bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-20_CDS_annotation_glimmer3.pl_2_4
Length=322
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 42.7 0.014
cpt:CpB0227 hypothetical protein 41.6 0.032
cpj:CPj0222 hypothetical protein 41.6 0.032
cpa:CP0543 hypothetical protein 41.6 0.032
cpn:CPn0222 hypothetical protein 41.6 0.032
hna:Hneap_0491 group 1 glycosyl transferase 37.7 3.9
ccq:N149_0219 DNA modification methylase (Adenine-specific met... 37.4 4.0
ccc:G157_07590 D12 class N6 adenine-specific DNA methyltransfe... 37.4 4.0
pyo:PY01999 hypothetical protein 37.7 4.0
ccy:YSS_08550 DNA modification methylase 36.6 5.9
ccf:YSQ_08820 DNA modification methylase 36.6 6.1
ccoi:YSU_07800 DNA modification methylase 36.6 6.2
ccv:CCV52592_1677 DNA modification methylase 36.6 7.3
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/112 (28%), Positives = 52/112 (46%), Gaps = 12/112 (11%)
Query 27 PDE-RLRYVTAACGECYECRKQKQRAWVTRMTEELKQNPNAGFYTLTIDDEHYKKLSKEC 85
P+E R R+V C +C CR Q + W R E F TLT DD+H +
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYG--- 68
Query 86 KSKDENTIATYALRMFLERIRKKLKKS-VKHWCITELGHEKSERLHLHGIFW 136
++ L++FL+R+R ++ ++++ E G K +R H H + +
Sbjct 69 ------SLVKLHLQLFLKRLRDRISPHKIRYFGCGEYG-TKLQRPHYHLLIF 113
> cpt:CpB0227 hypothetical protein
Length=113
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 39/84 (46%), Gaps = 10/84 (12%)
Query 27 PDE-RLRYVTAACGECYECRKQKQRAWVTRMTEELKQNPNAGFYTLTIDDEHYKKLSKEC 85
P+E R R+V C +C CR Q + W R E F TLT DD+H +
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQY---- 67
Query 86 KSKDENTIATYALRMFLERIRKKL 109
++ L++FL+R+RK +
Sbjct 68 -----GSLVKLHLQLFLKRLRKMI 86
> cpj:CPj0222 hypothetical protein
Length=113
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 39/84 (46%), Gaps = 10/84 (12%)
Query 27 PDE-RLRYVTAACGECYECRKQKQRAWVTRMTEELKQNPNAGFYTLTIDDEHYKKLSKEC 85
P+E R R+V C +C CR Q + W R E F TLT DD+H +
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQY---- 67
Query 86 KSKDENTIATYALRMFLERIRKKL 109
++ L++FL+R+RK +
Sbjct 68 -----GSLVKLHLQLFLKRLRKMI 86
> cpa:CP0543 hypothetical protein
Length=113
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 39/84 (46%), Gaps = 10/84 (12%)
Query 27 PDE-RLRYVTAACGECYECRKQKQRAWVTRMTEELKQNPNAGFYTLTIDDEHYKKLSKEC 85
P+E R R+V C +C CR Q + W R E F TLT DD+H +
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQY---- 67
Query 86 KSKDENTIATYALRMFLERIRKKL 109
++ L++FL+R+RK +
Sbjct 68 -----GSLVKLHLQLFLKRLRKMI 86
> cpn:CPn0222 hypothetical protein
Length=113
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/84 (31%), Positives = 39/84 (46%), Gaps = 10/84 (12%)
Query 27 PDE-RLRYVTAACGECYECRKQKQRAWVTRMTEELKQNPNAGFYTLTIDDEHYKKLSKEC 85
P+E R R+V C +C CR Q + W R E F TLT DD+H +
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQY---- 67
Query 86 KSKDENTIATYALRMFLERIRKKL 109
++ L++FL+R+RK +
Sbjct 68 -----GSLVKLHLQLFLKRLRKMI 86
> hna:Hneap_0491 group 1 glycosyl transferase
Length=867
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/79 (32%), Positives = 33/79 (42%), Gaps = 1/79 (1%)
Query 26 CPDERLRYVTAACGECYECRKQKQRAWVTRMTEELKQNPNAGFYTLTIDDEHYKKLSKEC 85
PD+R + Y+ RK Q A V KQNPN G TI+ EH+K+ E
Sbjct 652 LPDDRQLALVMYDFHSYQYRKNPQAA-VEAFRIAAKQNPNLGLVLKTINSEHHKEAYAEL 710
Query 86 KSKDENTIATYALRMFLER 104
K + Y + F R
Sbjct 711 KESVADLPHVYFIDEFFSR 729
> ccq:N149_0219 DNA modification methylase (Adenine-specific methyltransferase)
(EC:2.1.1.72)
Length=367
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (41%), Gaps = 20/140 (14%)
Query 13 YCSTKKNKGVIPPCPDERLRYVTA--------ACGECYECRKQKQRAWVTRMTEE-LKQN 63
+C GV+ Y+ A +CY K K + + + L QN
Sbjct 44 FCDIFSGSGVVSRFAKAHSNYILANDLENYSKLINKCYLSNKDKNLTELLKHYHKILTQN 103
Query 64 P--NAGFYTLTIDDEHYKKLSKECKSKDENTIATYALRMFLERIRKKLKKSV----KHWC 117
AGF + E Y ++ C KDE T ++L+ +R+K++K + KH+
Sbjct 104 LEFQAGFIS-----ELYAPKNEACIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFF 158
Query 118 ITELGHEKSERLHLHGIFWG 137
I L +E S + G+F G
Sbjct 159 IAPLIYEASVHSNTSGVFKG 178
> ccc:G157_07590 D12 class N6 adenine-specific DNA methyltransferase
Length=367
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (41%), Gaps = 20/140 (14%)
Query 13 YCSTKKNKGVIPPCPDERLRYVTA--------ACGECYECRKQKQRAWVTRMTEE-LKQN 63
+C GV+ Y+ A +CY K K + + + L QN
Sbjct 44 FCDIFSGSGVVSRFAKAHSNYILANDLENYSKLINKCYLSNKDKNLTELLKHYHKILTQN 103
Query 64 P--NAGFYTLTIDDEHYKKLSKECKSKDENTIATYALRMFLERIRKKLKKSV----KHWC 117
AGF + E Y ++ C KDE T ++L+ +R+K++K + KH+
Sbjct 104 LEFQAGFIS-----ELYAPKNEACIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFF 158
Query 118 ITELGHEKSERLHLHGIFWG 137
I L +E S + G+F G
Sbjct 159 IAPLIYEASVHSNTSGVFKG 178
> pyo:PY01999 hypothetical protein
Length=1688
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query 204 NKFKGEDTNE-TYRLPNGAKINLPIYYRNKIYS--EKEREAL-FLSK-------VEKGIV 252
N+F + N+ T L N KIN+ N I S + E+E FLS VEK I
Sbjct 741 NEFSSNNMNDNTEELSNIFKININSENLNAIASIEKDEKENFSFLSNDNNMDKNVEKNIE 800
Query 253 WICGE--KCLIDDYDSYKNLLEYHRNRASRLYHDNPQNWEEAKYLRRLERQRNTRKKT 308
I E K +I+DYD + LL ++N S+ N N E+ K + + ++ +T + T
Sbjct 801 EIFDESNKNIIEDYDKFNKLLNENKNDKSKEETQNNSNVEDTKQNKEISKKMDTEEDT 858
> ccy:YSS_08550 DNA modification methylase
Length=364
Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (41%), Gaps = 20/140 (14%)
Query 13 YCSTKKNKGVIPPCPDERLRYVTA--------ACGECYECRKQKQRAWVTRMTEE-LKQN 63
+C GV+ ++ A +CY K K + + + L QN
Sbjct 44 FCDVFSGSGVVSRFAKAHSHFIIANDLENYSKLINKCYLSDKDKNLTELLKYYHKILTQN 103
Query 64 P--NAGFYTLTIDDEHYKKLSKECKSKDENTIATYALRMFLERIRKKLKKSV----KHWC 117
AGF + E Y ++ C KDE T ++L+ +R+K++K + KH+
Sbjct 104 LEFQAGFIS-----ELYAPKNESCIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFF 158
Query 118 ITELGHEKSERLHLHGIFWG 137
I L +E S + G+F G
Sbjct 159 IAPLIYEASVHSNTSGVFKG 178
> ccf:YSQ_08820 DNA modification methylase
Length=364
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (41%), Gaps = 20/140 (14%)
Query 13 YCSTKKNKGVIPPCPDERLRYVTA--------ACGECYECRKQKQRAWVTRMTEE-LKQN 63
+C GV+ Y+ A +CY K K + + + L QN
Sbjct 44 FCDIFSGSGVVSRFAKAHSNYILANDLENYSKLINKCYLSNKDKNLTELLKHYHKILTQN 103
Query 64 P--NAGFYTLTIDDEHYKKLSKECKSKDENTIATYALRMFLERIRKKLKKSV----KHWC 117
AGF + E Y ++ C KDE T ++L+ +R+K++K + KH+
Sbjct 104 LEFQAGFIS-----ELYAPKNEVCIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFF 158
Query 118 ITELGHEKSERLHLHGIFWG 137
I L +E S + G+F G
Sbjct 159 IAPLIYEASVHSNTSGVFKG 178
> ccoi:YSU_07800 DNA modification methylase
Length=364
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (41%), Gaps = 20/140 (14%)
Query 13 YCSTKKNKGVIPPCPDERLRYVTA--------ACGECYECRKQKQRAWVTRMTEE-LKQN 63
+C GV+ Y+ A +CY K K + + + L QN
Sbjct 44 FCDIFSGSGVVSRFAKAHSNYILANDLENYSKLINKCYLSNKDKNLTELLKHYHKILTQN 103
Query 64 P--NAGFYTLTIDDEHYKKLSKECKSKDENTIATYALRMFLERIRKKLKKSV----KHWC 117
AGF + E Y ++ C KDE T ++L+ +R+K++K + KH+
Sbjct 104 LEFQAGFIS-----ELYAPKNEVCIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFF 158
Query 118 ITELGHEKSERLHLHGIFWG 137
I L +E S + G+F G
Sbjct 159 IAPLIYEASVHSNTSGVFKG 178
> ccv:CCV52592_1677 DNA modification methylase
Length=366
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query 40 ECY----ECRKQKQRA-WVTRMTEELKQNPNAGFYT---LTIDDEHYKKLSKECKSKDEN 91
ECY RK K+ W + E +K NP +GF + D +H ++ + +K EN
Sbjct 78 ECYLANVSARKLKELGRWHEILLENIKSNPQSGFVSELYAPKDQDHIRREDRVFYTK-EN 136
Query 92 TIATYALRMFLERIRKKLKKSVKHWCITELGHEKSERLHLHGIFWG 137
+ R +E L ++++H+ I L +E S + + G+F G
Sbjct 137 ALYIDTARAQIE----NLPEAIRHFFIAPLLYEASTKANTSGVFKG 178
Lambda K H a alpha
0.319 0.135 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 575086215924