bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-31_CDS_annotation_glimmer3.pl_2_4

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  nmo:Nmlp_2057  hyuB; N-methylhydantoinase (ATP-hydrolyzing) B (...  32.7    5.4
  cmp:Cha6605_5388  transcription termination factor NusA             32.3    6.3
  hhn:HISP_18300  5-oxoprolinase                                      32.0    7.4
  hhi:HAH_5026  hyuB; N-methylhydantoinase B (EC:3.5.2.14)            32.0    7.4


> nmo:Nmlp_2057  hyuB; N-methylhydantoinase (ATP-hydrolyzing) B 
(EC:3.5.2.14)
Length=536

 Score = 32.7 bits (73),  Expect = 5.4, Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (47%), Gaps = 1/58 (2%)

Query  1    MEKKIEKTIPAVKPCDYFVVSVQKSPSVPPQHVVCTTSVSLGKTVGSILDTDPFALCI  58
            +E  +   +   K   YFVV     P +PP H  C   VS+    GS+L+ +P A  +
Sbjct  275  LEGNLNAPLSVAKSAVYFVVRCVTDPEIPPNH-GCYDPVSVDAPEGSLLNPEPPAAVV  331


> cmp:Cha6605_5388  transcription termination factor NusA
Length=434

 Score = 32.3 bits (72),  Expect = 6.3, Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (52%), Gaps = 3/56 (5%)

Query  9    IPAVKPCDYFVVSVQKSPSVPPQHVVCTTSVSLGKTVGSILDTDPFALCIVSRGSR  64
            +P ++     +V+V +  S P +HV   T +++    G   D DP   CI +RGSR
Sbjct  258  VPEIEEELVRIVAVAREASPPSRHVGPRTKIAVDTLEG---DVDPVGACIGARGSR  310


> hhn:HISP_18300  5-oxoprolinase
Length=542

 Score = 32.0 bits (71),  Expect = 7.4, Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query  9    IPAVKPCDYFVVSVQKSPSVPPQHVVCTTSVSLGKTVGSILDTDPFALCI  58
            +   K   YFVV     P +PP H  C   VS+    GSILD  P A  +
Sbjct  291  LSVAKSAVYFVVRAITDPEIPPNH-GCYEPVSVSVPEGSILDPKPPAAVV  339


> hhi:HAH_5026  hyuB; N-methylhydantoinase B (EC:3.5.2.14)
Length=542

 Score = 32.0 bits (71),  Expect = 7.4, Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query  9    IPAVKPCDYFVVSVQKSPSVPPQHVVCTTSVSLGKTVGSILDTDPFALCI  58
            +   K   YFVV     P +PP H  C   VS+    GSILD  P A  +
Sbjct  291  LSVAKSAVYFVVRAITDPEIPPNH-GCYEPVSVSVPEGSILDPKPPAAVV  339



Lambda      K        H        a         alpha
   0.317    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128263368604