FEATURES             Location/Qualifiers
     gene            141..380
                     /locus_tag="Alpa_01"
     CDS             141..380
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VTETNEPLAGDIPIVYTKKTDGVLPAFDIRTDRFEVAREAMSKVQESEMAKEAQRMGILKPVEKAQESSETENKVDPDK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            516..1592
                     /locus_tag="Alpa_02"
     CDS             516..1592
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MGAFLSTLGSIGAGAQSVGQIASTGGGILGLFGIGNRKRAKRQLENQIKLNEAANESNYRWGEKAAENAFKRQMEAYERSYKDQSYAAMRKQMEEAGLSTGLMYGGSGSGGGSGFMTQGPMGQAHGANAGKADSPAEQWAMRANQIELGLNLANLKKQGEVLDSQAEQNRASASKTTEEAQTEREMREGKVKEIFQRGKSQYIDNVRKMFEDMAIEDNDRWGVEVYDDFYGDHRIDSTRLPTRKDSAEIIKTLSESEAAKGQSENSKALAELNTERKKYLFIEAMSNLIQAEAAKNSGLAAVENAATNRAQQAWRELTTQYEYGIEKTPKFWMDLGDRILKAIGVTVGAAAGARGLAK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 15 and 16 "
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1709..2665
                     /locus_tag="Alpa_03"
     CDS             1709..2665
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="VFRPINGVFDMCLYPKLIRNKRYLPNKKNGGNVPYCDDKRKKAVAIGCGKCIECRKKRANEWRVRLMIELKDHPENAHFVTMTYSDESLSKFEQEEALSVASRSIELFRKRWYKRYKCGIKHFLICELGGNDSQRMHLHGILWTEKSKEEVEEVWGYGFVDYGEFVNEKTVNYIVKYIFKVDEKHPDFVTKVWTSKGIGREYAESEGKCFNKFKGISTKDYYRMPSGLKVALPIYIRNKIFNENQREELWMQKLDQKKRYVCGEKIDISDKKGIQLYFRCLKYHQERTEALGYSSDVWIKKSYKKSLEKLNEINIFET"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2662..2940
                     /locus_tag="Alpa_04"
     CDS             2662..2940
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VIKKQLKTKAMKVYQVLKVTKEGQYLVKTCPMLKSAISRAKETVANTDVAPAEYQCVKKRKLENGYFYASVRLMHDGYAIDAEIWKTQVHHE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2933..3115
                     /locus_tag="Alpa_05"
     CDS             2933..3115
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MNKQALGEALKERLAKIQLEKQKTLEQLWNIELTEQATLEKMRRHGMFMEKDDLPQTNGN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gtgatcggtc gccgcgtaaa gagcgcccgg gaaattccta atctgtaaaa aaaatgagaa 
       61 agccaatcta tacgtacaga cctacattaa gggtcgacgc aacctacgaa gcagagggcc 
      121 tcgaggttaa attaaggaga gtgacggaaa ccaacgaacc gctcgcagga gatattccta 
      181 tcgtctatac aaagaaaaca gacggagtac ttccggcatt cgacattcga acggacagat 
      241 tcgaagtagc aagagaggca atgtcgaaag tccaagagag cgaaatggcc aaagaggctc 
      301 agaggatggg catcttgaag cctgtcgaaa aggctcaaga atcgtccgaa accgagaaca 
      361 aggtcgatcc ggacaaatag ggcaatggcc ttcgtaaatc gtcatgagtg aaccccccgc 
      421 ttagcggggg taacttacag atgttcactg cggtagacga ttatacatat ataacaagaa 
      481 agtatcttga ttttttttta aaaaaaaagt gaaaaatggg agcattctta tccacactag 
      541 gaagcattgg ggccggcgct cagtctgtcg gtcaaatagc aagtaccgga ggcggtatcc 
      601 tcggactatt cggaatcgga aataggaaac gagccaaaag gcaattagag aaccaaatca 
      661 aactaaatga ggctgcgaac gaatccaact atcgttgggg cgagaaagca gcggaaaacg 
      721 catttaaaag gcaaatggaa gcgtatgaaa ggtcctacaa ggatcaatct tatgcagcca 
      781 tgcgaaagca aatggaagaa gccgggcttt caacgggact tatgtatggc ggaagcggct 
      841 ccggaggagg cagcgggttc atgactcagg gacctatggg acaagctcac ggggctaatg 
      901 cgggaaaagc ggattcgccg gccgagcaat gggctatgcg agccaatcaa atcgagttgg 
      961 ggttgaattt agcgaacctg aagaaacaag gggaggtgct ggacagtcaa gccgaacaga 
     1021 acagggcgtc agcgtcaaag acgaccgagg aagctcaaac ggaacgagag atgagagaag 
     1081 gcaaggtaaa ggagatattc caacggggaa agagtcagta catcgacaat gtacggaaaa 
     1141 tgttcgagga tatggccatc gaggacaatg atcggtgggg agtcgaggtt tatgatgatt 
     1201 tctacggaga tcatcgaatc gactcgacaa ggcttccaac cagaaaagat tcggcagaga 
     1261 tcataaagac tctgtcggaa tcggaagccg cgaaaggtca aagcgagaat tcaaaagcct 
     1321 tggccgaatt aaatacagaa cggaaaaagt atttatttat cgaagcaatg agcaacttaa 
     1381 tacaggctga ggccgcaaaa aactccggat tagccgccgt agaaaatgca gcaacgaatc 
     1441 gagcgcaaca ggcatggcgg gaactaacaa cgcaatacga atacggaata gagaagactc 
     1501 caaaattctg gatggaccta ggggatcgaa tactaaaggc aatcggagtt accgtgggtg 
     1561 ccgcagcagg agcaagagga ctggcaaagt aatacagaat ttctaaaaaa agtattatag 
     1621 gggaggaaag ggtaaaccca atcctccttt ttaataaggt ttccgtacgg ccgatcagcc 
     1681 ttacggccgg cctataccgg cctccactgt gttccggccg attaatggtg tcttcgacat 
     1741 gtgcttatat cctaaactaa tcagaaacaa gaggtacctg cctaataaaa aaaacggagg 
     1801 taatgtacct tattgtgacg ataagaggaa gaaggctgtg gcgatcggat gcgggaaatg 
     1861 catcgagtgt cgaaagaaac gagcaaacga gtggcgagtg aggttaatga tcgaattaaa 
     1921 agatcatccc gaaaacgcac acttcgtgac aatgacatac agtgacgaat cactatcaaa 
     1981 attcgaacaa gaagaagcct taagcgtggc aagtcgaagc atcgaattgt tcagaaagcg 
     2041 atggtacaaa agatataaat gcggtataaa acactttttg atatgcgaat taggcggaaa 
     2101 cgactcacaa agaatgcatt tacacggaat attgtggacg gagaaaagca aagaagaagt 
     2161 agaagaggtg tggggttacg gttttgtaga ctacggagaa tttgtgaatg aaaagactgt 
     2221 gaattacatc gtaaaataca tattcaaagt cgacgaaaag catccggact tcgttaccaa 
     2281 agtatggacc tcaaaaggaa taggccgaga atacgccgaa agcgaaggga agtgttttaa 
     2341 taaattcaag ggaatttcaa cgaaagatta ctacagaatg ccatcgggac tgaaagtggc 
     2401 actgccaatt tatattcgaa acaaaatatt caacgagaac caacgcgaag agttgtggat 
     2461 gcaaaaactc gaccagaaaa aaagatatgt gtgcggggag aaaatcgata tatcagacaa 
     2521 aaagggcata caattatact tcaggtgttt aaagtatcat caagagagaa cggaagcctt 
     2581 aggttacagt tccgatgttt ggataaaaaa atcttataag aaaagtttgg aaaaactaaa 
     2641 tgaaatcaat atatttgaaa cgtgattaaa aaacaactaa aaaccaaagc tatgaaagtc 
     2701 tatcaagtct taaaggtaac gaaagaaggt cagtatctcg ttaaaacatg tcctatgtta 
     2761 aaaagcgcca taagccgggc aaaagaaacc gtcgcaaaca cggatgtcgc tccggccgaa 
     2821 taccagtgcg tgaaaaaaag aaaactagag aacggctact tctacgcaag cgttcgactg 
     2881 atgcacgacg ggtatgcgat agatgccgaa atatggaaaa cacaagtaca ccatgaataa 
     2941 gcaagcactt ggcgaagcac tcaaggagcg ccttgccaaa attcaactgg aaaagcagaa 
     3001 aacgctcgaa caactatgga atatagaact caccgagcaa gctacattag aaaaaatgag 
     3061 gcgacatgga atgtttatgg aaaaggacga tctaccacaa acaaacggta attgacgaag 
     3121 acggagtgat ccttactcag gaagaaacga atcgagcaat ttacaagaca ataaaagtcc 
     3181 acgtcgagaa gaaaacggat cagcaaggtc aaacacacgt atacaccacc cgtgttgtaa 
     3241 aaaagtgtgg tgttcaattt caattattcc aatatgaata agaaaaacaa agattttctt 
     3301 gagtccacag ggtggacaaa gaacaagacg atcgttgcga tcatcgcggt cgtctgcgca 
     3361 acaacagtcg tgctgcttac aagttgcaac gcgaaacaat tcgtaagtca gtcggcatcc 
     3421 actttcaaaa gcggagacac cgttgttacg aaaatcacgt acgaacaagt cggaaccatc 
     3481 aaaaaatgaa gacatgaaaa aagaaacca 
//
