bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-31_CDS_annotation_glimmer3.pl_2_5

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  tbr:Tb09.160.0710  60S ribosomal protein L35                        35.0    3.0
  tbr:Tb09.160.0700  60S ribosomal protein L35                        35.0    3.0
  cmr:Cycma_2300  4-hydroxy-3-methylbut-2-en-1-yl diphosphate syn...  36.2    3.0
  scr:SCHRY_v1c04970  eta; exfoliative toxin A/B                      34.3    9.4


> tbr:Tb09.160.0710  60S ribosomal protein L35
Length=127

 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query  93   YADTLLPSSDPRDLKEEWYHDRDLSLDSNEN--LVRQQYEIGFKYVPRKV-SVKV  144
            Y+D  L S+ P+ L+ +  H R L+L +NE     R+Q  +  K+ PR++ +VKV
Sbjct  74   YSDKKLRSAKPKTLRAKLTHRRRLALKANEKNRKTRRQLRMAHKF-PRRIYAVKV  127


> tbr:Tb09.160.0700  60S ribosomal protein L35
Length=127

 Score = 35.0 bits (79),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query  93   YADTLLPSSDPRDLKEEWYHDRDLSLDSNEN--LVRQQYEIGFKYVPRKV-SVKV  144
            Y+D  L S+ P+ L+ +  H R L+L +NE     R+Q  +  K+ PR++ +VKV
Sbjct  74   YSDKKLRSAKPKTLRAKLTHRRRLALKANEKNRKTRRQLRMAHKF-PRRIYAVKV  127


> cmr:Cycma_2300  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Length=663

 Score = 36.2 bits (82),  Expect = 3.0, Method: Composition-based stats.
 Identities = 45/168 (27%), Positives = 60/168 (36%), Gaps = 51/168 (30%)

Query  17   LRPRRVTNPYTADVLFSPCGCCAACVANKANVATAYVQ----NMASYFKFCYFVTLTYAD  72
            LR R    P  AD+ F+P         N A VA   V+    N  +Y     F  L Y D
Sbjct  91   LRKRGYNTPLVADIHFTP---------NAAEVAAKIVEKVRVNPGNYADKKKFEVLEYTD  141

Query  73   T------------FLPMVDVCAVERTGNR------------YLEYADTLLPSSDP-----  103
                         FLP+V++C    T  R               Y DT L   +      
Sbjct  142  ASYQAELERIRERFLPLVNICKTHCTAMRIGTNHGSLSDRIMSRYGDTPLGMVESALEFL  201

Query  104  RDLKEEWYHDRDLSL-DSNENLVRQQYEI--------GFKYVPRKVSV  142
            R  + E YHD  +S+  SN  ++ Q Y +        GFK  P  + V
Sbjct  202  RICEAENYHDIVISMKSSNTQVMVQAYRLLVNKLEEGGFKPYPLHLGV  249


> scr:SCHRY_v1c04970  eta; exfoliative toxin A/B
Length=360

 Score = 34.3 bits (77),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (9%)

Query  7    LLTKYLHTECLRPRRVTN----PYTADVLFSPCGCCAACVANK---ANVATAYVQNMASY  59
            ++   ++  C     V N     Y A     P G   ACV +K   AN++  + Q +   
Sbjct  120  IILHLIYIICFTIYHVINFSWKNYLASWFVPPIGIVVACVMSKEVGANISLEFSQGIHQL  179

Query  60   FKFCYFVTLTYADTFLPMV  78
             +FC+++ L Y    LP++
Sbjct  180  SQFCWYLGLGYYVIMLPLM  198



Lambda      K        H        a         alpha
   0.324    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125369324234