bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-29_CDS_annotation_glimmer3.pl_2_3
Length=368
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 82.0 4e-16
cpt:CpB0227 hypothetical protein 80.1 1e-15
cpj:CPj0222 hypothetical protein 80.1 1e-15
cpa:CP0543 hypothetical protein 80.1 1e-15
cpn:CPn0222 hypothetical protein 80.1 1e-15
dja:HY57_15810 RND transporter MFP subunit 42.7 0.095
pyo:PY01486 hypothetical protein 37.0 3.4
mvo:Mvol_0445 hypothetical protein 37.7 4.0
acs:100553445 ptprz1; protein tyrosine phosphatase, receptor-t... 37.7 4.7
dak:DaAHT2_2607 (p)ppGpp synthetase I, SpoT/RelA (EC:2.7.6.5) 37.4 5.6
tad:TRIADDRAFT_28310 hypothetical protein 36.2 7.3
hni:W911_14610 hypothetical protein 36.6 8.0
ter:Tery_2450 hypothetical protein 36.6 8.0
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (56%), Gaps = 13/108 (12%)
Query 46 ITIPCGKCIGCRLEYSRQWANRCLLEMKEHDSAYFVTLTYNDWHVPISHYIDQTTGEFCD 105
+ +PC KC CR ++++ W+ RC+ E ++ F+TLTY+D H+P
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP-------------Q 66
Query 106 VQTLRKRDYQLFMKRLRKAFPDQQIRFYAAGEYGPKTYRPHYHAILFG 153
+L K QLF+KRLR +IR++ GEYG K RPHYH ++F
Sbjct 67 YGSLVKLHLQLFLKRLRDRISPHKIRYFGCGEYGTKLQRPHYHLLIFN 114
> cpt:CpB0227 hypothetical protein
Length=113
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/106 (38%), Positives = 59/106 (56%), Gaps = 13/106 (12%)
Query 46 ITIPCGKCIGCRLEYSRQWANRCLLEMKEHDSAYFVTLTYNDWHVPISHYIDQTTGEFCD 105
+ +PC KC CR ++++ W+ RC+ E ++ F+TLTY+D H+P
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP-------------Q 66
Query 106 VQTLRKRDYQLFMKRLRKAFPDQQIRFYAAGEYGPKTYRPHYHAIL 151
+L K QLF+KRLRK +IR++ G YG K RPHYH +L
Sbjct 67 YGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/106 (38%), Positives = 59/106 (56%), Gaps = 13/106 (12%)
Query 46 ITIPCGKCIGCRLEYSRQWANRCLLEMKEHDSAYFVTLTYNDWHVPISHYIDQTTGEFCD 105
+ +PC KC CR ++++ W+ RC+ E ++ F+TLTY+D H+P
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP-------------Q 66
Query 106 VQTLRKRDYQLFMKRLRKAFPDQQIRFYAAGEYGPKTYRPHYHAIL 151
+L K QLF+KRLRK +IR++ G YG K RPHYH +L
Sbjct 67 YGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/106 (38%), Positives = 59/106 (56%), Gaps = 13/106 (12%)
Query 46 ITIPCGKCIGCRLEYSRQWANRCLLEMKEHDSAYFVTLTYNDWHVPISHYIDQTTGEFCD 105
+ +PC KC CR ++++ W+ RC+ E ++ F+TLTY+D H+P
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP-------------Q 66
Query 106 VQTLRKRDYQLFMKRLRKAFPDQQIRFYAAGEYGPKTYRPHYHAIL 151
+L K QLF+KRLRK +IR++ G YG K RPHYH +L
Sbjct 67 YGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/106 (38%), Positives = 59/106 (56%), Gaps = 13/106 (12%)
Query 46 ITIPCGKCIGCRLEYSRQWANRCLLEMKEHDSAYFVTLTYNDWHVPISHYIDQTTGEFCD 105
+ +PC KC CR ++++ W+ RC+ E ++ F+TLTY+D H+P
Sbjct 20 VLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLP-------------Q 66
Query 106 VQTLRKRDYQLFMKRLRKAFPDQQIRFYAAGEYGPKTYRPHYHAIL 151
+L K QLF+KRLRK +IR++ G YG K RPHYH +L
Sbjct 67 YGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> dja:HY57_15810 RND transporter MFP subunit
Length=389
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (63%), Gaps = 1/51 (2%)
Query 310 LLETDNPELSEKLREARKNLAKEISRCKLSQ-TDKRYMNMLDTEEEVKQEA 359
L E D PEL ++ +A+ NLA+ + +L+ TDKR+ N+L + KQEA
Sbjct 110 LAEIDTPELDQQFEQAKANLARAQANARLAVLTDKRWKNLLTSNSVSKQEA 160
> pyo:PY01486 hypothetical protein
Length=181
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/77 (30%), Positives = 43/77 (56%), Gaps = 5/77 (6%)
Query 169 YPYYWSKSLQKVWDEGENLQNLYEKVEKKPLQAYQNVLRYIQGCKESITPLTSRGFVLVA 228
Y + S L+K+ +E ENL+ L ++KK + N+L YI+G + ++ + ++ F +
Sbjct 103 YNFQNSDQLKKLENEKENLKVL---IDKKHEETMNNLLSYIEGERINLDNVKNQNFNEIN 159
Query 229 D--VSWETCAYVARYVT 243
D V +E Y+ Y+T
Sbjct 160 DCFVIFEFSIYMQIYIT 176
> mvo:Mvol_0445 hypothetical protein
Length=493
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 34/153 (22%)
Query 75 HDSAYFVTLTYNDWHVPISHYIDQTTGEFCDVQTLRK---RDYQLFMKRLRKAF---PDQ 128
HD A F+TLT F +Q + ++Y+ R++K F ++
Sbjct 215 HDKAVFLTLT-------------SDPSLFDSIQEMADNLHKNYKKIFDRIQKRFIRKTNR 261
Query 129 QIRFYAAGEYGPKTYRPHYHAILFGLKLDDLEPYGMSDQNYPYYWSKSLQKVWDEGENLQ 188
++ + + E+ PK PH H ++FG DL Y + +N W E E +
Sbjct 262 KLEYIYSFEFSPKKALPHLHVVIFGTDFLDLRDYRKNAKN------------WTEQETTK 309
Query 189 NLYEKVEKKPLQAY-QNVLRYIQGCKESITPLT 220
+++ E Q+Y Q YI G K ++ T
Sbjct 310 TVFKLSE--WWQSYGQGRTVYIYGIKRTLDKKT 340
> acs:100553445 ptprz1; protein tyrosine phosphatase, receptor-type,
Z polypeptide 1
Length=2292
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/30 (47%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
Query 103 FCDVQTLRKRDYQLFMKRLRKAFPDQQIRF 132
FCDV T+++ DY + M L+ F DQQ++F
Sbjct 264 FCDVLTMQQSDYVMMMDYLQNNFRDQQLKF 293
> dak:DaAHT2_2607 (p)ppGpp synthetase I, SpoT/RelA (EC:2.7.6.5)
Length=738
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/72 (35%), Positives = 38/72 (53%), Gaps = 4/72 (6%)
Query 284 LYDYDYINVSTRQGGVKFRPPRYFNRLLET--DNPELSEKLREARKNLAKEISRCKLSQT 341
L+D D +++ TR+ V+F P +L +T EL++ R+ R LA E+ R + Q
Sbjct 466 LHDGDQVSIVTRKEAVRFEPG--IQQLCQTPKARAELAKMFRQRRLKLALEVGRSIVHQE 523
Query 342 DKRYMNMLDTEE 353
KRY LD E
Sbjct 524 LKRYGVPLDILE 535
> tad:TRIADDRAFT_28310 hypothetical protein
Length=214
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (4%)
Query 253 FYKEHNIEPPFSLMSRKPGIGRGYYDSNLDSLYDYDYINVSTRQGGVKFRPPRYFNRLLE 312
FY +H ++ PF+ ++++ N++ +DYDY + S Q + FR F+R LE
Sbjct 93 FYIDHGLQNPFTTLTKQDKYRDDRQRENIEKRHDYDY-HRSDEQIAICFRCADSFSRSLE 151
Query 313 TDNPELSEK--LREARKNLAKEIS 334
+ S + +R +K L K++
Sbjct 152 RNFILCSSQITIRHLKKFLIKKLC 175
> hni:W911_14610 hypothetical protein
Length=296
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/123 (27%), Positives = 46/123 (37%), Gaps = 13/123 (11%)
Query 193 KVEKKPLQAYQNVLRYIQGCKESITPLTSRGFVLVADVSWETCAYVARYVTKKLTGEVAS 252
K K QA + R +Q E+ P F L DV W V RY+ K E
Sbjct 154 KAAVKAFQAAKEDQR-MQLAAEAPAP-----FWLTPDVDWSAIPAVLRYMALKWDAEADE 207
Query 253 FYKEHNIEPPFSLMSRKPGIGRGYY-------DSNLDSLYDYDYINVSTRQGGVKFRPPR 305
F+++H PF +R GI Y +S L S + I + ++ PP
Sbjct 208 FFRDHAPLKPFMQAARARGISLSDYIREFVELESTLRSDPERGMIMMLEKEARASGIPPE 267
Query 306 YFN 308
F
Sbjct 268 QFR 270
> ter:Tery_2450 hypothetical protein
Length=466
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (9%)
Query 137 EYGPKTYRPHYHAILF-GLKLDDLEPYGMSDQNYPYYWSKSLQKVWD 182
EY K Y +H +LF GLK+ L+P + Y YW+ +LQ +WD
Sbjct 49 EYMEKIY---FHILLFHGLKILSLKPTHLDLGKYSKYWTSNLQNIWD 92
Lambda K H a alpha
0.319 0.137 0.428 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 706893140446