bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-27_CDS_annotation_glimmer3.pl_2_1

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  psn:Pedsa_1494  ribonucleoside-diphosphate reductase (EC:1.17.4.1)  38.1    5.6
  alv:Alvin_2866  hypothetical protein                                35.0    8.9


> psn:Pedsa_1494  ribonucleoside-diphosphate reductase (EC:1.17.4.1)
Length=854

 Score = 38.1 bits (87),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 21/168 (13%)

Query  224  LKNIDDTRTEILAAKSTSAYILSNVRMPYGAATGTIELPNYNRTKVYRSSNAWFSQAGLA  283
            +  ID  + +++  +    + LS++R P G+                   N+  +  GL 
Sbjct  128  IMKIDQEQIQLMKRRGGVGHDLSHIR-PKGSPV----------------KNSALTSTGLV  170

Query  284  VKTYLSDRFNNWLNTEWIDGTTGGINAITAVDVTDGKLTMDALILQKKIFNMLNRVAITD  343
                  +R++N       DG  G +    +++  D +  +DA + Q K+      V ITD
Sbjct  171  P---FMERYSNSTREVAQDGRRGALMLSVSIEHPDAERFIDAKMEQGKVTGANVSVRITD  227

Query  344  GTYQAW-REATYGIRSATLPESPIFCGGMQSEIAFDEIVSNSATEEEP  390
               QA  +++ +  R     E PIF   ++++  +D+IV N+    EP
Sbjct  228  AFMQAVEKDSDFVQRYPIGAEKPIFSNKIKAKELWDKIVHNAWRSAEP  275


> alv:Alvin_2866  hypothetical protein
Length=89

 Score = 35.0 bits (79),  Expect = 8.9, Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 37/87 (43%), Gaps = 4/87 (5%)

Query  385  ATEEEPLGTLAGR-GVATMYKSGRGLKIKCTEPSMIMALG--SITPRIDYSQGNKWWTRL  441
            + + E L T   R  V  M  +GRGL+    E     A G       +  S+G KW    
Sbjct  2    SDQTETLMTFPCRFAVKAMGPAGRGLEAVVVEIVSRHAEGVDETAISVRESRGGKWIAVT  61

Query  442  QNMDDFHKPTLDAIGFQELITEEAAAW  468
               +   KP LDAI +QEL   E  AW
Sbjct  62   LTFEAHSKPQLDAI-YQELSAHELVAW  87



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1311497975502