FEATURES             Location/Qualifiers
     gene            complement(44..1678)
                     /locus_tag="Alpa_01"
     CDS             complement(44..1678)
                     /product="capsid protein VP1"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSEVLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHGDFRSNLSFWHLNRIFEDKPNLNTTFVECRPSNRVFATSETEDDKFWVQMYQDVKALRLMPKYGTPML"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022322420.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1705..2541)
                     /locus_tag="Alpa_02"
     CDS             complement(1705..2541)
                     /product="putative replication protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MYLASVEAKVPCGWCVNCRQNKRQSWVYRLQAEAKEYPLSLFVTLTYDDEHLPIERIGSDLFQTNVAVVSKRDVQLFMKRLRKKYEDYKMRYFVTSEYGAKNGRPHYHMILFGFPFTGKMAGDLLAECWQNGFVQAHPLTIKEIAYVCKYMYEKSMCPEILRDEKKYKPFMLCSRNPGIGFGFMKADIIEFYRRHPRDYVRAWAGHKMAMPRYYADKLYDDDMKAFLKEMREEFFRHKMFNEWIDYCARENPILTDLMQLEQREEYEKRMNERLRCKM"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022322419.1"
                     /inference="similar to AA sequence:INSD:WP_005867316.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bactNOG166725"
                     /db_xref="eggNOG:bctoNOG24068"
                     /db_xref="eggNOG:NOG117857"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2764..3636)
                     /locus_tag="Alpa_03"
     CDS             complement(2764..3636)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MPIGAIVGGLGSLAGSMIGANAQRQANIQNMQLAKYQNNWQTAENEKAYARSVEMWNMQNQYNSPTAQMSRLRQAGLNPNLVYGSGVTGNSAGSAPQYQPAKIQRATMEPYRGWNLGLSDAASMYMAMRQNKAQVENMEAQNKLIKEQARTEGIRQGNIAMSTARSGFDLNLARELRNVSIDRAIAEKNLSEASAAGAWTGANQKVLQYELDRTLFDNKIKLSNAEYSTAMEALRKLRQDNDINAFRYSMERVFGNSSDVKDVASELVKRMGLLLMRPDIKELDQMFNPK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 22 and 23 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:INSD:WP_022322418.1"
                     /inference="similar to AA sequence:INSD:WP_005867312.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3638..3829)
                     /locus_tag="Alpa_04"
     CDS             complement(3638..3829)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MRRFYFHVQFTDVEGVERFRSIQFSARDIIQAHNAGRKLVALLVCDHTVKEINAYYLESLKID"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4451..4810)
                     /locus_tag="Alpa_05"
     CDS             complement(4451..4810)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MFVTAYNFSNLPSELIQEKVSDEVLVEPSESFTVRELIYRLAMGMPVSSGVRSGDYPDHDQDFDDVLPTEDPDFDLADYATLKNDLADRERQRKIDMEKAYKEKLEKEKTPDPAPDPAQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_022322421.1"
                     /inference="similar to AA sequence:INSD:KDS61826.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 caaaaaacta aaaaatgcaa caataaaaaa ttcaagcata atattaaagc attggagtac 
       61 cgtatttagg catcaaacga agagctttga catcttggta catttgtacc caaaacttat 
      121 cgtcttcggt ctctgatgta gcaaaaacac ggttactcgg tctacactca acaaatgtag 
      181 tatttaagtt cggtttgtcc tcaaaaatac gattcaaatg ccaaaatgaa agattactac 
      241 ggaaatcgcc atgagcttcc gaaggatgat acttatattc agcataacgc ggagtataac 
      301 caaacgtacc attattgtaa gctgcatctt cagatacaaa caattcttga ttcttaattt 
      361 cctgttctga caaatgggca aattccggga aatagaaatc catgttatca aacttcgtaa 
      421 aatcacgcgg aacaccctgt tgatagccgg aacgcggagt aatagacatg ataccgataa 
      481 tatatccatg ctcttcaaaa taatgcttga aaccgttatt gattccagca gaaataccat 
      541 gtccggccat atttgcctgc ggtgacgttt catcagtcga ggatgtttgc aatacttccg 
      601 acacagaaat aggcatacga ccgccaccga ggaactgcgg acgctgtaaa cgcgcatcag 
      661 atgaacgaac accaaagtgt gacagaatct gttcaatata acgagaacca ccacgagcgt 
      721 tacgttcgaa ccaacgctgc aaagcattcg aagtacgaag gtcgttaatg ttaattccca 
      781 tctcgtcaac attgactttt aatgtaccgt tcggatcgag ttcgggcgca cggttatttg 
      841 taccaccatt gacggcaacc attaaagcag aattaggatc gttagccctg gtcatagtaa 
      901 tatcataagc acggccattc tcaaattcac gaccagaaga atctacccat ttttgactat 
      961 cagactgacg ttcataaaca acatccatag aaccgccagc gccttgcaca ggaacagtga 
     1021 cttcgggccc acgttgcaac cacggaaggg cagaagtaaa atagtctttt tcccaagcac 
     1081 gacgacgaag cgacatgagc gccataagct gatcaccacc aacggttgtt ccactaccta 
     1141 aggtgaaatc gataggttcg gtcaaattct gatcacgata atactcatta tagatcaact 
     1201 gataggcacg gaaaggcaac gcggatactt ggaaaccgga aggaacctta acgccgttaa 
     1261 caacatcata agatttatta ccacaagcag aaagcgtagg caatccaaga taatcccaga 
     1321 gagaagaatc gccaaaatat tcttttatta atgaagccga agaaactaag tgcgagtctt 
     1381 gattaatttg aattttcggg aacattggca tatcttcacc gtctacgcct ttagttatga 
     1441 agtcttccca ttcattccac acaagacgat tcggcacaaa gaaatagtga gtaaaaacat 
     1501 tcacgcggtg catcatagga gccacaaggg gagccaaacg cacgagggat tcagttttca 
     1561 cacggaattt atcaccggga acaacaggca tacacataat aggtacgagt tcgcccatgt 
     1621 tcaacgttaa ctttgattca tatgataagt tgaaagcatt ccgacgagga cgtttcattc 
     1681 ttatcgagtt aaatatattt gccattacat tttacatctt aaacgttcat tcattctttt 
     1741 ttcatactct tcgcgttgtt caagctgcat gagatcggta agaataggat tttcacgagc 
     1801 acaataatca atccactcat tgaacatttt atgtcggaaa aactcttcac gcatttcctt 
     1861 taaaaaggct ttcatatcat catcatagag cttatcagca taataacgag gcatagccat 
     1921 tttatgaccg gcccacgcac gaacataatc acgaggatgt ctacgataaa attcgatgat 
     1981 atcagctttc ataaatccaa agccaatacc gggatttcgg gaacaaagca taaaaggttt 
     2041 gtacttcttt tcatcccgaa gaatctcggg acacatactt ttttcgtaca tgtatttaca 
     2101 gacataagca atctctttga ttgtcaaagg gtgagcttgt acaaaaccat tctgccaaca 
     2161 ttcggccagt aagtcaccag ccattttacc agtaaaaggg aagccaaata agatcatatg 
     2221 atagtgaggg cggccatttt ttgcaccata ttcagaagtg acaaaataac gcattttata 
     2281 gtcctcatat ttctttcgaa gccgtttcat aaacaattgt acatcacgtt tggatactac 
     2341 ggcaacgttc gtttgaaata ggtcactacc aattctttct atcggtaaat gttcatcatc 
     2401 ataagtaaga gtgacgaaca acgatagcgg atattctttg gcttccgctt gtaagcgata 
     2461 tacccaagat tgacgcttat tctgacgaca gtttacacac caaccgcaag gaactttcgc 
     2521 ttctacactg gcaagataca tagggtgaag gcatttagcc attcaacgca ggggtatcgg 
     2581 gtttgtcaaa gatcgacttt acagcatcaa tgaccgtttc taaaacggca atgataattt 
     2641 tccaaactgg tttcataagc gaacacctcc tctacttaca cgataaccac gaattctacg 
     2701 tcttctacta cgaccgagaa atccacgtct acggcctcta cgtctacgtc tcataacaaa 
     2761 aaattatttg gggttaaaca tttggtcaag ctccttgata tcgggacgca tcaataataa 
     2821 acccatacgt ttcaccaatt cagaagccac atcttttaca tcagaactat ttccaaaaac 
     2881 acgttccatg ctataccgga acgcattaat atcattatcc tgtcgaagtt tacgaagagc 
     2941 ttccatagca gtagaatatt ctgcattcga aagcttaatc ttattgtcaa acagggtacg 
     3001 atctaattca tattggagta ccttttgatt cgcaccagtc caagcaccag cagcgcttgc 
     3061 ttcggagaga tttttctctg ctatagcacg atcaatagat acgttacgaa gctcacgagc 
     3121 aaggttaaga tcaaacccgg aacgagcggt agacatagca atattgcctt gacgaatacc 
     3181 ttcggttcga gcttgttctt taatgagctt attttgagct tccatgtttt caacttgagc 
     3241 tttattttga cgcattgcca tatacataga cgcagcatca gataaaccaa gattccagcc 
     3301 gcggtagggt tccattgtag cacgttggat tttcgcgggt tgatattgcg gagctgaacc 
     3361 agcgctatta ccagtaacac cactaccata aaccaaatta ggattaaggc cagcttgccg 
     3421 aagacgggac atttgcgcag tcggtgaatt atactgattc tgcatgttcc acatttcgac 
     3481 actacgggca taagcctttt cattctcggc ggtttgccag ttgttctggt atttagccaa 
     3541 ctgcatgttc tgaatattag cctgtcgttg ggcatttgca ccaatcatag aaccagcaag 
     3601 agagccaaga ccaccaacta tagcaccaat aggcatacta atcaatttta agtgattcta 
     3661 aataatacgc attgatctcc tttacggtat gatcacaaac gagaagagct accaattttc 
     3721 taccagcatt atgtgcttgt ataatatcac gggcagagaa ttgtatacta cgaaagcgtt 
     3781 caacaccttc tacatcagta aattgtacat gaaaataaaa ccgtctcatt gtccttttaa 
     3841 tttaaggcta ccgagattct tttagaacta tggtagcgtg atttatgcag caaagaaaat 
     3901 aaaatattcc acactgaaaa aaacggattg ttaaaatccg tttaggtgtc agtgcgcgca 
     3961 taattaatcg agttacctat tacgcgcgca cgagtacata caacccccta ttatccccct 
     4021 ttaaaagggg gtaaagtatt gatttataac gttaacactt tttatattct atttattcta 
     4081 tttataagcg tataaacagg tctactccat tgagggcgat cgcgttcggg tacctcaggg 
     4141 tatcacgtcg ctacgctttg ttctacccta ttggtaccgt ctcgcgatcg caggcaacta 
     4201 tcgttgccaa ttttcaccgt cgctatgatt gtcgttacag acgccttcgg cagataggta 
     4261 tcgcttcgcg atcgattgaa aaacgtgaat ttttcacgta aaggttttgg ttaaattggg 
     4321 tcgcgagaaa gaccatgcca agacgacgtc cgctttcgcg agttgtcgcg atcagcgcag 
     4381 gtgcaagtac aaacgcctaa acccggccgg ggataccagt cgggtagggg acaaggacag 
     4441 ttaaaacaaa ttactgagca gggtcgggag cagggtcggg agtcttttcc ttttccaact 
     4501 tttccttata cgccttttcc atgtcaattt tgcgctgacg ttcacgatcg gcgagatcat 
     4561 tctttaatgt agcgtaatca gccaaatcga aatccgggtc ctctgtaggt aatacatcat 
     4621 caaaatcttg gtcatgatcg ggataatcac cggatcgaac accggaagaa acaggcatcc 
     4681 ccattgcgag gcggtaaata agttcacgaa ctgtaaaact ttcggaaggt tctaccagaa 
     4741 cttcgtcact tactttttct tgaataagtt ccgaaggaag attactaaaa ttataagcgg 
     4801 taacaaacat atgaa 
//
