bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-25_CDS_annotation_glimmer3.pl_2_6

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  vej:VEJY3_23341  methyl-accepting chemotaxis protein                38.1    0.53
  stb:SGPB_0222  hypothetical protein                                 35.4    4.2
  clv:102094860  SORCS3; sortilin-related VPS10 domain containing...  35.0    6.8
  rrd:RradSPS_1129  Phosphomannomutase                                34.7    7.7


> vej:VEJY3_23341  methyl-accepting chemotaxis protein
Length=547

 Score = 38.1 bits (87),  Expect = 0.53, Method: Compositional matrix adjust.
 Identities = 26/71 (37%), Positives = 39/71 (55%), Gaps = 4/71 (6%)

Query  80   YGDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNLSEKLSS  139
            Y DFT L   P+  L   H S+Y  A+ + + +A   N +R    ++++  DNLSEKL+ 
Sbjct  122  YVDFTRLTMTPL--LTQKHASQYTTAEFNQNFEAAMVN-YRVAGEEMINAIDNLSEKLNQ  178

Query  140  VVPNSDVEKEG  150
             V  SDV+  G
Sbjct  179  TVI-SDVQANG  188


> stb:SGPB_0222  hypothetical protein
Length=264

 Score = 35.4 bits (80),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 0/47 (0%)

Query  4    KEARIPNISSIYTASGSPIHRILEPRFDGVNTCLVVTGEENIQDRME  50
            +E RI  IS     +   + R+++  FD   + L +T +ENIQDR +
Sbjct  55   QEERIKRISKTRKNTKWKLQRLIDTNFDDKTSFLTLTTKENIQDRQD  101


> clv:102094860  SORCS3; sortilin-related VPS10 domain containing 
receptor 3
Length=1053

 Score = 35.0 bits (79),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 40/83 (48%), Gaps = 8/83 (10%)

Query  39   VTGEENIQDRMEAEAPSTDINYMLHRLSLGDTSVLSSKRPMYGDFTGLPSDPIEALNLVH  98
            VTG +   D +  EA + D +   H L+      L +KR      TG  S  I+  +LV 
Sbjct  176  VTGLDKEPDLVHMEARTADGH--THYLTCRIQECLETKR------TGPFSRSIDISSLVV  227

Query  99   QSEYAFAQLSADDKAKYNNDWRR  121
            Q EY F Q++A  +A Y   +RR
Sbjct  228  QDEYIFLQVTAGGRANYYVSYRR  250


> rrd:RradSPS_1129  Phosphomannomutase
Length=451

 Score = 34.7 bits (78),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (48%), Gaps = 5/82 (6%)

Query  78   PMY----GDFTGLPSDPIEALNLVHQSEYAFAQLSADDKAKYNNDWRRWFADLLSGRDNL  133
            PMY    G F   P +PIE  N+V   E   A+  AD    ++ D  R F     GR   
Sbjct  200  PMYFALDGSFPNHPPNPIEPENMVELQERVVAE-GADFGVAFDGDADRCFLVDEQGRTVS  258

Query  134  SEKLSSVVPNSDVEKEGADSVV  155
             + L+++V  + +EKE   +++
Sbjct  259  GDILAALVAKNILEKEPGATIL  280



Lambda      K        H        a         alpha
   0.311    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126992737244