bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-11_CDS_annotation_glimmer3.pl_2_6

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101314332  capsid protein VP1-like                              42.7    0.13


> fve:101314332  capsid protein VP1-like
Length=421

 Score = 42.7 bits (99),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query  199  ALPFLAYQKIYYDFFSNSQWEKHKAYAYNVDYWSGAG-NIGLVTDMVQLRYANYPKDYFM  257
            ALP  AY  IY      +QW + +    +V    G G +    T+   LR      DYF 
Sbjct  177  ALPVRAYNLIY------NQWFRDENLQNSVVVDKGDGPDTTPSTNYTLLRRGKR-HDYFT  229

Query  258  GMLPSSQYGSVAV-LP-------SISSSSDSRSLLYYEPSSSATAALQSAGGSSSSVRLS  309
              LP  Q G  AV LP       + S +S S   +      +    + S G  +S    S
Sbjct  230  SALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTTQGNLIKNMYSTGSGTSLKIGS  289

Query  310  QTVSSSQGIRLNSDLSALSIRATEYLQRWKEIVQFSSKD------YSDQMAAQFGIKAPE  363
             TV++     L +DLSA +      L++  +I +   +D      Y++ + + FG+ +P+
Sbjct  290  ATVATG----LYADLSAATAATINQLRQSFQIQKLLERDARGGTRYTEIIRSHFGVASPD  345

Query  364  YMGNHSHYIGGWSSVINI  381
                   Y+GG S+ INI
Sbjct  346  ARLQRPEYLGGGSTPINI  363



Lambda      K        H        a         alpha
   0.315    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 987387445760