bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-30_CDS_annotation_glimmer3.pl_2_3

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  tad:TRIADDRAFT_54908  hypothetical protein                          38.9    1.3
  bsc:COCSADRAFT_305741  hypothetical protein                         36.6    6.6


> tad:TRIADDRAFT_54908  hypothetical protein
Length=1005

 Score = 38.9 bits (89),  Expect = 1.3, Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (5%)

Query  203  NQKVLQYELDRTLFDNKIKLSNAEYSTAMEALRKLRQDNDINAFR---YSM-ERVFGNSS  258
            N +V QYEL     DN+IKL N + +  ++A   + + N+I+  R   Y+M  ++     
Sbjct  485  NNQVFQYELSVLNSDNRIKLKNVDSNGIVKATSTVSRANNIHCLRQPAYAMVTKLRMMKR  544

Query  259  DVKDVASELVKRMGLLLMRPDIKEL  283
            ++++V + +  R+G  L+ P   EL
Sbjct  545  EIREVFAPVNLRLGYSLLNPQQCEL  569


> bsc:COCSADRAFT_305741  hypothetical protein
Length=911

 Score = 36.6 bits (83),  Expect = 6.6, Method: Composition-based stats.
 Identities = 28/105 (27%), Positives = 50/105 (48%), Gaps = 9/105 (9%)

Query  82   VYGSGVTGNSAGSAPQYQPAKIQRATMEPY--RGWNLGLSDAASMYMAMRQNKAQVENME  139
            VY S +  + A + PQ +P  + R     Y  R W      A S+   +R +++ +    
Sbjct  782  VYQSPILTDRAFAHPQTKPDLVARLMGTTYAERTW------ARSVASLVRPSRSNLRPDS  835

Query  140  AQNKLIKEQARTEGIRQGNIAMSTARSGFDLNLARE-LRNVSIDR  183
              +  +KE+AR +G     +   T R GF +++ R+ L ++ IDR
Sbjct  836  LTDPALKEKARKDGQHDSLVDPGTIRYGFGIHVGRDGLEHLGIDR  880



Lambda      K        H        a         alpha
   0.313    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479831790136