FEATURES             Location/Qualifiers
     gene            complement(15..1508)
                     /locus_tag="Alpa_01"
     CDS             complement(15..1508)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MIKNSFCKCLHPKKIVNPYTNESMVVPCGHCQACMLAKNSRYAFQCDLESYVAKHTLFITLTYANRYIPRATFVDSLERPFGNDLVDKETGEILGPSDMKQEDIDRLLNKFYLFGDVPYLRKTDLQLFFKRLRYYVSKQCPSEKVRYFAVGEYGPVHFRPHYHILLFLQSDEALQVCSENISQAWTLGRIDCQISKGQCSSYVASYVNSSCTIPKVFKLSSVCPFNVHSQKLGQGFLDCQREKIYSSTPQNFVKRSIVLNGKYKEFDVWRSCYAYYFPRCKGFASKSSRERAYSYGIYDTARRLFSSSETTFSLAKEIAFYIKHFHFTDDTYLLDLFGHVSDQKSLLDLSNYFLDRDAMVRPVESDEFNRWVHRIYTELLVSKHFLYFVCTHTTLAERKSKQRMIEEFYSYLDYMHLTTFFESQQEFYESDLIGDDDLCTDQWENSYYPYFYYNVHTNEPFEKTPVYRLYASDVKKLFNDRIKHKKLNDANKIFIDE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1715..1873)
                     /locus_tag="Alpa_02"
     CDS             complement(1715..1873)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEAKGFVYVVVFQNSLDERVAHVYTGTFDRVFKKAKSLCSSSNYFIREIKVV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1875..2105)
                     /locus_tag="Alpa_03"
     CDS             complement(1875..2105)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MSAKKGKWIERFNQKNDFDFTVSRVIVTRVAYVRVIKLIPITRFSLFGITVTEAMKIARSFNTLADHVCMITLIED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_008775332.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2630..3703)
                     /locus_tag="Alpa_04"
     CDS             complement(2630..3703)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MAIGASAATLLGSGILGASAIGSTVAGNKGNASIAQQNNAFNEKMLQKQMDYNTQMYQQQLGDQWQFYNDAKQNSWDMFNAANDYNSASAQRERLEAAGLNPYLMMSGGNAGTATAQSSPQASSPSAQGVTPPTATPYSADYSGITQGLGMVLDKIATQPDRDVKSAEADNLRIEGKYKAAKTIAEIVQMRTNAKTQEGRLALDKLIYSIDKDLKSSQMDVNRESIANMQAERKLTNVQTLLVDKQLSWMDAQSKMDLAQKAADIQLKYAQGALTRKQVDHEIAKIAETEVRTSLDIQEQTTNVLKQQGMRQENSFNEATFDNRVKSVKESLWNLMHEADSYGLSKTIGRVIRPLYD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:WP_008775338.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 20 and 21"
     gene            complement(4041..4511)
                     /locus_tag="Alpa_05"
     CDS             complement(4041..4511)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MFAKRRIEPYVTPVNPSPVSAKDMLCSEFRQESPIDQFLFEEFEFDGVKSVRLTSDIYMLFNQQRLDRLSRESLLSHFESMSVNEPKFGDLRAKLGDDQLISFVKSRFIQSPSELMAWSQYLMSSSDVVVAELAAVQQEQQSQQSQQSSESSASTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4545..6134)
                     /locus_tag="Alpa_06"
     CDS             complement(4545..6134)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="LNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTDLSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYSDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAALINSRITSSNSTTTLRFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 aaaagtttta acaattattc gtcaatgaat atcttattag catcattgag tttcttatgc 
       61 ttaatacgat cattaaaaag tttcttaaca tccgaagcat acaaacgata cacaggggtt 
      121 ttctcaaaag gttcattcgt atgaacatta taatagaaat aaggataata agaattttcc 
      181 cattgatcag tacaaagatc atcatcacca atcaaatcac tctcataaaa ttcctgctga 
      241 gattcaaaga atgtagtaag gtgcatataa tcaagatatg agtagaattc ctcaatcata 
      301 cgctgtttag acttacgttc agcaagggtg gtatgagtgc aaacaaaata caagaaatgt 
      361 ttagagacaa gtaactcagt atagatccga tgaacccaac gattaaattc atccgactct 
      421 acaggtcgaa ccatagcgtc acgatcaaga aaataattag aaagatcaag caaagacttc 
      481 tgatctgata catgtccaaa caaatcaagt aagtaagtat catccgtaaa atgaaaatgt 
      541 tttatataaa aagctatttc tttcgcaaga gaaaacgtcg tttctgagga cgagaataaa 
      601 cgcctcgctg tatcataaat tccataagag taagcacgtt cacgtgaaga tttagaagca 
      661 aatcctttac accggggaaa gtagtaagcg taacacgacc gccatacgtc aaactcttta 
      721 tatttgccat tgagtacgat gcttctttta acaaagttct gaggggtaga tgagtatatc 
      781 ttctcacgtt gacagtcaag aaagccttga cccaatttct gagaatgaac gttgaacgga 
      841 cagacggaac taagtttaaa aactttgggt atagtgcaac tgctattaac atagctcgca 
      901 acgtatgatg aacactgacc tttggatatt tgacagtcga tacgaccaag ggtccatgct 
      961 tgagatatat tctctgaaca tacctgtaac gcttcgtctg attggaggaa taataagata 
     1021 tgataatgcg ggcggaaatg gacgggtcca tattctccga cagcaaagta acgcactttt 
     1081 tccgagggac attgttttga gacataataa cgtaatcttt taaaaaataa ttgtaaatca 
     1141 gttttacgaa gataggggac atctccaaag agatagaact tatttaataa acgatcaata 
     1201 tcttcttgtt tcatatcaga tggaccaaga atttcacctg tttccttatc tacaagatca 
     1261 ttaccaaatg ggcgttcaag actatctaca aaagtagcac gaggaatata acgattagca 
     1321 taagtaagag ttataaacaa tgtgtgctta gcaacataag attcaagatc acactgaaag 
     1381 gcataacgtg agtttttagc caacatgcat gcctgacagt gaccacaagg aacaaccata 
     1441 gattcgttag tataaggatt aacgattttc ttaggatgaa gacacttaca aaaagaattt 
     1501 ttaatcatat cagaacttag gagcaaagtt aatatgagta gaatctactg aactagtagt 
     1561 agtctgttcc gttttctgag tactattcga gttgttcttc gaaacagata aagacactgt 
     1621 gcaggattgc acaaacaaaa ttgcggaaat tgaaagaatc gcagtaacga cgatcttaat 
     1681 gatgtcatag atttgttgat tagaaagttt catattaaac gactttaatt tcacgaataa 
     1741 aataattaga agaagagcaa agagactttg cttttttaaa tactcgatca aaagtacctg 
     1801 tataaacatg agcaacacgc tcatcaagag agttttgaaa aactacaacg taaacaaatc 
     1861 ctttagcttc catatcaatc ttcaattaaa gttatcatac aaacatgatc agcaagcgta 
     1921 ttaaaagatc tagcgatctt catagcttct gtaacagtaa taccaaaaag agaaaaccta 
     1981 gtaataggaa tcaacttaat aacacggaca taagcaacac gagtaacaat aacacgggat 
     2041 accgtgaaat caaaatcgtt tttctgatta aaacgttcaa tccattttcc ttttttcgca 
     2101 gacatattca aataggtttt aaatttctgc tgcaaataaa gggaataatt atcattatga 
     2161 caatataata gaagttaatg ataactaata tatgttatat aataattgaa atcctcatga 
     2221 taaatataga taaacatacg aggaatacca ttaacaacta tatctaggaa ctgatactgg 
     2281 tacaaataaa ccggagaaag attccgaagg aaatcgaata tttcaatcag atcatgaaag 
     2341 aggataggac aacctttaat ataacaattc atatgtaatt atattttaat cctgtcattt 
     2401 ttcgtataat aggacaagaa aaaaggatag ccgagtggat taatcggcta cccttcggga 
     2461 aaatgacatg ggtgttactt aaataaagat ttgataaatt taccaaacaa ataaacacac 
     2521 aaaatcaaaa cagctaaaat aatcagccat tcactaccag caggcaaaaa gcctaaatat 
     2581 aaacatttca taacttaaaa tatttggtta atcacgcaaa tataataaat taatcataaa 
     2641 gaggacgaat aacacgacca atagtcttag aaaggccata cgaatcagct tcatgcataa 
     2701 gattccaaag agattcctta acagacttaa cacggttatc aaacgtagcc tcattaaaag 
     2761 agttttcctg tctcataccc tgttgtttca aaacattagt agtctgttcc tgaatgtcaa 
     2821 gagaagtacg aacttctgtc tcagcaatct tagcaatctc atgatctacc tgtttacgag 
     2881 tcaatgcacc ttgtgcatac ttaagctgaa tatcagcagc tttctgggca agatccatct 
     2941 tactctgagc atccatccaa gaaagctgct tatcaacaag aagagtctgg acattcgtta 
     3001 atttacgctc agcctgcata ttagcaatac tttcacgatt aacatccatc tgagaagatt 
     3061 taagatcctt atcaatagaa tagatcaact tatcaagagc aagacgacct tcttgtgtct 
     3121 tagcattcgt acgcatttgc acaatctcag cgattgtctt agcggcctta tacttacctt 
     3181 caatacgaag attatcagct tctgcactct taacatcacg atccggctga gtagcaatct 
     3241 tatccaatac cattccaaga ccttgagtaa taccagaata atctgcagaa tacggagtag 
     3301 cagtaggagg agttacacct tgagcagaag gagatgaagc ctgaggagaa gattgagcag 
     3361 tcgcagtacc tgcatttcct ccggacatca ttaaataagg attcaaacca gcagcttcta 
     3421 aacgttcacg ttgagcagaa gcagaattat aatcatttgc tgcattaaac atatcccaag 
     3481 aattctgttt agcatcatta taaaattgcc actgatcacc aagttgttgt tggtacatct 
     3541 gtgtattata atccatctgt ttctgtaaca tcttttcatt gaaagcatta ttctgttgag 
     3601 caatactagc attaccttta ttaccagcaa cagtagaacc aatagcagaa gcaccaagaa 
     3661 tacctgaacc aagcaatgta gcagcacttg caccaatagc cataataata aaaattaaat 
     3721 taaacaatac gcaacaaagt tgcgattaat ttgcgtttca cgcagagata aggtttaggt 
     3781 taaaaaaatt aaggggagac tgatcgcaag cccgtttttc agttttccat gtctgagact 
     3841 cagaaagatc ttaaggacag aattttttta acggagccgg acagctcccc ccaaaggggc 
     3901 cccccatcgc gcgcagacct gatcttttat cgcacgcgca cgcaaaaaaa aggacgcgca 
     3961 cgtacgtaaa ataatactaa agtcaataaa agtaatattt tttgagacaa aattaatatt 
     4021 aaatctcaaa tattttatta ttactcagta gacgcagaag attcagaaga ctgttgagat 
     4081 tgttgagact gttgttcctg ttgaacagca gcaagttcag caacaacaac atcagaagaa 
     4141 ctcatcaaat actgactcca agccatcaac tcagaaggag attgaataaa gcgagacttc 
     4201 acaaagctaa tcaactgatc atcaccaagt tttgcacgaa gatcaccaaa cttaggttca 
     4261 ttaaccgaca tagattcaaa atgagacaag agagattcac gagacaaccg atcaaggcgc 
     4321 tgttgattaa acaacatata aatatcagaa gtcaaacgaa cacttttcac accatcaaat 
     4381 tcaaattctt caaacaggaa ttgatcaata ggggattctt gacgaaactc agaacaaagc 
     4441 atatcctttg cagaaaccgg actaggatta accggtgtta catacggttc aatacgacgt 
     4501 tttgcaaaca taacaataaa gttaaaaagt taaacaatag gggattaata aggtaaacca 
     4561 tccgtatcaa gattacggac taccttcaca tcaaagaaag tactacaaag gaactgatca 
     4621 gtatcaatac tagaatcagc ttctacagca aaaagaggat tcaaagaatt aggattaacc 
     4681 ttaaacaagg tatagttcca actagaatta gcaggattag gaacaggtga ctcaggagtt 
     4741 tcaacagaat aaccgaattg attagcaagc gattgattat cataagaaat aacccaattc 
     4801 ttcaaagacg ttttaaacgc accaatagaa gtatcaatat ctgtcttata atcaatataa 
     4861 cgaggagcgt aaccgatctc attaggaata gacaaaggca aaacagacaa aggaccatta 
     4921 gaaacataag acaaagggac tgtctgcata ccaactcgat caaactcggg aatggcaaaa 
     4981 tcagcagcat taacacgagt aacagacgga ctaacaaaat cagtagtata atcaatcaaa 
     5041 ggcaagcaat gatagataca cattacaacg ccataacgac cttgtgaatt gaaattgatc 
     5101 acaccattag aaacaccagt accttttcct gcaatatcag cagcattaga acctgtaata 
     5161 ttctgattca ctacttcatt aatatccagc gaactagaaa taccaccaag ataagtacac 
     5221 atttcagaga agccgtcacc aggagaaaca ttccaatgtt tttctacttg ttctttataa 
     5281 tccttgttac cagactgagt aatttctttc catttctgta aaaattcagc ttgacggaga 
     5341 gcaagaatac taaaagaagg atgagttaaa agaggcgtag catcaggaat agcaggatca 
     5401 gtagggaagc gaagagtagt agtagaattc gaagaagtta tcctagaatt aattaaagca 
     5461 gcagaactac cagcaacaac cggaacagac atagaaatac tagccacatc accatactgt 
     5521 tgattaggaa cgacaccgtg gaataaatcc ttttgccagt tacaataccg aagatcaaac 
     5581 atactgtaat tctcatagaa atcagagtag ttaaaagaaa gcatcattcc agaagaacca 
     5641 gtactataag gcatatagtc cacgttaaag caagaaggac ttacacgttc ccattgagag 
     5701 tcacgatagt aatcagcata aattttctga taagcaagaa gattaaacaa agacacattc 
     5761 aagttataat gcaaaggtct tttagcaaaa gtattactag tagattctgc ataataatac 
     5821 aaattaccat aaccaagaca ttccattaac ttagcagaac aaagagcacg attataacca 
     5881 aaataattag ccttattcgt aacagcagtt gaattagaag caagagaatt caaataacga 
     5941 gaaatgctag aaagatcagt aaaaggcata gagccatcaa gcttaacaac attcaaagga 
     6001 ctagaatcca atgcatgttg aggattgtca tacatctgag taagagaagt attcgcctta 
     6061 ttccaaagaa gatcataagg aacaaaatag aaatcataat actctctcat acgagcaaat 
     6121 gcagcagtat tcaaaggttg agtacgagta aacgatttaa gatcaatctt aaacgtatca 
     6181 ccgggaagaa cttcccaagt tttaacaggg agaagctcac ctgctttc 
//
