bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-35_CDS_annotation_glimmer3.pl_2_4
Length=343
Score E
Sequences producing significant alignments: (Bits) Value
cpt:CpB0227 hypothetical protein 41.2 0.043
cpj:CPj0222 hypothetical protein 41.2 0.043
cpa:CP0543 hypothetical protein 41.2 0.043
cpn:CPn0222 hypothetical protein 41.2 0.043
clp:CPK_ORF00729 hypothetical protein 41.2 0.054
llc:LACR_1419 hypothetical protein 42.4 0.094
zma:100216595 TIDP3618; LOC100216595 37.4 3.5
dosa:Os12t0502300-01 Os12g0502300; Similar to Cyclin A-like pr... 37.0 6.1
osa:4352280 Os12g0502300 37.0 6.1
> cpt:CpB0227 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDK--------- 62
Query 86 NLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
+L + ++L L+R+RK+ +F K +R H H ++
Sbjct 63 HLPQYGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDK--------- 62
Query 86 NLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
+L + ++L L+R+RK+ +F K +R H H ++
Sbjct 63 HLPQYGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDK--------- 62
Query 86 NLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
+L + ++L L+R+RK+ +F K +R H H ++
Sbjct 63 HLPQYGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDK--------- 62
Query 86 NLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
+L + ++L L+R+RK+ +F K +R H H ++
Sbjct 63 HLPQYGSLVKLHLQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/112 (29%), Positives = 52/112 (46%), Gaps = 12/112 (11%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDK--------- 62
Query 86 NLKDNNDIATKAIRLCLERVR-KLTGKSVKHWFITELGHEKTERLHLHGIVW 136
+L + ++L L+R+R +++ ++++ E G K +R H H +++
Sbjct 63 HLPQYGSLVKLHLQLFLKRLRDRISPHKIRYFGCGEYG-TKLQRPHYHLLIF 113
> llc:LACR_1419 hypothetical protein
Length=284
Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/126 (31%), Positives = 57/126 (45%), Gaps = 30/126 (24%)
Query 68 FLTLTIDDKSYKQIKQKYNLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTE 127
F TLT DD+ K N + N A K ++ L+ +R+ G+ F+ EL H+ +E
Sbjct 72 FWTLTFDDR-------KVNAR-NYQYARKRLQAWLKYMRETYGR-FGFLFVPEL-HKSSE 121
Query 128 RLHLHGIVWGLG-----------------NGEKVTN--NWKYGI-TFTGYFVNEKTIKYI 167
R+H HG+ G NG ++ N WK G T + EK+ YI
Sbjct 122 RIHFHGVTQGFSPPLVEARYPKNRRLIKRNGMQIYNAPRWKNGFSTVSRIQSKEKSASYI 181
Query 168 TKYMLK 173
TKY+ K
Sbjct 182 TKYISK 187
> zma:100216595 TIDP3618; LOC100216595
Length=322
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/120 (26%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query 37 ACGDC--YECRKQKQR-QWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYN-LKDNND 92
+C C +ECRKQK WMV+ + P+ FL + + +++K N LK +
Sbjct 112 SCSSCLFFECRKQKDLYLWMVK----SPGGPSVKFLVNAV--HTMEELKLTGNHLKGSRP 165
Query 93 IATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWKYGI 152
+ T + + KL + + H F T H K + H H V+ + +G N++ +
Sbjct 166 LLTFSTNFDEQPHWKLVKEIITHIFATPKDHRKAKPFHDHVFVFSIVDGHVWFRNYQISV 225
> dosa:Os12t0502300-01 Os12g0502300; Similar to Cyclin A-like
protein (Fragment).
Length=490
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/154 (25%), Positives = 65/154 (42%), Gaps = 21/154 (14%)
Query 52 WMVRMSEENRQTPNAYFLTLTIDDKSYKQI---KQKYNLKDNND--IATKAIRLCLERVR 106
W+V +SEE + P+ +LT+ + D+ Q +QK L IA+K +C RV
Sbjct 267 WLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVE 326
Query 107 KLTGKSVKHWFITELGHEKTERLHLHGIVWG-LGNGEKVTNNWKYGITF-----TGYFVN 160
+ FIT+ + K E L + G+V +G V + F V
Sbjct 327 EF-------CFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVP 379
Query 161 EKTIKYITKYMLK---VDEKHPKFRGKVLCSAGI 191
T+ Y+ Y+ + +D KF V+ ++ +
Sbjct 380 SITLGYLANYLAELTLIDYSFLKFLPSVVAASAV 413
> osa:4352280 Os12g0502300
Length=490
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/154 (25%), Positives = 65/154 (42%), Gaps = 21/154 (14%)
Query 52 WMVRMSEENRQTPNAYFLTLTIDDKSYKQI---KQKYNLKDNND--IATKAIRLCLERVR 106
W+V +SEE + P+ +LT+ + D+ Q +QK L IA+K +C RV
Sbjct 267 WLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVE 326
Query 107 KLTGKSVKHWFITELGHEKTERLHLHGIVWG-LGNGEKVTNNWKYGITF-----TGYFVN 160
+ FIT+ + K E L + G+V +G V + F V
Sbjct 327 EF-------CFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVP 379
Query 161 EKTIKYITKYMLK---VDEKHPKFRGKVLCSAGI 191
T+ Y+ Y+ + +D KF V+ ++ +
Sbjct 380 SITLGYLANYLAELTLIDYSFLKFLPSVVAASAV 413
Lambda K H a alpha
0.319 0.137 0.416 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 635046354089