bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-21_CDS_annotation_glimmer3.pl_2_2
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 56.6 2e-07
cpt:CpB0227 hypothetical protein 53.1 4e-06
cpj:CPj0222 hypothetical protein 53.1 4e-06
cpa:CP0543 hypothetical protein 53.1 4e-06
cpn:CPn0222 hypothetical protein 53.1 4e-06
sang:SAIN_1071 hypothetical protein 55.1 6e-06
ene:ENT_29760 hypothetical protein 51.2 1e-04
llc:LACR_1419 hypothetical protein 49.3 4e-04
sda:GGS_0930 hypothetical protein 42.4 0.081
sagm:BSA_10280 hypothetical protein 42.4 0.081
ert:EUR_13130 hypothetical protein 42.4 0.084
eclo:ENC_21200 hypothetical protein 38.9 1.0
sacs:SUSAZ_06370 cytidyltransferase 37.7 2.2
bbe:BBR47_01470 hypothetical protein 37.7 2.2
sacr:SacRon12I_06490 hypothetical protein 37.4 2.6
sacn:SacN8_06500 hypothetical protein 37.4 2.6
sai:Saci_1333 hypothetical protein 37.4 2.6
smp:SMAC_03645 hypothetical protein 37.7 3.6
mhi:Mhar_0629 adenine deaminase 37.4 4.3
laa:WSI_05020 hypothetical protein 36.6 7.1
sbu:SpiBuddy_2357 hypothetical protein 34.3 7.1
rus:RBI_I01590 hypothetical phage protein 36.2 7.8
efa:EF3226 Rep protein 35.8 9.9
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query 28 PPDY---YLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSK 84
P +Y ++ +PC C C+ + + R ++E Y F+TLT+DD +L ++
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC--FLTLTYDDKHLPQYGS 69
Query 85 DTNKAVRLFLDRLRKDYGKQIRHWFVC-EFGTLYGRPHYHGILFDVPQTLIDG 136
++LFL RLR +F C E+GT RPHYH ++F+ +L+DG
Sbjct 70 LVKLHLQLFLKRLRDRISPHKIRYFGCGEYGTKLQRPHYHLLIFNY-DSLLDG 121
> cpt:CpB0227 hypothetical protein
Length=113
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (6%)
Query 28 PPDY---YLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSK 84
P +Y ++ +PC C C+ + + R ++E Y F+TLT+DD +L ++
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC--FLTLTYDDKHLPQYGS 69
Query 85 DTNKAVRLFLDRLRKDYGKQIRHWFVC-EFGTLYGRPHYHGIL 126
++LFL RLRK +F C +GT RPHYH +L
Sbjct 70 LVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (6%)
Query 28 PPDY---YLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSK 84
P +Y ++ +PC C C+ + + R ++E Y F+TLT+DD +L ++
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC--FLTLTYDDKHLPQYGS 69
Query 85 DTNKAVRLFLDRLRKDYGKQIRHWFVC-EFGTLYGRPHYHGIL 126
++LFL RLRK +F C +GT RPHYH +L
Sbjct 70 LVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (6%)
Query 28 PPDY---YLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSK 84
P +Y ++ +PC C C+ + + R ++E Y F+TLT+DD +L ++
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC--FLTLTYDDKHLPQYGS 69
Query 85 DTNKAVRLFLDRLRKDYGKQIRHWFVC-EFGTLYGRPHYHGIL 126
++LFL RLRK +F C +GT RPHYH +L
Sbjct 70 LVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (6%)
Query 28 PPDY---YLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSK 84
P +Y ++ +PC C C+ + + R ++E Y F+TLT+DD +L ++
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNC--FLTLTYDDKHLPQYGS 69
Query 85 DTNKAVRLFLDRLRKDYGKQIRHWFVC-EFGTLYGRPHYHGIL 126
++LFL RLRK +F C +GT RPHYH +L
Sbjct 70 LVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> sang:SAIN_1071 hypothetical protein
Length=288
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query 68 LFVTLTFDDDNLKKFSKD---TNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHG 124
LF TLTFDD+ + ++D K +R +L R+ YGK ++ FV E GR H+HG
Sbjct 72 LFWTLTFDDNKVD--ARDYPYAKKRLRAWLKYQREKYGK-FQYIFVAELHK-SGRIHFHG 127
Query 125 ILFDVPQTLIDGYSPDV------PGHHPLLASRWKYGFVFVGYVSD--ETCSYITKYVTK 176
+ L + SP G A WK GF V + D +T +YI+KY+TK
Sbjct 128 LTAGFSPPLTEARSPKTNRLIKKKGLQIYNAETWKNGFSTVSKIQDREKTANYISKYITK 187
Query 177 SI 178
+
Sbjct 188 EL 189
> ene:ENT_29760 hypothetical protein
Length=299
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (31%), Positives = 54/124 (44%), Gaps = 13/124 (10%)
Query 69 FVTLTFDDDNLKKFSKDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGILFD 128
F TLT D D++K + L R +D + + V E G H+H +L D
Sbjct 88 FTTLTIDPKQYDSLDYDSSKELLLKWCRKMRDRYENFDYLIVPELHK-SGAVHFHSLLGD 146
Query 129 VPQTLIDGYSPDVPGHHPLLASR--------WKYGFVFVGYVSDE--TCSYITKYVTKSI 178
+P I+ P PLL + W YGF + D+ T SY+TKY+TK +
Sbjct 147 IPANFIEAKHPKTGA--PLLRNERQIYNLADWTYGFTDCEEIEDKERTASYLTKYITKEL 204
Query 179 NGDK 182
DK
Sbjct 205 MTDK 208
> llc:LACR_1419 hypothetical protein
Length=284
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/120 (31%), Positives = 57/120 (48%), Gaps = 10/120 (8%)
Query 68 LFVTLTFDDDNLKKFS-KDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGIL 126
LF TLTFDD + + + K ++ +L +R+ YG+ FV E R H+HG+
Sbjct 71 LFWTLTFDDRKVNARNYQYARKRLQAWLKYMRETYGR-FGFLFVPELHKSSERIHFHGVT 129
Query 127 FDVPQTLIDGYSPD------VPGHHPLLASRWKYGFVFVGYVS--DETCSYITKYVTKSI 178
L++ P G A RWK GF V + +++ SYITKY++K +
Sbjct 130 QGFSPPLVEARYPKNRRLIKRNGMQIYNAPRWKNGFSTVSRIQSKEKSASYITKYISKDL 189
> sda:GGS_0930 hypothetical protein
Length=272
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (44%), Gaps = 34/148 (23%)
Query 68 LFVTLTFDDDNLKKFSKD---TNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHG 124
LF TLTFDD + S D K +R +L R+ YGK R+ F+ E GR H+HG
Sbjct 73 LFWTLTFDDAKIN--SHDYLIVKKKIRTWLKAQREKYGK-FRYIFIPELHK-NGRLHFHG 128
Query 125 ILFDVPQTLIDGYSPDVP--------------GHHPLLASRWKYGFVFVGYV--SDETCS 168
+ G+SP + G ++ GF V + S + +
Sbjct 129 V--------TGGFSPKLTKARNTKTGRLIKKNGKQVYNVDSYQLGFSTVTKIDSSKKVAN 180
Query 169 YITKYVTK---SINGDKVRPRIISSFGI 193
YITKY+TK +I +P+ SS G+
Sbjct 181 YITKYITKDLLAIPSGYKQPKYFSSRGL 208
> sagm:BSA_10280 hypothetical protein
Length=272
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (44%), Gaps = 34/148 (23%)
Query 68 LFVTLTFDDDNLKKFSKD---TNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHG 124
LF TLTFDD + S D K +R +L R+ YGK R+ F+ E GR H+HG
Sbjct 73 LFWTLTFDDAKIN--SHDYLIVKKKIRTWLKAQREKYGK-FRYIFIPELHK-NGRLHFHG 128
Query 125 ILFDVPQTLIDGYSPDVP--------------GHHPLLASRWKYGFVFVGYV--SDETCS 168
+ G+SP + G ++ GF V + S + +
Sbjct 129 V--------TGGFSPKLTKARNTKTGRLIKKNGKQVYNVDSYQLGFSTVTKIDSSKKVAN 180
Query 169 YITKYVTK---SINGDKVRPRIISSFGI 193
YITKY+TK +I +P+ SS G+
Sbjct 181 YITKYITKDLLAIPSGYKQPKYFSSRGL 208
> ert:EUR_13130 hypothetical protein
Length=316
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (47%), Gaps = 18/139 (13%)
Query 69 FVTLTFDDDNLKKFSKDTN-KAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGILF 127
FVTLT+D+ ++ + K R +L+ K Y + + + FV E G H+HG++
Sbjct 104 FVTLTYDNSKTDRYDYNACLKKCRQWLNNQHKRYSQDLAYIFVPERHKD-GAYHFHGLVA 162
Query 128 DVPQT-LIDG----------YSPDVPGHHPLL--ASRWKYGFVFVGYVSD--ETCSYITK 172
+V L+D D +P + W YG+ ++D + +YITK
Sbjct 163 NVGNMKLVDSGRVAIGKKSYIRTDKNKSYPTIYNLGGWNYGWSTATKINDSYKATNYITK 222
Query 173 YVTKSINGD-KVRPRIISS 190
YVTK I D K + R I+S
Sbjct 223 YVTKDICADLKGKHRYIAS 241
> eclo:ENC_21200 hypothetical protein
Length=378
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 65/178 (37%), Gaps = 40/178 (22%)
Query 112 EFGTLYGRPHYHGILFDVPQTLIDGYSPDVPGHHPLLASRWKYGFVFVGYVSDETCSYIT 171
E GR + +F+ +L+ S ++ R Y F + + E
Sbjct 155 EMSKKSGRSNNDKNIFNSITSLMKAQSYELTSLSSRKKERSVYFFHLMSLIDSEM----- 209
Query 172 KYVTKSINGDKVRPRIISSFGIGSNYFDTEESTLHKLGGQRYQPFMVLNGFQ------QA 225
+ GD++ P S I SNY EST K+ FM LNGF Q
Sbjct 210 --ILLDCEGDEIHPSETESHTIISNYIINGESTASKIN------FMTLNGFLTNEIYYQK 261
Query 226 MPRYY-----------YNKIFSDVDKQNIVLDRFVNPPVEFSWQGQKFSSKLERDEMR 272
+ YY YN FS++DK+ I+ W K+ +KL + MR
Sbjct 262 LHEYYVTYINKCFSNFYNDAFSNIDKRKILTKEL--------W--HKYGAKLSLEVMR 309
> sacs:SUSAZ_06370 cytidyltransferase
Length=228
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (5%)
Query 142 PGHHPLLASRWKYGFVFVGYVSDETCSYITKYVTKSINGDKVRPRIISSFGIGSNYFDTE 201
PGH L KYG V+V D+ I K IN + R +I S + F +
Sbjct 98 PGHIAFLREASKYGRVYVAVARDKNSEKIKG--RKPINDENQRLEVIKSVKYVYDAFLGD 155
Query 202 ESTLHKLGGQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFVNPPVEFSWQGQK 261
E K +R +P +++ G Q + K+ D+ + +++++ V P +
Sbjct 156 EKDFLK-SVERVKPNIIVLGPDQKVDE---QKLIDDLKNRGVIVEKIVRIPSRINNWAHS 211
Query 262 FSSKLERDEMRR 273
+S + + ++R
Sbjct 212 STSSIINEVLKR 223
> bbe:BBR47_01470 hypothetical protein
Length=254
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/64 (30%), Positives = 37/64 (58%), Gaps = 4/64 (6%)
Query 78 NLKKFSKDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGILFD-VPQTLIDG 136
+L++F + N+ L L R+D+ + + W++ E+G+ Y +YH ILF V + ++
Sbjct 49 DLEEFYEHLNQ---LQLSNCRRDFDRAVEEWYITEYGSGYKGVNYHDILFTLVKEAVVQY 105
Query 137 YSPD 140
SP+
Sbjct 106 QSPN 109
> sacr:SacRon12I_06490 hypothetical protein
Length=228
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (5%)
Query 142 PGHHPLLASRWKYGFVFVGYVSDETCSYITKYVTKSINGDKVRPRIISSFGIGSNYFDTE 201
PGH L KYG V+V D+ I K IN + R +I S + F +
Sbjct 98 PGHIAFLREASKYGRVYVAVARDKNSEKIKG--RKPINDENQRLEVIKSVKYVYDAFLGD 155
Query 202 ESTLHKLGGQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFVNPPVEFSWQGQK 261
E K +R +P +++ G Q + K+ D+ + +++++ V P +
Sbjct 156 EKDFLK-SVERVKPNIIVLGPDQKVDE---QKLIDDLKNRGVIVEKIVRIPSRINNWAHS 211
Query 262 FSSKLERDEMRR 273
+S + + ++R
Sbjct 212 STSSIINEVLKR 223
> sacn:SacN8_06500 hypothetical protein
Length=228
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (5%)
Query 142 PGHHPLLASRWKYGFVFVGYVSDETCSYITKYVTKSINGDKVRPRIISSFGIGSNYFDTE 201
PGH L KYG V+V D+ I K IN + R +I S + F +
Sbjct 98 PGHIAFLREASKYGRVYVAVARDKNSEKIKG--RKPINDENQRLEVIKSVKYVYDAFLGD 155
Query 202 ESTLHKLGGQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFVNPPVEFSWQGQK 261
E K +R +P +++ G Q + K+ D+ + +++++ V P +
Sbjct 156 EKDFLK-SVERVKPNIIVLGPDQKVDE---QKLIDDLKNRGVIVEKIVRIPSRINNWAHS 211
Query 262 FSSKLERDEMRR 273
+S + + ++R
Sbjct 212 STSSIINEVLKR 223
> sai:Saci_1333 hypothetical protein
Length=228
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (5%)
Query 142 PGHHPLLASRWKYGFVFVGYVSDETCSYITKYVTKSINGDKVRPRIISSFGIGSNYFDTE 201
PGH L KYG V+V D+ I K IN + R +I S + F +
Sbjct 98 PGHIAFLREASKYGRVYVAVARDKNSEKIKG--RKPINDENQRLEVIKSVKYVYDAFLGD 155
Query 202 ESTLHKLGGQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFVNPPVEFSWQGQK 261
E K +R +P +++ G Q + K+ D+ + +++++ V P +
Sbjct 156 EKDFLK-SVERVKPNIIVLGPDQKVDE---QKLIDDLKNRGVIVEKIVRIPSRINNWAHS 211
Query 262 FSSKLERDEMRR 273
+S + + ++R
Sbjct 212 STSSIINEVLKR 223
> smp:SMAC_03645 hypothetical protein
Length=838
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (29%), Positives = 39/90 (43%), Gaps = 8/90 (9%)
Query 17 DYAETYYGCFWPPDYYLEVPCGY--CHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTF 74
D AE + C P ++ PCG+ CH C R+R LY+ + P + F
Sbjct 91 DDAEVCFICANPITHHSVAPCGHSTCHICA------LRLRALYKNKDCPHCRTAAPFVIF 144
Query 75 DDDNLKKFSKDTNKAVRLFLDRLRKDYGKQ 104
DD KKF + T+K + D + Y +
Sbjct 145 TDDQNKKFEEYTSKEITSTDDNIGIKYAGE 174
> mhi:Mhar_0629 adenine deaminase
Length=580
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query 121 HYHGILFDVPQTLI----------DGYSPDVPGHHPLLASRWKYGFVFVGYVSDETCS 168
+Y G++F P L DG+ P + GH PLL+ R +V VG SD C+
Sbjct 169 NYPGVIFRDPSVLAKICLAGMRRKDGHRPRIDGHSPLLSGRDLAAYVAVGIGSDHECT 226
> laa:WSI_05020 hypothetical protein
Length=405
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (46%), Gaps = 18/116 (16%)
Query 84 KDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGILFDVPQTLIDGYSPDVPG 143
K V LFL RLRK+ GK+ R++FV E G PH H ++ L+
Sbjct 298 KGFGNKVSLFLKRLRKNTGKKFRYFFVFE-KHKSGDPHVHMLIHQQCDNLLKKAE----- 351
Query 144 HHPLLASRW-KYGFVFVGYVSDE--TCSYITKYVTKS-INGDKVRPRIISSFGIGS 195
+ W + GF V + ++ T Y+ KY+ K + G +VR +SF G+
Sbjct 352 ----VQEEWSREGFSHVRLLKEDLFTARYVCKYLMKEGMKGIRVR----ASFQYGA 399
> sbu:SpiBuddy_2357 hypothetical protein
Length=102
Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (45%), Gaps = 6/87 (7%)
Query 59 LRKYPPGTCLFVTLTFDDDNLKKFSKDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYG 118
+ Y C F+ +D+L +S + + F +L++ YG +R C T +G
Sbjct 8 ISHYEWMACFFI-----NDDLSGYSMEEITEIERFESQLKEYYGDSVRV-MDCSECTGFG 61
Query 119 RPHYHGILFDVPQTLIDGYSPDVPGHH 145
P Y G D+ + L++ D+P H
Sbjct 62 TPDYGGPKGDLCEYLVEYKPQDLPSEH 88
> rus:RBI_I01590 hypothetical phage protein
Length=271
Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/105 (28%), Positives = 48/105 (46%), Gaps = 16/105 (15%)
Query 68 LFVTLTFDDDNLKKFSKDTNKAVRLFLDRL---RKDYG-KQIRHWFVCEFGTLYGRPHYH 123
L + LT++ D+L + K R F+ RL RK +G +++ V E G+ GR H+H
Sbjct 67 LCIHLTYNGDHLPGNDEAVKKQFRNFIARLKRYRKKHGLPSLKYMSVTERGSRNGRYHHH 126
Query 124 GILFDVPQTLIDGYSPDVPGHHPLLASRWKYGFVFVGYVSDETCS 168
I+ D+P P+L W G+V + + + C
Sbjct 127 TIV----------NCGDMPA--PVLVELWGQGYVDIKVLQFDQCG 159
> efa:EF3226 Rep protein
Length=277
Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query 44 QKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSKD---TNKAVRLFLDRLR-- 98
QK Y NQ R + + F+TLTF KK D TN + F++RL
Sbjct 66 QKHYKNQ-RFVVARLIDMNLDNQTKFLTLTF-----KKNITDIAYTNSEFKKFMNRLNYH 119
Query 99 --KDYGKQIRHWFVCEFGTLYGRPHYHGILFDVPQTLIDGYSPDVPGHHPLLASRWKYGF 156
K QI++ E +G HYH ILF P Y P H L + W +G
Sbjct 120 LYKTKKAQIKYLATWE-KQKHGAIHYHVILFSFP------YLP-----HAELTAIWGHGL 167
Query 157 VFVGYVSDETCSYITKYVTKSINGD 181
+ + + ++ +YV+K + D
Sbjct 168 IKINKIDIDSAENRGRYVSKYFDKD 192
Lambda K H a alpha
0.323 0.141 0.449 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 546803287272