bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-30_CDS_annotation_glimmer3.pl_2_1
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 191 9e-52
stv:V470_09830 capsid protein 49.3 0.001
sgp:SpiGrapes_2118 glycogen/starch/alpha-glucan phosphorylase 39.7 2.0
sla:SERLADRAFT_453680 hypothetical protein 38.1 3.1
rxy:Rxyl_2724 formate dehydrogenase (EC:1.2.1.2) 38.9 3.7
> fve:101314332 capsid protein VP1-like
Length=421
Score = 191 bits (486), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 135/388 (35%), Positives = 190/388 (49%), Gaps = 48/388 (12%)
Query 32 VVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHYFFVPNRLVWNEWEDFITKGVDGEDMP 91
V+PGD F V RLA + P+M +++ + +FFVPNRLVWN W F+ + +D P
Sbjct 77 VLPGDTFNVNVTMFGRLATPIFPVMDNLHLDSFFFFVPNRLVWNNWVKFMGE----QDNP 132
Query 92 MFPKIQINQDSHLVSSASLIKEYFGDSSLWDYLGLPTLSACGNKSYDVVNGVKVPSGFQV 151
+ S+ + + SL DY GLPT G V +
Sbjct 133 A------DSISYSIPQQVSPAGGYAVGSLQDYFGLPTAGQVG-----------VSNTVSH 175
Query 152 SALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGTTVGGDQLMALMSLRRRAWEKDYFTSAL 211
SALP RAY LIYN+++RD+NL + G G L+ RR DYFTSAL
Sbjct 176 SALPVRAYNLIYNQWFRDENLQNSVVVDKGDGPDTTPSTNYTLL---RRGKRHDYFTSAL 232
Query 212 PWLQRG-PEVTVPVQGAGGSMDVVYERQSDSQKWVDSSGREFENGRAYDITMTRANDPNS 270
PW Q+G V++P+ G S + + S S V I+ T+ N +
Sbjct 233 PWPQKGGTAVSLPL---GTSAPIAFSGASGSDVGV--------------ISTTQGNLIKN 275
Query 271 ALMVAVNGGTNNRAPELDPNGTLKVNVDE-MGININDLRTSNALQRWFERNARGGSRYIE 329
M + GT+ + L ++ IN LR S +Q+ ER+ARGG+RY E
Sbjct 276 --MYSTGSGTSLKIGSATVATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTRYTE 333
Query 330 QILSHFGVRSSDARLQRPQFLGGGRMPISVSEV---LQTSSTDETSPQANMAGHGISAGI 386
I SHFGV S DARLQRP++LGGG PI+++ + T + T+PQ N+A G
Sbjct 334 IIRSHFGVASPDARLQRPEYLGGGSTPINIAPIAQTGGTGAQGTTTPQGNLAAFGTYMAK 393
Query 387 NNGFKHYFEEHGYIIGIMSITPRSGYQQ 414
+GF F EHG++IG++S+ YQQ
Sbjct 394 GHGFSQSFVEHGHVIGLVSVRADLTYQQ 421
> stv:V470_09830 capsid protein
Length=427
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (34%), Positives = 47/89 (53%), Gaps = 5/89 (6%)
Query 6 RNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMM--HRVNVFT 63
R +LS+ L +G L+ I PV+ GD F + +RL+PL + V++FT
Sbjct 10 RMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFT 69
Query 64 HYFFVPNRLVWNE-WEDFITKGVDGEDMP 91
F+VP+R V+ E W F+ GV+ +P
Sbjct 70 --FYVPHRHVYGEQWIKFMKDGVNATPLP 96
> sgp:SpiGrapes_2118 glycogen/starch/alpha-glucan phosphorylase
Length=837
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/48 (46%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query 212 PWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWVDSSGREFENGRAYD 259
PW P+V PVQ GG + V++E D+ KWV G E NG AYD
Sbjct 177 PWEIHRPDVVYPVQ-FGGEVQVIHENGRDNFKWV---GSELVNGVAYD 220
> sla:SERLADRAFT_453680 hypothetical protein
Length=247
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/95 (31%), Positives = 39/95 (41%), Gaps = 15/95 (16%)
Query 53 APMMHRVNVFTHYFFVPNRLVWNEWEDF-----------ITKGVDGEDMPMFPKIQINQD 101
+P MH+ Y VP VW E+ D TK DG D+ P IQ
Sbjct 20 SPNMHKARWALSYKGVPFETVWIEYSDIQTRMKSIGAQPTTKTKDGNDLYTLPVIQDPST 79
Query 102 SHLVSSASLIKEYFGDSSLWDYLGLPTLSACGNKS 136
+VS + +I EY + Y LPTL +K+
Sbjct 80 GAIVSDSFIIAEYLDKT----YPSLPTLFPSSSKA 110
> rxy:Rxyl_2724 formate dehydrogenase (EC:1.2.1.2)
Length=847
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (49%), Gaps = 6/86 (7%)
Query 416 VPRDFTKFDNMDFYF--PEF--AHLSEQEIKNQELFV-SEDAAYNNGTFGYTPRYAEYKY 470
V RD T+ + F++ PE L +EIK + F+ + G+F T R +++
Sbjct 377 VVRDMTEVETASFWYDAPEIETGELKTEEIKTEVFFLPAASHVEKEGSFTNTQRLLQWRE 436
Query 471 HPSEAHGDFRSNLSF-WHLNRIFEDK 495
E GD RS+L F +HL R +K
Sbjct 437 KAVEPKGDCRSDLWFMYHLGRRIREK 462
Lambda K H a alpha
0.319 0.135 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1219784830362