bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-18_CDS_annotation_glimmer3.pl_2_3

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  psn:Pedsa_1494  ribonucleoside-diphosphate reductase (EC:1.17.4.1)  42.4    0.40
  alv:Alvin_2866  hypothetical protein                                37.0    2.5
  cyj:Cyan7822_5577  hypothetical protein                             37.7    5.4


> psn:Pedsa_1494  ribonucleoside-diphosphate reductase (EC:1.17.4.1)
Length=854

 Score = 42.4 bits (98),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 47/199 (24%), Positives = 80/199 (40%), Gaps = 26/199 (13%)

Query  330  LKNIDEERTAILAAPSTAAYTVPNIRMPYGAATGGLTLPNYNRTRTYVSANSWFSQAGLA  389
            +  ID+E+  ++       + + +IR P G+                   NS  +  GL 
Sbjct  128  IMKIDQEQIQLMKRRGGVGHDLSHIR-PKGSPV----------------KNSALTSTGLV  170

Query  390  VKTYLSDRFNNWLNTEWIDGTTGGINAITAVDVSDGKLTMDALILQKKIFNMLNRVAITD  449
                  +R++N       DG  G +    +++  D +  +DA + Q K+      V ITD
Sbjct  171  P---FMERYSNSTREVAQDGRRGALMLSVSIEHPDAERFIDAKMEQGKVTGANVSVRITD  227

Query  450  GTYQA-WREATYGIRSTTLPESPIFCGGMQSEIAFDEIVSNAATDEEP----LGTLAGRG  504
               QA  +++ +  R     E PIF   ++++  +D+IV NA    EP      T+    
Sbjct  228  AFMQAVEKDSDFVQRYPIGAEKPIFSNKIKAKELWDKIVHNAWRSAEPGILFWDTIINES  287

Query  505  VATMYKSGRGLKIKCTEPC  523
            V   Y +  G K   T PC
Sbjct  288  VPDCY-ADLGYKTVSTNPC  305


> alv:Alvin_2866  hypothetical protein
Length=89

 Score = 37.0 bits (84),  Expect = 2.5, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 37/84 (44%), Gaps = 4/84 (5%)

Query  495  EPLGTLAGR-GVATMYKSGRGLKIKCTEPCMIMALG--SITPRIDYSQGNKWWTRLQNMD  551
            E L T   R  V  M  +GRGL+    E     A G       +  S+G KW       +
Sbjct  6    ETLMTFPCRFAVKAMGPAGRGLEAVVVEIVSRHAEGVDETAISVRESRGGKWIAVTLTFE  65

Query  552  DFHKPTLDAIGFQELIAEEAAAWS  575
               KP LDAI +QEL A E  AW+
Sbjct  66   AHSKPQLDAI-YQELSAHELVAWA  88


> cyj:Cyan7822_5577  hypothetical protein
Length=212

 Score = 37.7 bits (86),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 21/114 (18%)

Query  496  PLGTLAGRG------VATMYKSGRGLKIKCTEPCMIMALGS--ITPRIDYSQGNK-----  542
            PLG   GR         +++ S RG+ I  T+ C     G+  + P + Y  G+K     
Sbjct  48   PLGNDHGRDHLIIIIAVSLFASLRGIPINGTDNCTYRKTGTHQMQPDVSYYIGDKANIIP  107

Query  543  WWTRLQNMDDFHKPTLDAIGFQELIAEEAAAWSTEATGNHELVYQSLGKQPSWI  596
            W T + ++D +  P        +L+ E A     +  G   L+Y+ L  Q  WI
Sbjct  108  WGTSIVDLDVYPPP--------DLVIEVANTSLADDKGEKRLLYEDLNIQEYWI  153



Lambda      K        H        a         alpha
   0.317    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1614256542964