bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-34_CDS_annotation_glimmer3.pl_2_2

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pgt:PGTDC60_0495  hypothetical protein                              48.5    2e-04
  vir:X953_15425  transposase                                         44.7    0.029


> pgt:PGTDC60_0495  hypothetical protein
Length=103

 Score = 48.5 bits (114),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (60%), Gaps = 6/72 (8%)

Query  5    GKGAASGASLGSAISPGLGTVIGGIGGAAISAIGSFFGNKSNRKLSKEA--FERESKFAR  62
            GKGAA GA++GS I PGLGT+ GGI GAA+    S  G K+N  +   A  F ++++F  
Sbjct  35   GKGAAIGAAIGSVI-PGLGTITGGIAGAAVE---SLIGEKANENIDNFADNFFQDTEFEF  90

Query  63   EERLAQQQWIEQ  74
            + +    +W  +
Sbjct  91   QCKSCSHKWTRK  102


> vir:X953_15425  transposase
Length=530

 Score = 44.7 bits (104),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 35/53 (66%), Gaps = 2/53 (4%)

Query  3    DIGKGA--ASGASLGSAISPGLGTVIGGIGGAAISAIGSFFGNKSNRKLSKEA  53
            DIG      +GA +G+AI+PG+GT++GG  GA IS +GS    ++ +++ +E 
Sbjct  436  DIGAAGLTTTGALIGTAIAPGIGTIVGGAVGAGISIVGSILIEENIKEVGEEV  488



Lambda      K        H        a         alpha
   0.311    0.124    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753604140916