bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-25_CDS_annotation_glimmer3.pl_2_5
Length=92
Score E
Sequences producing significant alignments: (Bits) Value
abp:AGABI1DRAFT76144 AGABI1DRAFT_76144; hypothetical protein 36.6 0.47
tbd:Tbd_0018 multi-sensor signal transduction histidine kinase... 34.7 2.0
bur:Bcep18194_B1619 LuxR family transcriptional regulator 33.9 2.6
bced:DM42_3562 bacterial regulatory s, luxR family protein 33.9 3.3
bcj:BCAM1526 LuxR superfamily regulatory protein 33.9 3.3
psp:PSPPH_0299 flagellar basal body protein FliL 33.1 3.3
psb:Psyr_0314 flagellar basal body-associated protein FliL-lik... 33.1 3.5
pst:PSPTO_5230 flagellar basal body-associated protein FliL-li... 32.7 3.9
bct:GEM_4230 LuxR family transcriptional regulator 33.1 5.5
bcen:DM39_3482 bacterial regulatory s, luxR family protein 32.7 7.7
srl:SOD_c28360 nodV; nodulation protein V (EC:2.7.13.3) 32.7 8.3
sbi:SORBI_04g007100 SORBIDRAFT_04g007100, Sb04g007100; hypothe... 32.7 8.4
> abp:AGABI1DRAFT76144 AGABI1DRAFT_76144; hypothetical protein
Length=1410
Score = 36.6 bits (83), Expect = 0.47, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (2%)
Query 15 TGDLFCLANDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRP 74
+G ++ D L RSM + V +E D LSR +D V+ V+ VS D P+VE P
Sbjct 1230 SGSMYRFQYDGRLQRSMETAVMLMETFDQLSR-KDKYVWDVSDVSGDGPDIPLVEVYKPP 1288
Query 75 R 75
+
Sbjct 1289 K 1289
> tbd:Tbd_0018 multi-sensor signal transduction histidine kinase
(EC:2.7.3.-)
Length=710
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/47 (43%), Positives = 30/47 (64%), Gaps = 1/47 (2%)
Query 39 EDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRL-ALRVSALM 84
+DAD L+R ++V QVA + + VD F +PR RL AL ++AL+
Sbjct 522 QDADFLARATQTIVNQVAAMKNMVDAFAGYARMPRARLEALDLNALV 568
> bur:Bcep18194_B1619 LuxR family transcriptional regulator
Length=405
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 23 NDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRLALRVSA 82
N ++R + D+ E+ + +R +V+ T ++ V+ PI + +PRL L V
Sbjct 244 NGLTIARGTIEATDAQENRTLKRLIRHAVMGHHGTAAATVEAMPITRSFDKPRLGLLVRT 303
Query 83 LM 84
++
Sbjct 304 VL 305
> bced:DM42_3562 bacterial regulatory s, luxR family protein
Length=396
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 23 NDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRLALRVSA 82
N ++R + D+ E+ + +R +V+ T ++ V+ PI + +PRL L V
Sbjct 235 NGLTIARGTIEATDAQENRTLKRLIRHAVMGHHGTAAATVEAMPITRSFDKPRLGLLVRT 294
Query 83 LM 84
++
Sbjct 295 VL 296
> bcj:BCAM1526 LuxR superfamily regulatory protein
Length=396
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 23 NDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRLALRVSA 82
N ++R + D+ E+ + +R +V+ T ++ V+ PI + +PRL L V
Sbjct 235 NGLTIARGTIEATDAQENRTLKRLIRHAVMGHHGTAAATVEAMPITRSFDKPRLGLLVRT 294
Query 83 LM 84
++
Sbjct 295 VL 296
> psp:PSPPH_0299 flagellar basal body protein FliL
Length=135
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (56%), Gaps = 5/54 (9%)
Query 23 NDAVLSRSMVSV-----VDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEAL 71
NDA++ +VS+ VDS+ A+ +R + QV V +D +G PIVE L
Sbjct 74 NDALIRNQLVSLFTQQTVDSMSSAEAKENIRQEALKQVQRVMTDEEGKPIVEDL 127
> psb:Psyr_0314 flagellar basal body-associated protein FliL-like
protein
Length=135
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (56%), Gaps = 5/54 (9%)
Query 23 NDAVLSRSMVSV-----VDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEAL 71
NDA++ +VS+ VDS+ A+ +R + QV V +D +G PIVE L
Sbjct 74 NDALIRNQLVSLFTQQTVDSMSSAEAKENIRQEALKQVQRVMNDEEGKPIVEDL 127
> pst:PSPTO_5230 flagellar basal body-associated protein FliL-like
protein
Length=135
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (56%), Gaps = 5/54 (9%)
Query 23 NDAVLSRSMVSV-----VDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEAL 71
NDA++ +VS+ VDS+ A+ +R + QV V +D +G PIVE L
Sbjct 74 NDALIRNQLVSLFTQQTVDSMSSAEAKENIRQEALKQVQRVMNDEEGKPIVEDL 127
> bct:GEM_4230 LuxR family transcriptional regulator
Length=396
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 23 NDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRLALRVSA 82
N ++R + D+ E+ + +R +V+ T ++ V+ PI +PRL L V
Sbjct 235 NGLTIARGTIEATDAQENRTLKRLIRHAVMGHHGTAAAIVEAMPITRGFDKPRLGLLVRT 294
Query 83 LM 84
++
Sbjct 295 VL 296
> bcen:DM39_3482 bacterial regulatory s, luxR family protein
Length=396
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/63 (24%), Positives = 31/63 (49%), Gaps = 0/63 (0%)
Query 22 ANDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSSDVDGFPIVEALPRPRLALRVS 81
N ++R + D+ E+ + +R +V+ T ++ V+ PI + +PRL L V
Sbjct 234 GNGLTVARGTIEATDAQENRTLKRLIRHAVMGHHGTAAAIVEAMPITRSFDKPRLGLLVR 293
Query 82 ALM 84
++
Sbjct 294 TVL 296
> srl:SOD_c28360 nodV; nodulation protein V (EC:2.7.13.3)
Length=1868
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (52%), Gaps = 2/66 (3%)
Query 1 MQNMYVIRDEVSYETGDLFCLANDAVLSRSMVSVVDSVEDADVLSRMRDSVVYQVATVSS 60
+Q + + +E G L CL + L +S V ++ D D+ ++ +V+ Q+ T+S+
Sbjct 625 LQQLEKMPEETRKLLGSLACLGSSGELG--TISRVLNLSDTDIRYQLHPAVIAQLITLSA 682
Query 61 DVDGFP 66
D FP
Sbjct 683 DTYTFP 688
> sbi:SORBI_04g007100 SORBIDRAFT_04g007100, Sb04g007100; hypothetical
protein
Length=1017
Score = 32.7 bits (73), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 33/64 (52%), Gaps = 14/64 (22%)
Query 7 IRDEVSYETGDLFCLANDAVLSRSMVSVVDSVEDADVLSRM--------------RDSVV 52
+++EV + D+ CL A++ RSM+ ++D V + D++ R RD +
Sbjct 227 VKEEVGKDLDDVCCLLQTALVGRSMLILLDDVWEQDIVDRFTRLYDNDCRYLVTTRDEAI 286
Query 53 YQVA 56
Y++A
Sbjct 287 YEIA 290
Lambda K H a alpha
0.318 0.132 0.354 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 127171902990