FEATURES             Location/Qualifiers
     gene            131..517
                     /locus_tag="Alpa_01"
     CDS             131..517
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MQEFLHIVRLDGYSFLNWDVPIGKISRFFYRFNRFEAMKGSLRSKLKAVSLFYDYRDYQSLKNQLSLQELVFAELGYSDELFDSFYVKPHIKVLKNAYIDKWKDVNYKEVHYFRVKHKVLNDENNIFL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            514..711
                     /locus_tag="Alpa_02"
     CDS             514..711
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKIAPNQWIEIVKLISTFVIGIITTLFVQSCTLSLSISKNNSNSPQQTEQSSVSSVDSTSINLKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            739..2448
                     /locus_tag="Alpa_03"
     CDS             739..2448
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="VKNHPRRSGFDLSSKVAFTAKVGELLPVKWCLTMPGDKFSLSEQHFTRTQPVNTSAYTRVREYYDWFWCPLHLLWRNAPEVIAQIQQNVQHASSYDGSVLLGSNMPCVSLSQLSKLLSSLKGKKNYFGFDRSDLAYKILQYLRYGNVQTSSSTSGKNFGTSIPLSDRSYSQDYVFNHALSIFPLLGYKKFCQDYFRFTQWQDSAPYLWNIDYYDAKKSTSILPDTFSTSYLTHNTLIDMEYCNWNKDMFFGVLPDAQYGDASVVDISFGMSGQTVVASPSDISSRYTISNPSDSSTPNLSGSPLVLDVLALRRGEALQRFREISLCTPANYRSQIKAHFGVDVGSELSGMSTYIGGEASSLDISEVVNTNITESNEALIAGKGIGTGQFSDKFYAKDWGILMCIYHSVPLLDYVLTSPDPQLFLSENTSFPVPELDAIGLESIPLSCYSNSSLEIPITNPNVDAASLTMGYLPRYYAWKTSLDYVLGAFTTTEKEWVAPITASLWSKMLLPVTVDGSGINYNFFKVNPSILDPIFLVNADSTWDTDTFLVNAAFDIRVARNLDYDGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2451..2921
                     /locus_tag="Alpa_04"
     CDS             2451..2921
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MSRKVKKERYSSRLSYNYDYDSKKSKFVVRDKLAVLSSYADSDGVLHVLNDISLLFNQQRLENRLSSTELREMFNRYSPNKSRYLAQLDDDTLLSTLKSRHIQSLSEIKSWTEYCIENFDSLLKAQQAKENEIDDIQETVDEPSAGSSSGAGGSSD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2905..4125
                     /locus_tag="Alpa_05"
     CDS             2905..4125
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VALLIDSLNSCPYDLAIFGLIGSVFGSSMSARSQRKANEMNFKINQMNNEFNAKEAEKARAFQLDMWNKENAYNTPSAQRERMEQAGYNAYMNPADAGSASGMSSTTSASASSPAVMQATDFSSLGEVGVRLAQELKLFSEKKGLDIRNFSLKDYLKAQIDKMRGETNWRNLSPEAIRFNIMSGLEAAKIQMEGLKEQWINQKWSNNLLRANVANSLLDAEGKTVINKYLDQQQQADLNVKAAHYEELLLRGQLHSREARESLSRELLNYTRANGQKISNKVAERTANNLIYATNAAHYYEGTYNMYRGRKAKEDAASDFMGNQWQNQLTGEMLNSKRWDNEMQAWREAINSANALLRGSSDVMDSYNTYENGRYERGRPYTSDYEEYEQFDKARGTRRKTRKYKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_021963491.1"
                     /inference="similar to AA sequence:INSD:WP_007368519.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4403..4576
                     /locus_tag="Alpa_06"
     CDS             4403..4576
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKTKSVKEYWYLVRCHSIGREPEYDLVLKTRSDMKKYVIELRKEWSFVDAGRVDFSI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5089..5613)
                     /locus_tag="Alpa_07"
     CDS             complement(5089..5613)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MLKHIGAIHLRRHKIRNIFIYARIHKHARGELRDNRLRRPCRQPFGHVVINLRQRHFRHVLSVICQSHKITILMIIFYKVTLLCGSVSFFYQTIGALSTVDLYKFSCIFILNHSWMLTFVKILKYSIIHKIFYLGVTATRSGFPAYTVRSPIPNARNRVAINLRFAQMGKYFFL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="2 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="2 probable transmembrane helices predicted by TMHMM"
     gene            5602..5916
                     /locus_tag="Alpa_08"
     CDS             5602..5916
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MLEHLRLLEADRYKALALRYPNFISKFRPFILRSIPRVSKLQNFKDEYFEELVWMLPEIAESLKKKNNTDASGAFPQFKGLLKYVNIRDYQLFAKRLRKYLSKK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /note="2 probable transmembrane helices predicted by TMHMM"
     gene            5923..6513
                     /locus_tag="Alpa_09"
     CDS             5923..6513
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MKKFIRTLYPSTVQRPFVRISISFFSLTRMKSPKIFDRLYIRVGGLVVSIRNLRGNRLTVMLQTISIALYLFPLFIKPKSQFARALDSLTSSDLKKLKKESNMLRTKGLLYLMECLIFRIKNLSDMFPPGRISIDYSPDLPTMMVLFYEGLLKYMKLCNAYYDSLPETSPLRKQLREMYPNLYVGGVSTISDEVAK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /note="2 probable transmembrane helices predicted by TMHMM"
ORIGIN
        1 cgtattacga ctctttgccc gaaacgagcc ctttaagaaa gcaactccgc gaaatgtatc 
       61 cgaatttgta tgttggtggt gtgagtacaa tttccgacga ggttgccaaa taaaggattt 
      121 tcccgattat atgcaggaat ttttacatat tgttcgtctt gatggatatt cttttctaaa 
      181 ttgggatgtt cctattggaa aaatttcccg cttcttctat cgttttaaca ggtttgaggc 
      241 gatgaaaggt tctttgcgtt ctaagcttaa ggctgttagt cttttttatg attatcgcga 
      301 ttaccagtct ttgaagaatc aattgtctct tcaggaactt gtttttgctg agcttggtta 
      361 tagtgatgag ctttttgatt ctttttatgt taaaccgcat ataaaagttc ttaaaaatgc 
      421 ttatattgat aagtggaaag atgtgaatta taaagaagtt cattattttc gtgttaaaca 
      481 taaggtgttg aacgatgaaa ataatatatt tttatgaaaa ttgctcctaa tcagtggata 
      541 gaaattgtta aattgatttc tacatttgta attggtatta ttacgacttt gttcgtacag 
      601 tcttgcacgc tttctttgtc tatttcaaag aataattcta attctccaca acaaaccgaa 
      661 caatcttcgg tttctagtgt tgattctact agtattaatt taaaacgtta aattatgggt 
      721 ttgtttaatc tatcgagtgt gaagaaccac cctaggcgtt caggttttga tctttcttct 
      781 aaggttgctt tcactgctaa agttggtgaa ttgcttcctg ttaagtggtg tcttacaatg 
      841 ccgggtgata agttttcttt gagtgaacaa cattttactc gtactcaacc tgttaatacc 
      901 tcggcttata ctcgtgtccg tgagtattat gattggtttt ggtgtccttt acatcttctt 
      961 tggcgcaatg cacctgaagt tattgcacag attcaacaga atgtacaaca tgcttcttct 
     1021 tatgatggta gtgttttgtt gggttctaat atgccttgtg tgagtttgtc gcaactttct 
     1081 aagcttcttt cttccttaaa aggcaagaaa aattattttg gttttgatcg ttcggatttg 
     1141 gcttataaga ttcttcagta tttacgatat ggtaatgtgc aaacttcgtc gtctacttca 
     1201 ggcaagaatt ttggtacttc aattcctctt tctgataggt cttattctca ggattacgta 
     1261 tttaaccacg cacttagtat tttccccctt cttggttata agaagttttg tcaggactat 
     1321 tttcgtttta ctcaatggca ggattctgcg ccttatcttt ggaacattga ctattatgac 
     1381 gctaagaaat ctactagtat tttgcctgat actttttcta cttcttatct tactcataat 
     1441 actttgatag atatggagta ttgtaattgg aataaggata tgttttttgg tgtcttgcct 
     1501 gatgcgcaat acggtgatgc ttcggttgtt gatatttcgt ttggtatgtc tggtcaaact 
     1561 gttgttgcca gtccgagtga tatctcttct cggtatacta tttctaatcc ttctgatagc 
     1621 tctaccccta atttgtcggg ttctcctctt gttcttgatg ttcttgcact tcgtcgtggt 
     1681 gaagctctcc agcgttttcg tgagatttcg ttgtgtactc ctgctaatta tcgttcacag 
     1741 attaaggcgc attttggtgt tgatgttggt tccgaattat ctggcatgtc tacttatata 
     1801 ggtggtgaag cttcttcttt ggatatttcc gaggttgtta acaccaatat tactgaatct 
     1861 aatgaggctt tgatagctgg taaaggtatc ggtactggtc aatttagcga taaattttat 
     1921 gctaaagatt ggggtatttt gatgtgtatt taccattctg ttcctcttct tgattatgtt 
     1981 ttgacgtctc cggatcctca gttgtttctt agtgaaaata cttctttccc ggttccagaa 
     2041 cttgatgcaa ttggtttgga gtctattcct ttgtcttgtt attctaattc ttccttggaa 
     2101 atacctatca ctaaccctaa tgttgatgct gcttctttaa ctatgggata tcttcctagg 
     2161 tattatgctt ggaaaacttc gttagattat gtattgggtg cttttactac taccgaaaaa 
     2221 gagtgggtgg ctcctattac tgcttctctt tggtcaaaaa tgttactgcc tgtaactgtt 
     2281 gacggttcag ggattaatta taatttcttt aaagttaatc cttctattct tgatcccatt 
     2341 tttttggtta atgctgattc tacttgggat actgatacgt ttttggttaa tgctgcattt 
     2401 gatattcgtg tagctcgtaa tttggattat gatggaatgc cttattagtt atgtctagaa 
     2461 aagtaaaaaa agagcgttac tcctcacgct tgagttataa ttatgattat gattcaaaaa 
     2521 agagtaaatt tgtcgttcgt gataaattgg ctgttctttc gtcttacgct gattcagatg 
     2581 gtgttttaca tgtgttgaat gatatttctt tgttgtttaa tcagcaacgg ttagagaatc 
     2641 gtctttcttc tactgaatta cgtgaaatgt ttaaccgcta ttctccaaat aaatcaaggt 
     2701 atttggcgca attggatgat gatactttgt tatctaccct taagtctagg catattcaat 
     2761 ctctttcaga gataaagtca tggactgaat attgtatcga aaactttgat agtttgttga 
     2821 aagcacaaca ggctaaagaa aatgaaattg atgatataca agaaacagtt gacgagcctt 
     2881 ctgccggctc ttcttctggc gctggtggct cttctgattg atagtttgaa ctcttgtcct 
     2941 tatgatcttg ctatttttgg cttgattggt tcggtttttg gttcttctat gtctgcccgt 
     3001 tctcaacgga aggctaatga gatgaatttt aaaattaacc aaatgaacaa tgagtttaat 
     3061 gctaaggaag ccgaaaaagc tcgtgctttt cagcttgata tgtggaataa ggagaatgcg 
     3121 tataatactc cctctgccca gcgtgaacgt atggaacagg caggttataa tgcatatatg 
     3181 aatcctgctg atgctggtag tgcttctggt atgtcttcta ccacttcagc ttctgcatct 
     3241 tctcctgctg ttatgcaggc aaccgacttc tcctctcttg gagaggtcgg tgtacgactt 
     3301 gcgcaggaat tgaaattatt ttctgaaaag aaaggtcttg atattcgtaa cttcagtctt 
     3361 aaggattatt tgaaggctca gattgataaa atgcgaggtg agactaattg gcgtaatctt 
     3421 tctcctgaag ctattcgttt taatattatg agtggtttgg aagctgcaaa aattcagatg 
     3481 gaaggtttaa aggagcagtg gatcaatcag aagtggagta ataatttgct tcgtgctaat 
     3541 gttgccaatt cccttcttga tgctgaaggt aagactgtta ttaacaaata tcttgaccag 
     3601 cagcaacagg ctgatttaaa tgttaaagcg gctcattatg aggaattatt gctacgcggt 
     3661 caacttcatt cgcgtgaggc tagagaatct ttgtctcgtg agcttttgaa ttacactcgt 
     3721 gcaaatggac aaaagatttc taataaggtt gcagaacgta ctgctaataa tcttatttat 
     3781 gccactaatg cagcgcatta ttatgaaggc acttataata tgtatcgcgg acgaaaggcg 
     3841 aaagaagatg ctgcctctga tttcatggga aatcaatggc aaaatcagct tacgggcgag 
     3901 atgcttaatt ctaagcgctg ggataatgaa atgcaggctt ggcgtgaagc tattaattct 
     3961 gctaatgctt tgctgcgtgg ttcgtctgat gttatggatt cttacaatac ttatgaaaac 
     4021 ggtcgctatg aacgtggtcg tccttatacg tctgactatg aagaatatga acaatttgat 
     4081 aaagcgagag gtacacgtcg taaaactcgc aaatataaac gttaaatact atttctaact 
     4141 tttttatcca tgtaattata gctctgttgt gaaacagggc tatttttgta tctatgcgaa 
     4201 gccttttctt ttgtgcgaag caaatcgggt ttcacatcta acccgattca accccctctc 
     4261 gtccgaaatc tgcaaaagtg acactaataa taatgctgtt ttatgttgta taacatataa 
     4321 aatagtttgt atgtgtctca aatagttctt atctttgtag cacgaaaaag gaaatagtat 
     4381 taatgtttta aattgttaaa ttatgaaaac taaaagtgta aaagagtatt ggtatcttgt 
     4441 tcgttgtcat tcaattggta gagaacctga atatgatttg gttttgaaaa ctcgtagtga 
     4501 tatgaagaag tacgttatag agcttcgtaa ggagtggtct tttgttgatg ctggtagagt 
     4561 tgatttttcg atttgatttt aatgcgctcg ggcggtggac cgctggctta aaccgcccct 
     4621 tcgcgcatat ttattaacca tatatatttt taaagttatg tatttattga tgaatgtaca 
     4681 aagtaaagat ggtgcgaaag caagtgcccc acaactggtg aacactgtta aggtgtcctt 
     4741 atgcgaactt gtagagcgtg agcttaagaa acaggaatgc gtagtcattt tccagaagat 
     4801 agaagagtgc gaccagtcag gtgttgaagt caagtcattt ggcgagctgt agcacgctag 
     4861 gctgcacaca aaacgcctgt gcacagcatt gcaagaaaat aattttttct tttttctttc 
     4921 cgacattgca tcacacaggc gttttgaata acttcaccaa gggttatttt attaaaaact 
     4981 gttaaatctt gcgcgtgcgt ttacgcgcgt gcattattta accgtttttg ataaaatgtt 
     5041 cattggtgga gttaggcaaa acatcctatc tttgcaattt cgtaaagatt aaaggaaaaa 
     5101 gtattttccc atctgcgcga agcgcaaatt aatagcaact ctgttgcgtg cgttagggat 
     5161 tggagagcgt accgtgtacg ccggaaagcc cgaccgcgta gcggtaacgc ccaaataaaa 
     5221 gatcttatgg ataatagagt atttaagtat tttaacaaat gtgagcatcc acgagtgatt 
     5281 caaaataaat atacaggaga atttgtaaag gtcgactgtg gacaatgccc ctattgtttg 
     5341 ataaaaaaag ctgacagagc cacacaaaag tgtgactttg taaaatataa tcataagtat 
     5401 tgttattttg tgactttgac atataacact caatacgtgc cgaaaatgtc gttgacgcaa 
     5461 attaatgact acatgtccga atggctgcct gcacggccgc cgaagtcggt tgtcgcgcag 
     5521 ctctccgcgt gcatgcttat ggattctcgc gtaaataaaa atattccgga ttttatgtct 
     5581 gcgaaggtga atcgccccta tatgcttgag catttgcgcc tccttgaggc ggaccgctac 
     5641 aaggcgttag cgctgcgcta tccgaatttt atttcgaagt ttcgtccgtt tattttacgc 
     5701 tctattcccc gtgtgtctaa gcttcagaat tttaaagatg aatattttga agagcttgtt 
     5761 tggatgcttc ccgaaattgc agaatcattg aaaaaaaaga acaatacaga tgctagtggt 
     5821 gctttcccac agtttaaagg attgttaaag tatgttaata ttcgtgatta tcaattgttt 
     5881 gctaaacgtt taagaaaata tttatcaaaa aaataggaaa atatgaaaaa attcattcgt 
     5941 acgttgtatc cgagtacagt ccaaagacct ttcgtccgca tttccatatc ctttttttct 
     6001 ttgactcgga tgaaatcgcc aaaaattttc gacaggctgt atatcagagt tggcggcttg 
     6061 gtcgtgtcga tacgcaactt gcgagggaac aggctaacag ttatgttgca aactatctca 
     6121 atagcgttgt atctattccc tttgtttata aagccaaaaa gtcaattcgc ccgcgctctc 
     6181 gattctctaa cctcttcgga tttgaagaag ttaaaaaagg aatccaacat gcttcggaca 
     6241 aaaggtctgc tttatttgat ggagtgcctt atatttcgaa tcaaaaattt gtccgatatg 
     6301 ttccctccgg gtcgcatatc gatagattat tcccccgatt tacccactat gatggttctt 
     6361 ttctacgaag gtcttctcaa atatatgaag ttgtgcaacg cgtattacga ctctttgccc 
     6421 gaaacgagcc ctttaagaaa gcaactccgc gaaatgtatc cgaatttgta tgttggtggt 
     6481 gtgagtacaa tttccgacga ggttgccaaa taaaggattt tcccgattat atgcaggtaa 
//
