bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-25_CDS_annotation_glimmer3.pl_2_1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  cpas:Clopa_2187  stage II sporulation protein P                     36.6    3.2
  bfu:BC1G_15919  hypothetical protein                                36.2    4.2


> cpas:Clopa_2187  stage II sporulation protein P
Length=369

 Score = 36.6 bits (83),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 26/93 (28%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query  74   LNSLRIAVIIPNDKQAKEVTVFRERFNKIVVDVTSTGFCAKITKVILRSLCVI---CNLR  130
            LN + I +  P++   KEV+ FRE  N +  +   TG  AKI+   L+   +     N  
Sbjct  86   LNYIGINLSHPDEILKKEVSYFREDNNSVAYNSNDTG-IAKISDFNLKDSDITKNSTNNS  144

Query  131  HGDRNSISTEVFRALQPSIRRTNAKQAKQQLSI  163
             GD ++ S + F+   P +++ N   +K ++ I
Sbjct  145  SGDSSNPSNQTFQIYNPKLKK-NLDNSKPEVLI  176


> bfu:BC1G_15919  hypothetical protein
Length=506

 Score = 36.2 bits (82),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 26/114 (23%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query  88   QAKEVTVFRERFNKIVVDVTSTGFCAKITKVI-LRSLCVICNLRHGDRNSISTEVFRA-L  145
            + +++T+F E FNKI        F  ++   I +RS+  +C L  GD    +   F+  L
Sbjct  85   EGRQMTLFMEHFNKIGKAFEENFFGTRVINTIEVRSIQQVCALSSGDYGKPAQNFFKEFL  144

Query  146  QPSIRRTNAKQAKQQLSIPRTIASHRLEKTLIRERQAQFVHSERCINVITRTSS  199
               +   ++K  K      R I  H   +  + +      H +R +++I    S
Sbjct  145  GDGVLSLDSKAWKHS----RDIVKHIFSRAEVSDMDTLSFHVDRFLDLIPSDGS  194



Lambda      K        H        a         alpha
   0.322    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229187319678