FEATURES             Location/Qualifiers
     gene            complement(63..212)
                     /locus_tag="Alpa_01"
     CDS             complement(63..212)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MGRNHSSYIYSNHCYNYDLMCTIVYNEYEYSKKQQQCNATDGTNNNVKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(324..476)
                     /locus_tag="Alpa_02"
     CDS             complement(324..476)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKKICYELEEDVITKKYIFTKQERRLICEKTYDKDNEDLEKWNQKQLKLF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(556..768)
                     /locus_tag="Alpa_03"
     CDS             complement(556..768)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MAATKFSVVKENKNTSELLIINYAGEWTYKTALAIAKEANREFNEEGWRIVCVVETKKLYPNENEKTKKD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1341..2372)
                     /locus_tag="Alpa_04"
     CDS             complement(1341..2372)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MCLYPKLIPNKRYLPTKKNGGIPPVCPDERLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWKYGITFTGYFVNEKTIKYITKYMLKVDEKHPKFRGKVLCSAGIGAGYLKREDAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTEEEREKLFLDKIEKGIIYILGIKIDLKTEELRYNGVLASERERCERLYHDNPKEWDKRKYLNRVKKQRQWIESKATMVAEKEKRKEERSEKRLNNDIDLFANLYFNSN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2375..3412)
                     /locus_tag="Alpa_05"
     CDS             complement(2375..3412)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MLGTIIGIGGAIGGAIAKNSAQSSQYQENLALMKYQAKLNQKQAYYSTGLAKDLWDYTNYENSMKHIKAAGLSPGLIYGQGGAGGTTSGAGQASGVGMPSKTGTEAGLQAQGMALQLANMASQVRLNESQADKNEADANKTRGIDTKLQEATIDNLIAQTSNEKVKKGLILGQIRVADAEEELKRNMADWTKDKADETRWNIKSLQKGIDKLTEEINGMKLDNELKERTIDNKVKESSLTLQNLMAEILLKGSQQKVNEEQAKAIPQQILQGWEDLTKKGKALIIQREQMEAYVQDVFNRYDLGKRGLDIEEQKLIKDIVLGMLEIASKGAGAALGAKVGKTGLQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3575..3931)
                     /locus_tag="Alpa_06"
     CDS             complement(3575..3931)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VQNKFLTYKNDNIMKYSFPTKNNDRLKSVEIYEGESIETKCARILQNKEPITDTAPIIYTAKEDGVLPAYNIRTDRFDIAMDAYDKITRSSAKKEIAPKPEDFGNVPNKTEGGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 atgtcgttaa attctctttc catttttaat agtttttagg attaatatta atttttgtac 
       61 tatcaacgct tgacgttgtt gtttgttccg tctgttgcgt tgcattgttg ttgttttttg 
      121 ctatactcat actcattgta cacgattgta cacataaggt cgtaattata gcaatgattg 
      181 ctgtagatat agctcgaatg atttcgaccc attgattacc ggtaattttc ataagtctcc 
      241 atttttaatg tataaataac ttccgcctat gaaggcgatt attaatagta atattactat 
      301 tccgaatact tctctaggca tgtttaaaat aatttaagtt gtttttgatt ccatttttct 
      361 aaatcttcat tgtctttgtc ataagttttt tcacatatta acctcctttc ttgttttgtg 
      421 aagatgtatt tttttgtaat aacatcttct tctagttcat aacatatttt cttcattttt 
      481 attgatgtgt gaaagtacac ataatttttt aactcctgaa atgtattgaa aatatatccg 
      541 tctgtttcat attttctaat cttttttggt tttttcattt tcgttgggat ataatttttt 
      601 tgtctcaact acgcatacga ttctccatcc ttcctcgtta aattctcggt ttgcttcttt 
      661 tgcgattgcg agtgctgttt tgtaagtcca ttcgcccgca tagttgataa tgagtaattc 
      721 acttgtattt ttgttctctt ttactactga aaattttgtt gctgccataa ttatttgtct 
      781 ttaagttctt taattttatt tataaatgtc tcgtaatcaa gataataaaa gtctataaag 
      841 taatctttgt aaactaatag ttttataagt tccgtattca tgattttctt tttttgtttt 
      901 acaaaatcta ataaattcct ttttttcttt gttataaaag aaactctaag ttttcatttt 
      961 tcacctcctt tcttattaac attgcaaata taattgattt ttttgatttt tgcagatttt 
     1021 cagatattta tttgaagtat ttaactatta ttggcaatag tatctttaag ccttcgtggc 
     1081 gtttgaacga ggattagagc aacagagagg cgccgagcct ctccttagcg actagcacca 
     1141 tagtatcggc ggagccgcac accacgaccg taggtcgggt gcccgtcacg ccttatcctg 
     1201 gtcttaaggt cgctgtctct cggataaagg tgtatctcac cctcccgtta tacaccctgg 
     1261 gccccccggc cttgaggtgg taaatacaga cccgtgtgat gttaacacgg agccccgttg 
     1321 gacatgccat agcgcagctt ttaatttgag ttgaaatata gattggcgaa taaatcaatg 
     1381 tcgttattta atcgtttttc acttctttct tcttttcttt tttccttctc ggcgaccata 
     1441 gtcgctttag attctatcca ttgtctttgc tttttaaccc tgttgagata ttttctttta 
     1501 tcccattctt tcggattatc gtgatatagt ctttcgcaac gttctcgttc gcttgcgagt 
     1561 acgccgttgt atcttaattc ttctgttttg aggtctattt tgattcctag tatatagatt 
     1621 attccttttt ctattttgtc taggaatagt ttttcacgtt cttcttctgt gaatattttg 
     1681 tttctataat agataggtag attgagtttt tcgccgtttc tcatccggta cgattcgttt 
     1741 gttttgcctg ggatatatac atgtctttta gcatcttctc gtttgaggta tcctgctcct 
     1801 attccggcag agcataatac tttccctctg aattttggat gtttttcgtc tacctttagc 
     1861 atgtattttg taatgtattt gatagttttt tcattcacga aatatccggt aaatgtgatt 
     1921 ccgtatttcc agttgtttgt tactttctct ccatttccca agccccatac tatcccatgt 
     1981 agatgtaatc tttctgtttt ctcgtgtcct agttctgtaa taaaccaatg ttttacggat 
     2041 tttccggtta attttcgtac tctttctaga cataacctta tggcttttgt tgcaatgtcg 
     2101 ttattatctt ttaagttgta tttttgtttg atttgcttgt aggatttatc atcgattgtc 
     2161 agtgtcagaa agtaggcgtt tggtgtttgt ctgttttctt ctgacattct taccatccat 
     2221 tgtctttgct tttgtttcct gcattcataa cagtccccac atgctgctgt tacataacgc 
     2281 aacctttcgt caggacaaac aggcggtatc ccgccatttt tctttgttgg taggtaccgc 
     2341 ttgtttggta tgagtttagg atatagacac atagttattg aagacctgtt ttgcctactt 
     2401 ttgcccctag tgctgctccg gctcctttcg aagctatttc tagcattcca agtacaatgt 
     2461 ctttgatgag tttttgttct tcaatatcca gacctctttt gcccaggtca tatctattga 
     2521 atacatcttg tacataggct tccatctgtt ctctttggat gattagtgcc ttacctttct 
     2581 tggtaaggtc ttcccatcct tgtagaattt gttgaggaat agcctttgct tgctcttcgt 
     2641 tgactttttg ctgacttccc ttgagtagta tttcagccat cagattttgg agtgttagag 
     2701 aggattcttt cactttgttg tcaattgtcc tttcttttag ctcgttgtcg agtttcattc 
     2761 cgttgatttc ttcggttagt ttatcaattc ctttttgtag gcttttgata ttccagcgtg 
     2821 tttcatcggc tttgtctttt gtccaatcgg ccatgtttcg tttaagttcc tcttcggcgt 
     2881 cagccactct gatttgtccc aatatgagcc ctttttttac tttttcattt gaagtctggg 
     2941 ctattaggtt atcaattgta gcttcttgta atttagtatc tatacctctt gttttgttgg 
     3001 catcggcttc atttttatct gcttggcttt catttagcct tacttgactt gccatatttg 
     3061 ctaactgtag tgccattcct tgcgcttgta gtcctgcttc tgttcctgtt ttacttggca 
     3121 ttcctactcc gcttgcttga cctgctccgc tagttgttcc gcctgctccg ccttgtccat 
     3181 atataagccc aggactaaga cctgcagctt ttatatgttt cattgaattt tcgtagttgg 
     3241 tgtaatccca taaatccttt gctaatcctg tgctgtaata agcctgtttt tgattcaatt 
     3301 tagcctggta tttcattaaa gctaaatttt cttggtattg actactttgg gcgctgttct 
     3361 tagcaattgc acctccaatt gcaccaccta taccgataat tgttccaagc ataattattt 
     3421 acattttcgc gctttgatgt ttcaaagcga tattcatatt acttgataat agattgtagg 
     3481 tgcgtacttt cgtgtatttt aaagtatttt gtctttacaa atactccgaa gtgcctgtta 
     3541 cctacaaggc tttaaagata cctctttaaa cagtttagtt ttcactaggt gagcctcctt 
     3601 ctgtcttatt tggtacattt ccgaaatctt ccggttttgg agctatctct ttctttgctg 
     3661 aacttcttgt aattttgtca taagcgtcca ttgctatatc gaatctgtcc gttcggatat 
     3721 tatatgcagg tagtacacca tcttcttttg ctgtatagat gataggtgcc gtatctgtga 
     3781 ttggctcctt gttctgtagg attcttgcgc attttgtttc aatgctttca ccctcgtaga 
     3841 tttcaactga ttttaatcta tcgttatttt ttgttggaaa tgaatatttc ataatgttat 
     3901 catttttata agttaggaat ttgttttgca ctgattagac gtctcgcttt aatttacaaa 
     3961 tttagttt 
//
