bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-36_CDS_annotation_glimmer3.pl_2_2
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
pma:Pro_1274 DNA helicase 40.4 0.65
tet:TTHERM_00077470 potassium cation channel protein 38.1 2.8
mxa:MXAN_7256 hypothetical protein 36.6 7.4
> pma:Pro_1274 DNA helicase
Length=644
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 35/64 (55%), Gaps = 3/64 (5%)
Query 137 EQWAMRANQIELGLNLANLKKQGEVLDSQAEQNRASASKTTEEAQTEREMREGKVKEIFQ 196
EQWA EL L A K G++ Q E NRA+ S++ +++ + E+RE + EIF
Sbjct 446 EQWADVFQDHELSLRFA---KCGDLAHVQGEGNRAADSRSIDKSNVQVELRERPIGEIFS 502
Query 197 RGKS 200
KS
Sbjct 503 LTKS 506
> tet:TTHERM_00077470 potassium cation channel protein
Length=838
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (43%), Gaps = 35/217 (16%)
Query 33 GIGNRKRAKRQLENQIKLNEAANESNYRWGEKAAENAFKRQMEAYERSYKDQSYAAMRKQ 92
I NRK+ +Q IK + +E +++ + FK E+Y S+ Y+ + +
Sbjct 598 AIFNRKKECKQQFFAIKSQQQKDEF-FKYAQ-----TFKNLDESYNSSH-SLGYSYLTQS 650
Query 93 MEEAGLSTGL-----MYGGSGSGGGSGFMTQGPMGQAHGANAGKADSPAEQWAMRANQIE 147
+E S+ + ++ GS G + F +Q P+ + K P Q + +I+
Sbjct 651 QQENEESSVIQNNNSVFFGSTEGRNNTFKSQNPISEQ------KIKKPLSQTCLSKIEID 704
Query 148 LGLNLANLKKQGEVL---------DSQAEQNRASASKTTEEAQTEREMREGKVKEIFQRG 198
L LA +K+ +L DS ++N + ++ + R+ + +FQRG
Sbjct 705 LNPQLAEERKKKSILSFKINSEINDSHMDKNYLKREPSDQDITKQEAQRKNLNRFLFQRG 764
Query 199 KSQYIDNVRKMFEDMAIEDN------DRWGVEVYDDF 229
+ Y+ + +FE +++N + W E ++F
Sbjct 765 R--YLKQAKPVFEVSQMQNNFYEQEDNPWLFESLENF 799
> mxa:MXAN_7256 hypothetical protein
Length=443
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 58/265 (22%), Positives = 102/265 (38%), Gaps = 66/265 (25%)
Query 68 NAFKRQMEAYERSYKDQSYAAMRKQMEEAGLSTGLMYGGSGS------------GGGSGF 115
+AF ++ ++R D +A +Q+E+AG G + G +G+ GG +
Sbjct 191 DAFSNLVKGWQRLSSDTKHAVSFEQLEDAGYHFGRVMGANGARVLILALTAALGGGAANM 250
Query 116 MTQGPM--GQAHGA-----NAGKADSPAEQWAMRANQIELGLNLANLKKQG--------- 159
++GPM G A A NAG S A +R+ + G+ +
Sbjct 251 ASKGPMLPGFARAALATETNAGIQLSAAMSGGVRSISLAEGILTVGVVPNAVAATALNPA 310
Query 160 ---------EVLDSQAEQNRASASKTTEEAQTEREMREGK-VKEIFQR---GKSQYIDNV 206
E L S Q KT EA+ ++ E + + +R G+S+++D+
Sbjct 311 GGIPRETRIEELASDPAQGGKVTPKTRREAEVGLQLEERRQLPAPIKRDPTGQSEFVDS- 369
Query 207 RKMFEDMAIEDNDRWGVEVYDDFYGDHRIDSTRLPTRKDSAEIIKTLSESEAAKGQSENS 266
+W ++ +D +R P RK + + L + +A + EN
Sbjct 370 ----------QGIKWDIKTFD----------SRFPPRKGGFSLERDLDKIKAELARGEN- 408
Query 267 KALAELNTERKKYLFIEAMSNLIQA 291
LNTE ++A+ N I A
Sbjct 409 ---VILNTENMSAQHVQALRNAIDA 430
Lambda K H a alpha
0.310 0.126 0.349 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 675752473466