bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-26_CDS_annotation_glimmer3.pl_2_5 Length=65 Score E Sequences producing significant alignments: (Bits) Value pstu:UIB01_21105 lytic transglycosylase 37.0 0.15 psh:Psest_4145 lytic murein transglycosylase 36.2 0.28 cic:CICLE_v10024062mg hypothetical protein 34.3 1.1 cic:CICLE_v10024495mg hypothetical protein 33.9 1.9 > pstu:UIB01_21105 lytic transglycosylase Length=373 Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats. Identities = 18/55 (33%), Positives = 32/55 (58%), Gaps = 2/55 (4%) Query 5 QTMEIIDQVYQDMFVETVLKFEVLEKSVDVGSAGRMAHQERLDGMRKLYTKLIKE 59 Q +E++ + ++ MF++ +LK + K+ DV SAG LD MR Y +++ E Sbjct 26 QQLEMVSEQFEAMFLQQILK--QMRKAGDVLSAGNPMRSRELDTMRDFYDEVLAE 78 > psh:Psest_4145 lytic murein transglycosylase Length=370 Score = 36.2 bits (82), Expect = 0.28, Method: Composition-based stats. Identities = 18/55 (33%), Positives = 32/55 (58%), Gaps = 2/55 (4%) Query 5 QTMEIIDQVYQDMFVETVLKFEVLEKSVDVGSAGRMAHQERLDGMRKLYTKLIKE 59 Q +E++ + ++ MF++ +LK + K+ DV SAG LD MR Y +++ E Sbjct 26 QQLEMVSEQFEAMFLQQILK--QMRKAGDVLSAGNPMRSRELDTMRDFYDEVLAE 78 > cic:CICLE_v10024062mg hypothetical protein Length=303 Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats. Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 3/58 (5%) Query 2 DISQTMEIIDQVYQDMFVETVLKFEVLEK--SVDVGSAGRMAHQERLDGMRKLYTKLI 57 + +QT+E + + +DM +E +LEK ++++ AG AH LD R+ Y K+I Sbjct 89 NFNQTLEYVKDI-RDMRMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKII 145 > cic:CICLE_v10024495mg hypothetical protein Length=372 Score = 33.9 bits (76), Expect = 1.9, Method: Composition-based stats. Identities = 19/58 (33%), Positives = 33/58 (57%), Gaps = 3/58 (5%) Query 2 DISQTMEIIDQVYQDMFVETVLKFEVLEK--SVDVGSAGRMAHQERLDGMRKLYTKLI 57 + +QT+E + + +DM +E +LEK ++++ AG AH LD R+ Y K+I Sbjct 143 NFNQTLEYVKDI-RDMGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKII 199 Lambda K H a alpha 0.321 0.136 0.362 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 128662101624