bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-18_CDS_annotation_glimmer3.pl_2_6

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  clp:CPK_ORF00729  hypothetical protein                              40.8    0.056
  cpt:CpB0227  hypothetical protein                                   40.4    0.080
  cpj:CPj0222  hypothetical protein                                   40.4    0.080
  cpa:CP0543  hypothetical protein                                    40.4    0.080
  cpn:CPn0222  hypothetical protein                                   40.4    0.080
  syj:D082_09110  Transcriptional regulator PchR                      39.7    0.50


> clp:CPK_ORF00729  hypothetical protein
Length=121

 Score = 40.8 bits (94),  Expect = 0.056, Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (52%), Gaps = 1/52 (2%)

Query  27  RLRWIQIPCGHCEECRRAKANEWRVRLMEEIKSYPKNIIFATLTFSEESLKK  78
           R RW+ +PC  C  CR   A  W  R + E   Y KN  F TLT+ ++ L +
Sbjct  16  RNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKN-CFLTLTYDDKHLPQ  66


> cpt:CpB0227  hypothetical protein
Length=113

 Score = 40.4 bits (93),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (52%), Gaps = 1/52 (2%)

Query  27  RLRWIQIPCGHCEECRRAKANEWRVRLMEEIKSYPKNIIFATLTFSEESLKK  78
           R RW+ +PC  C  CR   A  W  R + E   Y KN  F TLT+ ++ L +
Sbjct  16  RNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKN-CFLTLTYDDKHLPQ  66


> cpj:CPj0222  hypothetical protein
Length=113

 Score = 40.4 bits (93),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (52%), Gaps = 1/52 (2%)

Query  27  RLRWIQIPCGHCEECRRAKANEWRVRLMEEIKSYPKNIIFATLTFSEESLKK  78
           R RW+ +PC  C  CR   A  W  R + E   Y KN  F TLT+ ++ L +
Sbjct  16  RNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKN-CFLTLTYDDKHLPQ  66


> cpa:CP0543  hypothetical protein
Length=113

 Score = 40.4 bits (93),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (52%), Gaps = 1/52 (2%)

Query  27  RLRWIQIPCGHCEECRRAKANEWRVRLMEEIKSYPKNIIFATLTFSEESLKK  78
           R RW+ +PC  C  CR   A  W  R + E   Y KN  F TLT+ ++ L +
Sbjct  16  RNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKN-CFLTLTYDDKHLPQ  66


> cpn:CPn0222  hypothetical protein
Length=113

 Score = 40.4 bits (93),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (52%), Gaps = 1/52 (2%)

Query  27  RLRWIQIPCGHCEECRRAKANEWRVRLMEEIKSYPKNIIFATLTFSEESLKK  78
           R RW+ +PC  C  CR   A  W  R + E   Y KN  F TLT+ ++ L +
Sbjct  16  RNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKN-CFLTLTYDDKHLPQ  66


> syj:D082_09110  Transcriptional regulator PchR
Length=329

 Score = 39.7 bits (91),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (10%)

Query  113  LITEMGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWIFFGYEVSEKTINY--IVKYVTKR  170
            L T +GH +T+R  L   IW +L +++F + W            E  + +  ++      
Sbjct  40   LPTYLGHGHTRRFELSSGIWLDLIDKEFTQPWA-----LKMPAHEHLVQFTILLSGAVDY  94

Query  171  DEANPEFNGKI--FTSKGIGIGYINKNSLNKH  200
            DE  P    K+  F+  GI  GY+ +    +H
Sbjct  95   DETYPTLGAKMGYFSGSGISPGYVARYGRLRH  126



Lambda      K        H        a         alpha
   0.317    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515377810992