bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-11_CDS_annotation_glimmer3.pl_2_4

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fnu:FN1484  hypothetical protein                                    33.5    3.5
  mdm:103440342  protein NRT1/ PTR FAMILY 8.1-like                    33.1    5.3
  fnc:HMPREF0946_01174  hypothetical protein                          32.3    8.5
  mdm:103428617  protein NRT1/ PTR FAMILY 8.2-like                    32.3    9.4


> fnu:FN1484  hypothetical protein
Length=245

 Score = 33.5 bits (75),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 14/36 (39%), Positives = 22/36 (61%), Gaps = 0/36 (0%)

Query  24   IIKIMQKFIISVKEKQTGRDVIPPYIVNSLEGLGHY  59
            I+KI   F+I +KE +   D++  YIVN+ + L  Y
Sbjct  183  IVKIYANFLIDIKEYRKAEDILMKYIVNNEDNLDEY  218


> mdm:103440342  protein NRT1/ PTR FAMILY 8.1-like
Length=663

 Score = 33.1 bits (74),  Expect = 5.3, Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query  8    IPLRRIEVTAIINALKIIKIMQKFIISVKEKQTGRDVIPPYIVNSLEGLG  57
            IP   + V A INAL +I + +KFI+ +  K+TG     P  + SL+ +G
Sbjct  465  IPPGSVPVFAAINALILIPLYEKFIVPIIRKRTGH----PRGLTSLQRMG  510


> fnc:HMPREF0946_01174  hypothetical protein
Length=265

 Score = 32.3 bits (72),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 0/36 (0%)

Query  24   IIKIMQKFIISVKEKQTGRDVIPPYIVNSLEGLGHY  59
            I+KI   F+I +KE +   D++  YIVN+   L  Y
Sbjct  203  IVKIYANFLIEIKEYRKAEDILMKYIVNNENNLDEY  238


> mdm:103428617  protein NRT1/ PTR FAMILY 8.2-like
Length=325

 Score = 32.3 bits (72),  Expect = 9.4, Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query  8    IPLRRIEVTAIINALKIIKIMQKFIISVKEKQTGRDVIPPYIVNSLEGLG  57
            IP   + V A INAL +I + +KFI+ +  K+TG     P  + SL+ +G
Sbjct  127  IPPGSVPVFAAINALILIPLYEKFIVPIIRKRTGH----PRGLTSLQRMG  172



Lambda      K        H        a         alpha
   0.319    0.140    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127599116940