bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-13_CDS_annotation_glimmer3.pl_2_1

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  lki:LKI_09985  transcriptional regulator; repressor of sugar tr...  37.7    2.6
  lec:LGMK_02425  putative transcriptional regulator; repressor o...  37.7    2.6
  sol:Ssol_1204  DNA-directed RNA polymerase subunit B                37.4    4.6


> lki:LKI_09985  transcriptional regulator; repressor of sugar 
transportoperon
Length=329

 Score = 37.7 bits (86),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (49%), Gaps = 10/78 (13%)

Query  206  FAQKSIGKTVA------WVDYMTNYNKNYGNFASGENENFMTLDRNYNVENPDFTTYIDP  259
            FA KS  K ++      +VDY T  N  Y  F S +  NF+   R++ +EN     +   
Sbjct  172  FASKSPIKDISSVRQQGFVDYCTENNLTYDTFLSRDIPNFIDDFRDFILENKSDHAF---  228

Query  260  AKYNGIFADQSRSSMNFW  277
             KY+G+F+D    +  FW
Sbjct  229  -KYDGVFSDSDEYANAFW  245


> lec:LGMK_02425  putative transcriptional regulator; repressor 
of sugar transportoperon
Length=333

 Score = 37.7 bits (86),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (49%), Gaps = 10/78 (13%)

Query  206  FAQKSIGKTVA------WVDYMTNYNKNYGNFASGENENFMTLDRNYNVENPDFTTYIDP  259
            FA KS  K ++      +VDY T  N  Y  F S +  NF+   R++ +EN     +   
Sbjct  176  FASKSPIKDISSVRQQGFVDYCTENNLTYDTFLSRDIPNFIDDFRDFILENKSDHAF---  232

Query  260  AKYNGIFADQSRSSMNFW  277
             KY+G+F+D    +  FW
Sbjct  233  -KYDGVFSDSDEYANAFW  249


> sol:Ssol_1204  DNA-directed RNA polymerase subunit B
Length=1124

 Score = 37.4 bits (85),  Expect = 4.6, Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 17/124 (14%)

Query  35   GINAITAVDTSIGSFTMDTLNLAKKVYNMLNRIAVSDGTYKSWMETVFSAKYVERTETPI  94
            G NAI AV +  G    D++        ++NR +V  G Y+S    ++S      TE   
Sbjct  719  GNNAILAVMSFTGYNMEDSI--------IMNRSSVERGMYRSTFFRLYS------TEEVK  764

Query  95   YYGGMSQEIIFEEVVSTSATGEEPLGTLAGKGRLAP--NKKGGKVVI-KIDEPSYIIGIC  151
            Y GG   +I+  E       G+E    L   G ++P    KGG V+I K+  P ++    
Sbjct  765  YPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFK  824

Query  152  SITP  155
             ++P
Sbjct  825  ELSP  828



Lambda      K        H        a         alpha
   0.315    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 505086094880