc caaaaactat tgcatgataa tggggccgga aggtggtaga 
      421 gccatactca ccacaagcga aatagcgaat gtggtcatcg gggaaagctt tgcgaagacg 
      481 cttccagaac aactgtaaat ctcttttaca caatgaaagg gactgcatcg cctctccggt 
      541 ctccggatca gcataccaat ggcgggggac atgctcctca tcataagtca gagtcaggaa 
      601 ataagccgag tcgtgatact caagttccat catacaacgg ttggcccatt cacgagagcg 
      661 ggcaatccgg caaccttcac acttgccgca ggggatttca acccaatcga gccaagcctt 
      721 ttccgaataa gcagaaatct cgggaacatc ggaagtacaa attcgacctt tgcgcaactc 
      781 caagtgatga acaccatagg gaactatttt catatctgct ttgccgttct tcgtggtgcc 
      841 gattctaaat cccttcaagg gatgaaaaca ggctataaaa tcaccctctc cgtactcggt 
      901 tggtctggtg gtgtcagtgg gaaccagtat atcaagatag tactggttcc cacgaccctc 
      961 caattttcag cctcagtcgt cagcgctttt tgcgctttga agcatccttg ccagaaatag 
     1021 caccgggcag cacgttggca aaaaaatcaa agatgttctt accccagggt aaattagcat 
     1081 tttgaatatc ctcaacagcc tgagtgccaa gaccaccaaa aacattccaa gcgttattcg 
     1141 ggaaagcttt tttgatatca aactcctgtt tgaagccagc tttctgtaaa tctttattca 
     1201 cttgagcatt gaaagcagca atatcccttt gcgtcataga ctgcacgtta taaccatact 
     1261 tttgcgcagc agcatggata gaagcagaaa ccttctgagc ggcggcggac tggtctgcgg 
     1321 cgtactttgt accagccaaa tgagcatccg cagtatactt ctgagccata gcttgaatat 
     1381 tggtagaagt aagctgagtt tgtgcctgga gttcggaagt atatttggac atagccgtat 
     1441 atttatccgc gatagcctga ttagactgag cagaaacacg ggtaccctca agacttaaaa 
     1501 aagaactaag caagctccca aacaagccag caacagcacc agtggcacta ttatccacac 
     1561 tgcccatagc accggacggg gcagaggagc tagccgttgc gccagaagta acagcggcac 
     1621 cgctaccacc agtgacagaa agaaccggat taaggccagc agcaattaaa tcacgcacct 
     1681 ctcgttgatg ggcagtagag ctcatacgct cctgccaatc tctatttttt tgggcctctt 
     1741 gagaattgta ttttcttgca agctcagcct gctgctcctg ccaagttctc agctcctccg 
     1801 cctgcttagc ggaggagctt gtattctgac cggcaatgcc ctggagggca cctgcccagc 
     1861 tagccatctt ctggccactg gacatagtag ggtatcgagg attaccaaca acctggagga 
     1921 caggattggt gacaggctgg atggaacggc ccgaattaat agccattata tcacctccga 
     1981 ttagtgatgg tcaataaggc cagggatact atacataggc ataggccgag tagccttaca 
     2041 ctggatgtac aagtcggcaa acatttggtt agacacagca gaagtaacag caagtacgcg 
     2101 gtcaacattg gtcttatcct cacgaatcca cgcatcagac aacttgggga gctgggtata 
     2161 ctcgtcggca agatgccaaa catcaaggga ggtcggagcc ttggaacgca tttcaccagc 
     2221 aacgcgggaa ggcttgtaac ggtagtcagc ccaggcttcc tgataaccaa aaacctcatt 
     2281 gtcctggacg gtaccctggg cgtaaatctc cttgttcaag ataggctgct cgccaatgtt 
     2341 ggcaaagacg ggaaaatagt aatccaggcg gtcacgacga gaccaaaaac gctcaaggcc 
     2401 ctgctgatag gtatggtcat agcgggcaac catgataccg atcacaaagc cgtgctcaac 
     2461 gaaagacttg ataaagtcac catgaacgtc agtagtaaca gaaaaagcgg cagtatcgcc 
     2521 gagaggagtg ccagaagatt gagtagccga ggattggaca acctggttga tattaacagg 
     2581 aatacggttg ccaccaagat actcaggacg ctggagacga gcatcgggag aagtaacgcc 
     2641 aaaatgagac ttgagaattt caatgtaacg agtgccacct cttgcatcct tctcgtaaag 
     2701 cttctgaatc tggaaagcca tgcggagctg gttaatagta gcagcggtta cgttaccaga 
     2761 ctggattgcc caaaggttat ccaaatacat agagccatca cgagaggtcg gagcatcaaa 
     2821 accaacaccc gtagccacag attcaacatc agtgccgcca agattactac caaaattcca 
     2881 ggtctggata acggaagaat aatccttatt aggctgcgga ccagaaatcc aagcagacat 
     2941 aggagcctta aattgagaat ggtcaacgcg atcggccaga gtcacaacgg ggagattacc 
     3001 accttgagca acaggaatag tcacgtcagg gcccttctgg ggagcaggca gcgcagaagt 
     3061 gaagtagtcg tggaacttgg cggccttgaa gggcataccg cctttgacaa catcggtgat 
     3121 atagttggag ccgttagaac ctgcaagggt agcatcatcc acggggatgt tgagggggtc 
     3181 ggagaggttt tcatcacgga accactcatt catgatgagg gcgtaggcac ggaaggggag 
     3241 agcgttaacg gagaggttgg caacaccagt agggatgccc atgtagtcgg caatggagcc 
     3301 aatagaccag ccaccagagg gcgcagtcac ctggggcacg gaatactcca cggaaggaat 
     3361 ccaggcggac tgagtgttct cacccatgag ctcacgccaa tgctgccata cgatacggtt 
     3421 gggcacgaag taaaaatagg tgtccaagta gagattatcc atcatagggg tgagcagagt 
     3481 ttgcaggcgg gcaaccatgg atgtcttcac ttggaaagta tcaccgggaa gaacttcatc 
     3541 cacatagaag gggataacgt ctccgacatt gaaactgagt ttaacactat ggtcacgccg 
     3601 aaaagtgcta cgagcaatat caaggttagt aggattaaga gcaaatcttg tattttcatt 
     3661 acgagacaag ttaatacctc cagtcagtaa cggttgttca aaaggagggg cccatggggc 
     3721 ccctcgctct ctgttgttca cacggccagg gcggccgtgt atgccttgac cagaacctca 
     3781 acggctcaag ccaatgtcag gaatatgaaa tttaaccagc gggtgaggct ggcgcggggt 
     3841 ctgtctcacc tccttcaggg ctctgtgggg ccgctggcgg ctcaccagcg gaattttggg 
     3901 aggtgggtgg tgtaaccata cccatagcct ccaaccagct cacagagcct gcctgagcga 
     3961 gccaagcgtg gaatgactga ccgaacttct cacgggtttc gaggggtaag ctcataaacg 
     4021 tctgctcggc ctctatcatg tgattgagca gcccggcata ggtctggggc atttcggaga 
     4081 aatcaccaaa catgccttgc accttctgca aggcgctcgc atcaccagcg ttaaacctgt 
     4141 ccatgatttt gtgaaggtcg acggaatcct tgtgggactg aatgaaggcg tagaggtctt 
     4201 ctttaccact ctccttgagg gtcataacac cgaagcggtc aaactccgga gaataaagaa 
     4261 tcttctcgcc gcaaccgggc tcagagcaaa aatgctgctg ttcacgatgc caagtctcaa 
     4321 acattggcat cctccttctg catagagcgg agaacctccg cgccgtcgga aacgagctca 
     4381 tgaagctgcg ccggaatgag aacaccctta tcggaatcga actcaccgat gcggaaaagc 
     4441 tgaaaatcgg aagcgtgagt aaaaagcaca ccatgggatt ccatgatagc gttggcgaaa 
     4501 ttgcgggcgg cgatatagtc attctgttcg gtggtgaggc cgaaaaaacc agaacgcagg 
     4561 tcacggatag cgtaaacgtt aagcatcata ttgatacaac tccttaatca gtttagtgta 
     4621 aagcttgcgc atgccgtcga ggcgctcctg atgggccata cggccagcgg agccgacatc 
     4681 aacacttttc tcaagaacct cgaacttgag cacagtctcg acgaacatat cctgatacac 
     4741 ttggtcaata atttccatcg tttgagaaat atccattact ctgactccaa aaaaccagat 
     4801 agctcaatga gccggatttg cagttccagg gcgaggaact cataaaaatc aagctccata 
     4861 tcgagagaac gccaaacttt ggcggccagc tcgtaacagt cggcatcgag attcagccgg 
     4921 acacagacgg tagcacgttc gtcattcaca tcctgatacc tccacggtag attttggggt 
     4981 tcacgttgat acgcttactg ttcacggcgg tatggcgaaa tacctgcctg tcctgggaac 
     5041 gcctcatcct tcgagccatg attacaactc ccttctcaaa ttttttatac ggttatggag 
     5101 cacgcgctcc tgggtctcaa ggatttcttc gtaggtcatg gtggactggg ccagcttggc 
     5161 cttcttgccc tcttcagcaa agtgcttgcg cttctccttg atggcagcca taagctccgg 
     5221 ttgttccaag tcaaaaagct tatcgaaata cttgggggga cg 
//
