FEATURES             Location/Qualifiers
     gene            139..1863
                     /locus_tag="Alpa_01"
     CDS             139..1863
                     /product="capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4]"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSKVLLPQYEVYSANTSIYKNDTNRGQVNPSSLISYLGVKGFGYSTVNQYLRRFPAIFNLAYWDIFKNYYANKQEENAYVITGINHIWKSISIGDGVTWLKTWQDNKSAAYKIDPTTEKPKYIRLDFEEEISPEEVNEIEFLTNNPNTNAVSNSLTKLGDSFIFERTDPDALGIKGPDNPRKATKVYAYKVKKAIQIAYYNDAAGENLITMPNNQKIKLTPFPLKNIDDTRTEILAAKSTSAYILSNVRMPYGAATGTIELPNYNRTKVYRSSNAWFSQAGLAVKTYLSDRFNNWLNTEWIDGTTGGINAITAVDVTDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSATLPESPIFCGGMQSEIAFDEIVSNSATEEEPLGTLAGRGVATMYKSGRGLKIKCTEPSMIMALGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELITEEAAAWNTETTENYKHIYSSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENTDHTIGNASTYIDPTIYNSIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1868..2191
                     /locus_tag="Alpa_02"
     CDS             1868..2191
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKTATSRKGWINDPNLTYQAEPREVKLRKIINGEANNMEDGVFPTIYTEKKDGVQPEFDIRTDRFEIAIDAMDKINQSAASQIAKSSGETEAVKDFGTETKTDPEKS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2346..3554
                     /locus_tag="Alpa_03"
     CDS             2346..3554
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKFEDLLKLLEKGENLTNPLSGIIGGASGILNMLGVGRKKQIRQQKEMMENAAKINYKYGEMAAENAFERQQVLYDRTYQDQSYANKVAQMDAAGLSPGLMYGGGGASGGGAGSTTGAPMGATGAAGAGSAADPNMQLQALMSLRQVRMSERKNEAEINLLNTQADALKAEAGKNKEETQTIIDKRIWEVKQEMFKGWKGFIDTANQLWDQMVKWQPTEKTTIDGKEVEIPKYFEIEDDKFGKIVFGEESFQGGMMTAEKQILEGTAAIKTLESIYADEKLSAEIRKINADACSGMAQAAYYYAAGETQKAEAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLTIGGKTGKLIREYTEKRMSETPPKNSTTVTQHFDPEMQFKGVDKTVTTKW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3746..4462
                     /locus_tag="Alpa_04"
     CDS             3746..4462
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VRLMEEIKSNPKNIIFATLTFSEESLKKLEYDEKEPNKAPQKAISLFRKRWWKKYKEPLKHWLITELGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWIFFGYEVNERTINYIIKYITKRDEANPEFNGKIFTSKGIGKEYIGENSLRRHRYQDRFTEETYRTNSGIKIALPTYYKQKLWTVQEREALRIIKEEKQVKYYNKTPIRVETIEQYREYVNAVKYWQSIKKYDGKRKKGNM"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4511..4867
                     /locus_tag="Alpa_05"
     CDS             4511..4867
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MGSGIHNQKDRRHLNAKQDFKAYKNRGGIGDRAENLRELIGLERVVRQDFGYEGTYYVTEDGETYDEEYVDAHNPRKTGVKFYEVSNWRYNRKKGIYEPVIRRIVMIEIKEIQLTLEL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4864..5034
                     /locus_tag="Alpa_06"
     CDS             4864..5034
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MNEKVKKIVKWIAVIAAAIGAAAAVILEQGCTHKHTLKANGIKIDTIEVSTTTKIK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 atcacgacaa aagtaaagac gctgccaaca accgggcctg tattcggaag cttcaaacac 
       61 caaatcgacg tattcgtaat tccgatcagg ctctatatag cagcgctgca taataacgcc 
      121 ttgggagtgg gattaaacat gagcaaggta ttactaccgc aatacgaagt ctacagcgct 
      181 aacacatcaa tctataaaaa cgataccaac agagggcaag ttaacccgag ctcgctgatc 
      241 tcatacttag gagtaaaagg attcggatac tctacagtca atcagtacct tcgcagattt 
      301 cctgcgatat tcaacctggc atactgggat atattcaaaa actattacgc caacaaacag 
      361 gaggaaaacg catacgtaat caccggaata aaccatattt ggaagagcat cagcatagga 
      421 gatggagtca cctggctcaa gacatggcag gacaacaaaa gtgcagcata caagatcgac 
      481 ccaacaactg aaaaaccgaa gtacatcagg ctagactttg aggaggagat ctcacccgaa 
      541 gaagtcaatg agatcgagtt cttaacgaat aatcctaata caaatgcagt atcaaacagt 
      601 ctaacaaaac tcggtgacag cttcatattt gaacgaacag atccggatgc actaggaatc 
      661 aagggaccag acaacccgag aaaagcaacc aaagtctacg cgtataaagt caaaaaggct 
      721 atccagatcg catactacaa tgatgcggcc ggagagaatt taataacaat gccgaacaac 
      781 caaaaaatca aattaacacc atttccacta aaaaacatcg acgatacacg aaccgaaatc 
      841 ttagcagcaa agagcacctc ggcatacata ctaagtaatg taagaatgcc gtacggagcc 
      901 gcaacgggaa ctatagaact gccaaattac aaccgcacga aagtatatag aagctcgaat 
      961 gcgtggttct cacaagcggg gttagcagta aaaacatacc ttagcgacag attcaacaac 
     1021 tggctgaata ccgaatggat cgacggaaca acaggtggaa ttaatgcgat tacagcagta 
     1081 gatgtaaccg atggaaagct cactatggac gctctgatcc tccaaaagaa aatattcaat 
     1141 atgctaaacc gcgtcgcgat cacagacggt acttaccaag catggagaga agcgacatac 
     1201 ggaattagaa gcgcaacact gcctgaatct cctatattct gcggcggaat gcaaagcgaa 
     1261 atcgcatttg acgaaatcgt atcgaactca gcaacagaag aagaaccact gggaacactt 
     1321 gccggacgag gagttgcaac catgtacaaa tccggaaggg gcttgaaaat caaatgtaca 
     1381 gaacccagta tgattatggc cttaggatcg attacacctc gaattgatta cagccagggc 
     1441 aacaaatggt ggacaagact gcaaaacatg gatgacttcc ataagccaac attggacgcg 
     1501 atcgggttcc aagaacttat cacagaagaa gcggcagcat ggaatacaga aaccacagaa 
     1561 aactataagc acatatattc gtcactagga aaacaaccgt catggatcga atacacaaca 
     1621 gacgtaaacg aaacatacgg cgaatttgcc gcaggaatgc cgttagcatt tatgtgctta 
     1681 aacagagtat acgaagaaaa cacggaccac acaattggca acgcgtcaac ttacattgat 
     1741 cctacgatat acaacagcat attcgcagag tcaagactta gttcgcagaa cttctgggta 
     1801 caagtagcat tcgacgtaac agcacgccga gtaatgtcag caaaacaaat tccaaattta 
     1861 taacaccatg aaaacagcaa caagtagaaa aggatggatc aacgatccga acctcacata 
     1921 ccaagcagaa ccaagagagg taaaactgag aaagataatc aatggagaag ccaacaacat 
     1981 ggaggatggg gtgtttccaa caatctacac ggaaaaaaag gatggagtac aacccgaatt 
     2041 cgacataaga acagaccgat tcgaaatagc gatagacgcg atggacaaga ttaatcaaag 
     2101 cgcagcaagc caaattgcaa aaagcagcgg tgaaaccgaa gccgtgaagg atttcgggac 
     2161 agaaacaaaa accgatcccg aaaagagcta aagcagtcgt ataaagctct accaaaactc 
     2221 aaagaggggg gataattccg cccccctctt ttaaccctcg caaatgcgtg tggcacagag 
     2281 cggtagacgt ttatacatat ataacaagaa cataagtata aattcttttt aaaaaaagaa 
     2341 cgaaaatgaa attcgaagat ctattgaaat tactcgaaaa aggagagaat cttacaaacc 
     2401 ctctctcggg aataataggc ggcgcatcag gaatcctcaa catgctgggc gtaggcagga 
     2461 aaaaacagat aaggcagcaa aaagaaatga tggagaacgc agccaaaata aactacaaat 
     2521 acggagaaat ggcagcggag aatgcgttcg aaaggcagca ggtattatac gacagaacct 
     2581 accaagacca aagctacgct aacaaagtcg cacaaatgga tgcagcagga ttgtctccag 
     2641 gcctaatgta tggcggaggc ggggccagcg gtgggggggc aggatcgacg acgggcgccc 
     2701 ccatgggggc aacgggtgct gccggtgcag gttcagctgc cgaccctaat atgcagctgc 
     2761 aagcattaat gtcactacga caggtgcgga tgagcgagcg aaagaacgaa gcagaaatta 
     2821 acctacttaa tactcaggca gatgcactca aggcagaagc gggtaaaaac aaagaggaaa 
     2881 cccaaacaat aatcgataaa aggatatggg aggtaaagca agaaatgttt aaaggatgga 
     2941 aaggcttcat tgacacagca aaccagctgt gggaccagat ggtaaaatgg cagcctacag 
     3001 agaaaacaac aatcgacggc aaggaagtcg aaataccgaa gtacttcgag atagaagatg 
     3061 acaaattcgg caaaattgta ttcggagagg aatcattcca aggcggtatg atgacagctg 
     3121 aaaaacagat cctcgaggga acggcggcga tcaagacttt agagagcata tacgcagacg 
     3181 aaaaactatc agcagagatc agaaagataa acgcggatgc atgcagcggg atggctcagg 
     3241 cagcatacta ttatgcagca ggcgagaccc agaaagcaga agcaaagatg ctcgaagtaa 
     3301 aaaagagaac cgaagaggca accgcagaac tgcgagagct tcaatactgg accgagatag 
     3361 caaacacgat cattaaacta gcacaagtag taggaaatct aacgatcgga ggaaaaacag 
     3421 gaaaactaat cagagaatac acagaaaaaa ggatgagcga aacacccccc aaaaactcaa 
     3481 caacagtaac acagcatttc gatccggaaa tgcaattcaa aggagtggat aaaacagtaa 
     3541 caacaaaatg gtaagaaaaa aatgatttta agagggaaaa tttcaaataa aaccaatgtg 
     3601 cctatatcca agtatcattg agaacccaag atacgccaaa tcaaatgaaa accgcaaaag 
     3661 aataaaggat tatcgcctaa gatggattca aattccatgc gggcactgcg aagaatgcag 
     3721 acgcgcaaaa gcaaatgaat ggagagtgag attaatggaa gaaataaaat caaatccaaa 
     3781 aaacattata tttgcaacgc tgacattctc cgaggaaagc ctaaaaaagc tggaatatga 
     3841 cgaaaaagaa ccgaacaaag cacctcaaaa agcaatcagc ctatttagaa agcgatggtg 
     3901 gaaaaaatac aaggagccac taaagcactg gctgatcaca gagctaggac atgacaacac 
     3961 caaaagaata cacctacacg gcattatatg gacagaatta acagaggaac aattcgaaaa 
     4021 agaatgggga tatggttgga tattcttcgg atacgaagtg aatgaaagaa caataaacta 
     4081 catcataaaa tacataacga agagagacga ggccaatcct gagttcaacg ggaagatatt 
     4141 cacttcaaaa gggatcggaa aagaatacat aggcgagaac tcactcagaa ggcatagata 
     4201 ccaggataga tttacggagg aaacatacag aacaaactca ggaataaaaa tcgcactacc 
     4261 aacgtattac aaacaaaaat tatggacagt tcaggaacgc gaagccctcc gaatcataaa 
     4321 ggaggaaaaa caagtaaagt actacaataa aactcctatc agagtagaaa caatagaaca 
     4381 atacagggag tacgtaaacg cagtaaaata ttggcaatca atcaaaaaat atgacggaaa 
     4441 gagaaaaaaa ggaaatatgt agaggctatg cagacttaat cataaagaaa gaaaaactaa 
     4501 ttcgtgaaat atgggaagtg gaattcacaa tcagaaagat agaagacatc ttaacgcgaa 
     4561 acaagatttt aaagcctaca aaaacagagg aggaatcgga gacagagccg aaaacctcag 
     4621 agaactgatc ggcctggaaa gagtagttcg acaagacttc ggatacgaag gaacatacta 
     4681 tgtaacagaa gacggggaaa catatgacga ggaatatgta gatgctcata atccacgaaa 
     4741 aaccggcgtt aaattctacg aggtgagcaa ctggagatac aacagaaaaa agggaatata 
     4801 cgaacccgtc atcagaagaa tagtaatgat cgaaatcaaa gaaatccaac taacattaga 
     4861 actatgaatg aaaaagtaaa gaaaatcgta aaatggatcg cagtaatagc agctgcgatc 
     4921 ggcgcggcag ccgccgtgat cctggaacag ggatgcactc acaagcacac cctcaaagca 
     4981 aatggcatca aaatcgacac aatcgaagta tcaacaacaa caaaaatcaa gtaacatgga 
     5041 caacaaattc agaaatcagc tgcttgctga aagcaaaaaa aaagaggagg aactcaaaaa 
     5101 cgtaaacctc gaaatcg 
//
